Wall clock time and date at job start Wed Apr 1 2020 05:29:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47222 * 2 1 4 4 C 1.52993 * 109.47356 * 239.99745 * 2 1 3 5 5 C 1.50699 * 109.47110 * 120.00012 * 2 1 3 6 6 O 1.34263 * 126.52541 * 242.53446 * 5 2 1 7 7 C 1.34047 * 108.22772 * 180.02562 * 6 5 2 8 8 N 1.29938 * 109.24309 * 359.74167 * 7 6 5 9 9 C 1.36061 * 108.47635 * 0.40939 * 8 7 6 10 10 C 1.47423 * 126.44911 * 179.86310 * 9 8 7 11 11 O 1.21615 * 119.99447 * 255.90783 * 10 9 8 12 12 N 1.34772 * 120.00460 * 75.90448 * 10 9 8 13 13 C 1.46596 * 119.68033 * 355.32688 * 12 10 9 14 14 C 1.53954 * 110.57810 * 227.80028 * 13 12 10 15 15 C 1.51518 * 107.34669 * 308.94819 * 14 13 12 16 16 H 1.09000 * 109.28162 * 306.29376 * 15 14 13 17 17 C 1.55370 * 107.79125 * 64.85456 * 15 14 13 18 18 H 1.08996 * 111.51016 * 50.61898 * 17 15 14 19 19 C 1.53742 * 100.22004 * 168.51831 * 17 15 14 20 20 C 1.55295 * 101.87557 * 320.88767 * 19 17 15 21 21 N 1.45468 * 116.87101 * 181.60165 * 15 14 13 22 22 C 1.36945 * 126.40252 * 30.88494 * 21 15 14 23 23 H 1.07998 * 119.99561 * 359.97438 * 22 21 15 24 24 C 1.38804 * 119.99850 * 179.97438 * 22 21 15 25 25 N 1.31615 * 120.00424 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 119.99905 * 180.02562 * 24 22 21 27 27 H 1.48499 * 109.47280 * 89.99830 * 26 24 22 28 28 H 1.48503 * 109.47280 * 210.00285 * 26 24 22 29 29 H 1.48503 * 109.47128 * 329.99900 * 26 24 22 30 30 C 1.48916 * 119.82484 * 174.98563 * 12 10 9 31 31 H 1.08997 * 109.47371 * 294.84742 * 1 2 3 32 32 H 1.08997 * 109.47079 * 54.84532 * 1 2 3 33 33 H 1.09005 * 109.47253 * 174.85066 * 1 2 3 34 34 H 1.08995 * 109.47470 * 179.97438 * 3 2 1 35 35 H 1.09007 * 109.47104 * 299.99948 * 3 2 1 36 36 H 1.09002 * 109.47497 * 59.99695 * 3 2 1 37 37 H 1.09006 * 109.47223 * 306.65369 * 4 2 1 38 38 H 1.09002 * 109.47157 * 66.64600 * 4 2 1 39 39 H 1.08993 * 109.47661 * 186.64819 * 4 2 1 40 40 H 1.07999 * 125.37900 * 180.02562 * 7 6 5 41 41 H 1.09007 * 109.25701 * 107.51718 * 13 12 10 42 42 H 1.08995 * 109.25682 * 348.08367 * 13 12 10 43 43 H 1.09000 * 109.88631 * 189.49035 * 14 13 12 44 44 H 1.09003 * 109.94350 * 68.44145 * 14 13 12 45 45 H 1.08999 * 110.95971 * 79.04651 * 19 17 15 46 46 H 1.09001 * 110.95106 * 202.73582 * 19 17 15 47 47 H 1.08996 * 109.92214 * 141.85162 * 20 19 17 48 48 H 1.09002 * 109.91702 * 263.15302 * 20 19 17 49 49 H 0.97000 * 120.00553 * 180.02562 * 25 24 22 50 50 H 1.08996 * 109.91504 * 8.97354 * 30 12 10 51 51 H 1.09001 * 110.80541 * 247.01599 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 2.0323 -0.7104 1.2304 6 8 2.7678 -0.1751 2.2179 7 6 3.0095 -1.1309 3.1261 8 7 2.4474 -2.2379 2.7427 9 6 1.8272 -2.0168 1.5521 10 6 1.0701 -3.0047 0.7621 11 8 1.5652 -3.4940 -0.2352 12 7 -0.1706 -3.3657 1.1450 13 6 -0.7209 -2.8508 2.4024 14 6 -1.3377 -3.9925 3.2309 15 6 -2.2823 -4.7514 2.3211 16 1 -2.9906 -4.0535 1.8747 17 6 -1.4339 -5.4074 1.1969 18 1 -0.5920 -5.9660 1.6058 19 6 -2.4811 -6.3481 0.5786 20 6 -3.2318 -6.8619 1.8372 21 7 -3.0112 -5.8637 2.9108 22 6 -3.4175 -5.9692 4.2144 23 1 -3.1997 -5.1756 4.9137 24 6 -4.1093 -7.0960 4.6366 25 7 -4.3744 -8.0633 3.7843 26 14 -4.6642 -7.2397 6.4145 27 1 -6.0225 -6.6569 6.5577 28 1 -4.6954 -8.6709 6.8092 29 1 -3.7157 -6.5054 7.2899 30 6 -0.9751 -4.2776 0.2854 31 1 -0.3634 0.4318 0.9325 32 1 -0.3633 0.5917 -0.8402 33 1 -0.3634 -1.0235 -0.0922 34 1 3.1299 1.4425 0.0005 35 1 1.6766 1.9563 -0.8900 36 1 1.6766 1.9564 0.8900 37 1 1.5827 -1.7089 -1.3107 38 1 1.7771 -0.1434 -2.1352 39 1 3.1234 -0.8255 -1.1917 40 1 3.5775 -1.0003 4.0353 41 1 -1.4900 -2.1106 2.1818 42 1 0.0762 -2.3796 2.9774 43 1 -1.8885 -3.5811 4.0767 44 1 -0.5525 -4.6585 3.5886 45 1 -3.1549 -5.8016 -0.0813 46 1 -2.0012 -7.1706 0.0481 47 1 -4.2971 -6.9498 1.6241 48 1 -2.8300 -7.8287 2.1403 49 1 -4.8582 -8.8507 4.0793 50 1 -0.3544 -4.6740 -0.5182 51 1 -1.8385 -3.7574 -0.1292 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036864950.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:29:18 Heat of formation + Delta-G solvation = 17.243744 kcal Electronic energy + Delta-G solvation = -32608.525032 eV Core-core repulsion = 28510.425996 eV Total energy + Delta-G solvation = -4098.099035 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -43.66874 -40.12240 -38.32014 -37.20035 -35.38944 -34.91160 -32.67962 -31.54889 -30.30196 -29.34276 -28.11206 -27.70419 -27.54962 -25.23696 -24.40324 -23.18994 -22.74541 -22.34190 -20.54648 -20.05872 -19.60641 -19.18713 -17.73249 -17.05250 -16.58912 -16.11990 -15.95053 -15.53888 -15.22834 -14.92942 -14.45211 -14.34697 -14.27218 -13.91962 -13.81764 -13.64019 -13.19046 -12.95378 -12.74294 -12.57421 -12.52517 -12.42450 -11.97828 -11.93774 -11.72526 -11.51250 -11.42997 -11.40291 -11.38308 -11.21136 -10.83797 -10.78130 -10.72937 -10.67713 -10.21996 -10.10517 -9.94453 -9.82607 -9.61739 -9.46807 -9.04977 -8.61779 -8.55361 -6.83007 -5.70771 -3.03881 1.10684 2.15489 2.34153 2.51932 2.98408 3.40084 3.45128 3.47081 3.92466 4.20367 4.36052 4.49719 4.51994 4.68038 4.76857 5.05187 5.08863 5.20657 5.24514 5.30669 5.33611 5.35060 5.39294 5.44226 5.51911 5.55223 5.58066 5.61261 5.62148 5.67963 5.79951 5.80766 5.87326 5.90002 5.94072 6.00072 6.11181 6.15840 6.20382 6.25048 6.34138 6.47501 6.62342 6.67777 6.82018 7.08860 7.34789 7.38633 7.55976 7.62435 7.81872 8.08608 8.25086 9.20119 9.83768 10.51729 11.41813 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.017496 B = 0.002977 C = 0.002748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.960155 B = 9403.453774 C =10188.543204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.016 3.984 3 C -0.142 4.142 4 C -0.152 4.152 5 C 0.019 3.981 6 O -0.195 6.195 7 C 0.170 3.830 8 N -0.455 5.455 9 C -0.048 4.048 10 C 0.605 3.395 11 O -0.530 6.530 12 N -0.592 5.592 13 C 0.114 3.886 14 C -0.126 4.126 15 C 0.168 3.832 16 H 0.020 0.980 17 C -0.125 4.125 18 H 0.082 0.918 19 C -0.136 4.136 20 C 0.177 3.823 21 N -0.595 5.595 22 C -0.225 4.225 23 H 0.078 0.922 24 C -0.008 4.008 25 N -0.921 5.921 26 Si 0.909 3.091 27 H -0.289 1.289 28 H -0.291 1.291 29 H -0.282 1.282 30 C 0.128 3.872 31 H 0.062 0.938 32 H 0.074 0.926 33 H 0.064 0.936 34 H 0.061 0.939 35 H 0.068 0.932 36 H 0.061 0.939 37 H 0.083 0.917 38 H 0.068 0.932 39 H 0.059 0.941 40 H 0.254 0.746 41 H 0.063 0.937 42 H 0.078 0.922 43 H 0.075 0.925 44 H 0.070 0.930 45 H 0.058 0.942 46 H 0.061 0.939 47 H 0.038 0.962 48 H 0.055 0.945 49 H 0.252 0.748 50 H 0.092 0.908 51 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.258 19.056 -7.797 23.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.015 3.985 3 C -0.200 4.200 4 C -0.209 4.209 5 C -0.036 4.036 6 O -0.081 6.081 7 C -0.058 4.058 8 N -0.184 5.184 9 C -0.169 4.169 10 C 0.391 3.609 11 O -0.407 6.407 12 N -0.324 5.324 13 C -0.009 4.009 14 C -0.165 4.165 15 C 0.060 3.940 16 H 0.037 0.963 17 C -0.145 4.145 18 H 0.100 0.900 19 C -0.174 4.174 20 C 0.053 3.947 21 N -0.319 5.319 22 C -0.353 4.353 23 H 0.096 0.904 24 C -0.204 4.204 25 N -0.569 5.569 26 Si 0.740 3.260 27 H -0.217 1.217 28 H -0.217 1.217 29 H -0.207 1.207 30 C 0.007 3.993 31 H 0.081 0.919 32 H 0.093 0.907 33 H 0.083 0.917 34 H 0.080 0.920 35 H 0.087 0.913 36 H 0.080 0.920 37 H 0.102 0.898 38 H 0.087 0.913 39 H 0.078 0.922 40 H 0.270 0.730 41 H 0.081 0.919 42 H 0.096 0.904 43 H 0.094 0.906 44 H 0.088 0.912 45 H 0.077 0.923 46 H 0.080 0.920 47 H 0.057 0.943 48 H 0.073 0.927 49 H 0.062 0.938 50 H 0.110 0.890 51 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 12.384 18.068 -7.825 23.261 hybrid contribution -0.178 0.404 1.118 1.202 sum 12.206 18.472 -6.707 23.134 Atomic orbital electron populations 1.21995 0.91934 1.03320 1.02940 1.19274 0.96145 0.95240 0.87836 1.21881 1.01632 0.93725 1.02727 1.22146 1.01980 1.02092 0.94694 1.23494 0.96215 0.92289 0.91651 1.84326 1.54985 1.41160 1.27678 1.28074 1.01134 0.80785 0.95810 1.70897 1.10823 1.26778 1.09894 1.21352 1.06209 0.93968 0.95353 1.16821 0.80800 0.79825 0.83499 1.90766 1.68787 1.54005 1.27110 1.48503 1.14468 1.47123 1.22325 1.21783 0.98371 0.96668 0.84113 1.21859 0.99491 0.96756 0.98426 1.20647 0.90976 0.90560 0.91829 0.96264 1.22644 0.98577 0.95744 0.97543 0.90011 1.22721 0.97236 0.98236 0.99254 1.21546 0.97111 0.92558 0.83471 1.44236 1.63817 1.17061 1.06825 1.18990 1.29442 1.02505 0.84372 0.90413 1.24783 1.00949 0.96776 0.97920 1.69934 1.45273 1.08778 1.32908 0.86158 0.78525 0.76927 0.84390 1.21665 1.21724 1.20719 1.21917 0.94460 0.89782 0.93109 0.91915 0.90714 0.91663 0.92020 0.91319 0.91968 0.89796 0.91281 0.92209 0.73002 0.91900 0.90353 0.90611 0.91164 0.92320 0.92007 0.94344 0.92717 0.93771 0.88994 0.90714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.28 8.30 37.16 0.31 -0.97 16 2 C 0.02 0.15 0.80 -155.67 -0.12 0.02 16 3 C -0.14 -1.03 8.07 37.16 0.30 -0.73 16 4 C -0.15 -1.52 8.18 37.15 0.30 -1.21 16 5 C 0.02 0.22 5.73 -35.08 -0.20 0.02 16 6 O -0.20 -2.00 10.19 6.50 0.07 -1.94 16 7 C 0.17 1.62 13.19 51.96 0.69 2.30 16 8 N -0.45 -6.24 10.66 -11.48 -0.12 -6.37 16 9 C -0.05 -0.68 4.92 -83.02 -0.41 -1.09 16 10 C 0.61 9.55 5.34 -12.52 -0.07 9.49 16 11 O -0.53 -9.48 14.33 5.26 0.08 -9.40 16 12 N -0.59 -8.93 2.79 -172.76 -0.48 -9.41 16 13 C 0.11 1.65 6.20 -3.49 -0.02 1.63 16 14 C -0.13 -2.23 5.45 -26.98 -0.15 -2.38 16 15 C 0.17 3.35 2.57 -67.98 -0.17 3.18 16 16 H 0.02 0.40 7.93 -51.93 -0.41 -0.01 16 17 C -0.12 -2.24 2.84 -89.36 -0.25 -2.49 16 18 H 0.08 1.63 8.12 -51.93 -0.42 1.21 16 19 C -0.14 -2.50 6.53 -25.13 -0.16 -2.66 16 20 C 0.18 4.26 5.45 -1.86 -0.01 4.25 16 21 N -0.59 -14.83 3.35 -163.01 -0.55 -15.37 16 22 C -0.22 -6.13 9.86 -15.06 -0.15 -6.27 16 23 H 0.08 2.03 7.18 -52.49 -0.38 1.66 16 24 C -0.01 -0.23 5.49 -17.43 -0.10 -0.32 16 25 N -0.92 -26.97 10.44 55.49 0.58 -26.39 16 26 Si 0.91 22.01 29.55 -169.99 -5.02 16.99 16 27 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 28 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 29 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 30 C 0.13 1.93 6.05 -3.09 -0.02 1.91 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.06 0.69 6.66 -51.93 -0.35 0.34 16 34 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.07 0.39 8.14 -51.92 -0.42 -0.03 16 36 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 37 H 0.08 1.05 5.08 -51.93 -0.26 0.79 16 38 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 40 H 0.25 1.06 8.06 -52.49 -0.42 0.64 16 41 H 0.06 0.81 8.14 -51.92 -0.42 0.39 16 42 H 0.08 1.11 5.81 -51.93 -0.30 0.81 16 43 H 0.08 1.35 7.59 -51.93 -0.39 0.95 16 44 H 0.07 1.36 8.12 -51.93 -0.42 0.94 16 45 H 0.06 0.98 8.11 -51.93 -0.42 0.56 16 46 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 47 H 0.04 1.01 7.77 -51.93 -0.40 0.60 16 48 H 0.05 1.47 7.22 -51.93 -0.37 1.09 16 49 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 50 H 0.09 1.40 7.01 -51.93 -0.36 1.03 16 51 H 0.07 1.01 8.08 -51.93 -0.42 0.59 16 LS Contribution 391.91 15.07 5.91 5.91 Total: -1.00 -33.20 391.91 -8.07 -41.27 By element: Atomic # 1 Polarization: 8.32 SS G_CDS: -8.28 Total: 0.04 kcal Atomic # 6 Polarization: 4.92 SS G_CDS: -0.24 Total: 4.68 kcal Atomic # 7 Polarization: -56.97 SS G_CDS: -0.57 Total: -57.54 kcal Atomic # 8 Polarization: -11.48 SS G_CDS: 0.14 Total: -11.34 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -33.20 -8.07 -41.27 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036864950.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.510 kcal (2) G-P(sol) polarization free energy of solvation -33.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.266 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds