Wall clock time and date at job start Wed Apr 1 2020 05:29:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47435 * 2 1 4 4 C 1.53003 * 109.47138 * 239.99561 * 2 1 3 5 5 C 1.50707 * 109.46683 * 119.99952 * 2 1 3 6 6 O 1.34253 * 126.52517 * 241.70448 * 5 2 1 7 7 C 1.34052 * 108.22812 * 180.28580 * 6 5 2 8 8 N 1.29930 * 109.24040 * 359.73830 * 7 6 5 9 9 C 1.36073 * 108.47941 * 359.97438 * 8 7 6 10 10 C 1.47421 * 126.44693 * 179.97438 * 9 8 7 11 11 O 1.21612 * 120.00025 * 257.07199 * 10 9 8 12 12 N 1.34775 * 119.99682 * 77.08076 * 10 9 8 13 13 C 1.47213 * 121.36346 * 4.37594 * 12 10 9 14 14 C 1.52760 * 107.76114 * 238.09541 * 13 12 10 15 15 C 1.53152 * 110.83972 * 302.11933 * 14 13 12 16 16 H 1.09002 * 111.79971 * 289.67483 * 15 14 13 17 17 C 1.53937 * 110.88944 * 55.27139 * 15 14 13 18 18 H 1.09001 * 109.51152 * 188.81280 * 17 15 14 19 19 C 1.54198 * 102.21113 * 72.76350 * 17 15 14 20 20 C 1.54725 * 102.06316 * 37.57098 * 19 17 15 21 21 N 1.47201 * 107.24303 * 338.47896 * 20 19 17 22 22 C 1.36938 * 125.89063 * 176.30259 * 21 20 19 23 23 H 1.07999 * 120.00182 * 185.50134 * 22 21 20 24 24 C 1.38812 * 119.99826 * 5.50277 * 22 21 20 25 25 N 1.31617 * 120.00093 * 354.68888 * 24 22 21 26 26 Si 1.86801 * 119.99922 * 174.69281 * 24 22 21 27 27 H 1.48503 * 109.47159 * 94.99580 * 26 24 22 28 28 H 1.48498 * 109.47156 * 214.99531 * 26 24 22 29 29 H 1.48496 * 109.47173 * 334.99363 * 26 24 22 30 30 C 1.46715 * 121.35476 * 184.10412 * 12 10 9 31 31 H 1.08995 * 109.47295 * 304.63578 * 1 2 3 32 32 H 1.09001 * 109.46698 * 64.63503 * 1 2 3 33 33 H 1.09001 * 109.47283 * 184.63070 * 1 2 3 34 34 H 1.09001 * 109.47108 * 179.97438 * 3 2 1 35 35 H 1.08996 * 109.46618 * 299.99890 * 3 2 1 36 36 H 1.09001 * 109.46928 * 59.99719 * 3 2 1 37 37 H 1.08998 * 109.47412 * 307.16933 * 4 2 1 38 38 H 1.09002 * 109.46898 * 67.17114 * 4 2 1 39 39 H 1.09003 * 109.46698 * 187.16745 * 4 2 1 40 40 H 1.07998 * 125.37550 * 179.75250 * 7 6 5 41 41 H 1.09000 * 109.80006 * 357.66087 * 13 12 10 42 42 H 1.09001 * 109.79832 * 118.52921 * 13 12 10 43 43 H 1.08996 * 109.20108 * 62.46509 * 14 13 12 44 44 H 1.08997 * 109.20151 * 181.76990 * 14 13 12 45 45 H 1.08999 * 110.91212 * 155.76318 * 19 17 15 46 46 H 1.08994 * 110.91422 * 279.38328 * 19 17 15 47 47 H 1.09001 * 109.88327 * 97.89006 * 20 19 17 48 48 H 1.08998 * 109.88456 * 219.06392 * 20 19 17 49 49 H 0.96994 * 120.00207 * 180.02562 * 25 24 22 50 50 H 1.09002 * 109.13950 * 248.21418 * 30 12 10 51 51 H 1.08995 * 109.15075 * 7.35622 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 2.0322 -0.7104 1.2306 6 8 2.7807 -0.1792 2.2104 7 6 3.0220 -1.1350 3.1188 8 7 2.4472 -2.2379 2.7428 9 6 1.8105 -2.0116 1.5617 10 6 1.0334 -2.9934 0.7836 11 8 1.5172 -3.5024 -0.2093 12 7 -0.2133 -3.3266 1.1724 13 6 -0.8641 -2.6603 2.3124 14 6 -1.2301 -3.7356 3.3338 15 6 -2.1448 -4.7927 2.7081 16 1 -3.1405 -4.3979 2.5061 17 6 -1.5015 -5.3985 1.4476 18 1 -2.2285 -6.0281 0.9346 19 6 -0.3855 -6.2805 2.0427 20 6 -1.0619 -6.8428 3.3157 21 7 -2.1685 -5.9348 3.6590 22 6 -3.0649 -6.1115 4.6791 23 1 -3.8955 -5.4306 4.7922 24 6 -2.9058 -7.1658 5.5679 25 7 -1.9564 -8.0557 5.3702 26 14 -4.0393 -7.3217 7.0446 27 1 -5.1617 -8.2357 6.7127 28 1 -3.2790 -7.8695 8.1966 29 1 -4.5782 -5.9840 7.3983 30 6 -0.9793 -4.3642 0.4731 31 1 -0.3633 0.5840 0.8455 32 1 -0.3633 0.4402 -0.9286 33 1 -0.3634 -1.0243 0.0830 34 1 3.1301 1.4424 0.0005 35 1 1.6767 1.9562 -0.8900 36 1 1.6767 1.9563 0.8900 37 1 1.5758 -1.7053 -1.3156 38 1 1.7852 -0.1388 -2.1346 39 1 3.1224 -0.8337 -1.1873 40 1 3.6024 -1.0082 4.0207 41 1 -0.1777 -1.9426 2.7616 42 1 -1.7658 -2.1489 1.9754 43 1 -0.3190 -4.2159 3.6907 44 1 -1.7429 -3.2707 4.1757 45 1 -0.1177 -7.0844 1.3571 46 1 0.4886 -5.6820 2.2988 47 1 -1.4497 -7.8422 3.1188 48 1 -0.3424 -6.8764 4.1338 49 1 -1.8455 -8.7926 5.9911 50 1 -1.8188 -3.9006 -0.0451 51 1 -0.3351 -4.8528 -0.2578 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036864948.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:29:09 Heat of formation + Delta-G solvation = -5.833240 kcal Electronic energy + Delta-G solvation = -32943.239335 eV Core-core repulsion = 28844.139606 eV Total energy + Delta-G solvation = -4099.099728 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -44.49892 -41.47389 -39.70416 -37.92536 -36.74581 -35.84554 -34.42330 -32.88024 -31.47928 -30.65662 -29.84801 -28.28361 -28.25192 -26.93126 -25.93826 -24.27250 -23.99133 -23.87356 -21.91281 -21.63141 -20.52473 -19.68770 -18.89175 -18.71581 -17.99373 -17.40424 -16.88302 -16.75858 -16.59447 -16.20169 -15.88043 -15.60048 -15.22485 -15.01950 -14.96438 -14.55122 -14.48302 -14.36326 -14.11050 -13.76031 -13.38920 -13.29812 -13.14070 -13.10955 -13.04082 -12.74748 -12.69021 -12.63082 -12.58943 -12.52812 -12.30900 -12.05082 -12.02105 -11.94426 -11.68748 -11.58211 -11.51106 -11.40228 -11.19777 -11.09292 -10.69623 -9.90786 -9.71902 -8.87598 -7.82541 -5.16954 0.27065 1.17225 1.45629 1.47437 1.50678 1.56443 1.58005 1.97277 2.50268 3.12969 3.35562 3.38882 3.50356 3.67070 3.78092 3.86931 3.88414 3.90721 4.02027 4.06715 4.13183 4.25669 4.40840 4.46464 4.52977 4.54325 4.62871 4.68632 4.70367 4.77209 4.78303 4.81003 4.81808 4.88424 4.92812 4.93791 4.99112 5.02311 5.08098 5.13340 5.23420 5.30028 5.32681 5.37632 5.44264 5.50780 5.59324 5.66504 5.76556 6.19487 6.25570 6.54173 6.95301 7.10404 7.78570 8.46798 9.28713 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.018406 B = 0.003050 C = 0.002925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.851176 B = 9178.363237 C = 9568.873018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.013 3.987 3 C -0.137 4.137 4 C -0.148 4.148 5 C 0.026 3.974 6 O -0.191 6.191 7 C 0.189 3.811 8 N -0.503 5.503 9 C -0.079 4.079 10 C 0.611 3.389 11 O -0.559 6.559 12 N -0.587 5.587 13 C 0.125 3.875 14 C -0.127 4.127 15 C 0.163 3.837 16 H 0.079 0.921 17 C -0.099 4.099 18 H 0.089 0.911 19 C -0.122 4.122 20 C 0.195 3.805 21 N -0.619 5.619 22 C -0.231 4.231 23 H 0.088 0.912 24 C -0.071 4.071 25 N -0.955 5.955 26 Si 0.975 3.025 27 H -0.288 1.288 28 H -0.300 1.300 29 H -0.264 1.264 30 C 0.132 3.868 31 H 0.071 0.929 32 H 0.094 0.906 33 H 0.047 0.953 34 H 0.057 0.943 35 H 0.088 0.912 36 H 0.065 0.935 37 H 0.056 0.944 38 H 0.093 0.907 39 H 0.048 0.952 40 H 0.298 0.702 41 H 0.075 0.925 42 H 0.104 0.896 43 H 0.031 0.969 44 H 0.063 0.937 45 H 0.069 0.931 46 H 0.044 0.956 47 H 0.010 0.990 48 H -0.008 1.008 49 H 0.243 0.757 50 H 0.104 0.896 51 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.193 23.096 -12.293 26.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.013 3.987 3 C -0.194 4.194 4 C -0.205 4.205 5 C -0.030 4.030 6 O -0.077 6.077 7 C -0.038 4.038 8 N -0.232 5.232 9 C -0.198 4.198 10 C 0.398 3.602 11 O -0.438 6.438 12 N -0.318 5.318 13 C 0.003 3.997 14 C -0.168 4.168 15 C 0.057 3.943 16 H 0.097 0.903 17 C -0.119 4.119 18 H 0.107 0.893 19 C -0.160 4.160 20 C 0.069 3.931 21 N -0.344 5.344 22 C -0.360 4.360 23 H 0.106 0.894 24 C -0.264 4.264 25 N -0.605 5.605 26 Si 0.804 3.196 27 H -0.215 1.215 28 H -0.227 1.227 29 H -0.189 1.189 30 C 0.010 3.990 31 H 0.090 0.910 32 H 0.113 0.887 33 H 0.066 0.934 34 H 0.077 0.923 35 H 0.107 0.893 36 H 0.084 0.916 37 H 0.075 0.925 38 H 0.112 0.888 39 H 0.067 0.933 40 H 0.313 0.687 41 H 0.093 0.907 42 H 0.122 0.878 43 H 0.050 0.950 44 H 0.082 0.918 45 H 0.088 0.912 46 H 0.063 0.937 47 H 0.028 0.972 48 H 0.010 0.990 49 H 0.052 0.948 50 H 0.122 0.878 51 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 6.406 22.112 -12.300 26.101 hybrid contribution 0.029 -0.730 1.397 1.577 sum 6.435 21.382 -10.903 24.849 Atomic orbital electron populations 1.22030 0.91083 1.02506 1.04522 1.19457 0.96852 0.96158 0.86256 1.21861 1.01452 0.92170 1.03934 1.22081 1.01028 1.01167 0.96181 1.23951 0.94958 0.91851 0.92262 1.84360 1.54286 1.41187 1.27866 1.29052 0.99326 0.79424 0.96006 1.70859 1.12340 1.28989 1.11057 1.21187 1.07525 0.94820 0.96302 1.16900 0.80513 0.79873 0.82925 1.90742 1.70544 1.54684 1.27815 1.48003 1.14108 1.37542 1.32148 1.21756 0.98180 0.94220 0.85587 1.22239 0.99497 0.96794 0.98268 1.21460 0.96851 0.87745 0.88267 0.90320 1.21901 0.97416 0.96819 0.95798 0.89252 1.22550 0.97287 0.98825 0.97332 1.20800 0.88446 0.91995 0.91835 1.45203 1.32591 1.22492 1.34066 1.19481 1.03939 1.09690 1.02852 0.89381 1.25664 1.00660 0.97976 1.02090 1.70218 1.36366 1.15499 1.38370 0.85100 0.77559 0.78012 0.78921 1.21541 1.22731 1.18886 1.21171 0.96217 0.87930 0.93700 0.90992 0.88682 0.93382 0.92343 0.89298 0.91550 0.92526 0.88785 0.93319 0.68676 0.90665 0.87795 0.94995 0.91832 0.91191 0.93671 0.97169 0.98977 0.94757 0.87790 0.89712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.05 8.39 71.98 0.60 -1.45 16 2 C 0.01 0.22 0.80 -52.92 -0.04 0.18 16 3 C -0.14 -1.57 8.07 71.98 0.58 -0.99 16 4 C -0.15 -2.73 8.20 71.98 0.59 -2.14 16 5 C 0.03 0.58 5.72 25.19 0.14 0.72 16 6 O -0.19 -3.72 10.19 0.39 0.00 -3.72 16 7 C 0.19 3.61 13.19 130.52 1.72 5.34 16 8 N -0.50 -14.67 11.31 -305.15 -3.45 -18.12 16 9 C -0.08 -2.26 4.70 40.41 0.19 -2.07 16 10 C 0.61 19.34 5.30 86.66 0.46 19.80 16 11 O -0.56 -20.42 14.51 -4.07 -0.06 -20.47 16 12 N -0.59 -16.73 2.36 -826.84 -1.95 -18.68 16 13 C 0.13 3.30 6.02 86.16 0.52 3.82 16 14 C -0.13 -4.49 5.22 30.57 0.16 -4.33 16 15 C 0.16 6.17 3.62 44.95 0.16 6.34 16 16 H 0.08 2.74 8.14 -2.39 -0.02 2.72 16 17 C -0.10 -3.36 2.89 -10.60 -0.03 -3.39 16 18 H 0.09 2.93 8.14 -2.39 -0.02 2.91 16 19 C -0.12 -5.00 5.90 31.59 0.19 -4.81 16 20 C 0.19 10.18 5.08 86.83 0.44 10.62 16 21 N -0.62 -31.43 2.88 -665.75 -1.92 -33.35 16 22 C -0.23 -12.74 10.30 84.03 0.87 -11.88 16 23 H 0.09 4.55 7.83 -2.91 -0.02 4.53 16 24 C -0.07 -4.12 5.48 84.86 0.47 -3.65 16 25 N -0.96 -59.37 10.39 21.65 0.22 -59.15 16 26 Si 0.98 46.24 29.56 68.60 2.03 48.27 16 27 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 28 H -0.30 -14.56 7.11 99.48 0.71 -13.86 16 29 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 30 C 0.13 3.60 5.87 85.81 0.50 4.10 16 31 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.05 0.86 5.80 -2.39 -0.01 0.85 16 34 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 35 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 36 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 37 H 0.06 1.38 5.19 -2.39 -0.01 1.37 16 38 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.05 0.98 8.13 -2.39 -0.02 0.96 16 40 H 0.30 2.24 8.06 -2.91 -0.02 2.22 16 41 H 0.07 1.98 6.38 -2.39 -0.02 1.96 16 42 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 43 H 0.03 1.37 6.92 -2.39 -0.02 1.35 16 44 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 45 H 0.07 2.67 8.14 -2.39 -0.02 2.65 16 46 H 0.04 1.96 7.41 -2.39 -0.02 1.94 16 47 H 0.01 0.59 7.42 -2.39 -0.02 0.57 16 48 H -0.01 -0.48 7.53 -2.39 -0.02 -0.50 16 49 H 0.24 14.81 8.31 -92.71 -0.77 14.03 16 50 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 51 H 0.08 2.47 7.06 -2.39 -0.02 2.45 16 Total: -1.00 -78.45 391.02 3.32 -75.12 By element: Atomic # 1 Polarization: 12.98 SS G_CDS: 0.92 Total: 13.91 kcal Atomic # 6 Polarization: 8.67 SS G_CDS: 7.52 Total: 16.19 kcal Atomic # 7 Polarization: -122.21 SS G_CDS: -7.10 Total: -129.30 kcal Atomic # 8 Polarization: -24.14 SS G_CDS: -0.06 Total: -24.19 kcal Atomic # 14 Polarization: 46.24 SS G_CDS: 2.03 Total: 48.27 kcal Total: -78.45 3.32 -75.12 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036864948.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.291 kcal (2) G-P(sol) polarization free energy of solvation -78.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds