Wall clock time and date at job start Wed Apr 1 2020 05:29:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47222 * 2 1 4 4 C 1.52993 * 109.47356 * 239.99745 * 2 1 3 5 5 C 1.50699 * 109.47110 * 120.00012 * 2 1 3 6 6 O 1.34263 * 126.52541 * 242.53446 * 5 2 1 7 7 C 1.34047 * 108.22772 * 180.02562 * 6 5 2 8 8 N 1.29938 * 109.24309 * 359.74167 * 7 6 5 9 9 C 1.36061 * 108.47635 * 0.40939 * 8 7 6 10 10 C 1.47423 * 126.44911 * 179.86310 * 9 8 7 11 11 O 1.21615 * 119.99447 * 255.90783 * 10 9 8 12 12 N 1.34772 * 120.00460 * 75.90448 * 10 9 8 13 13 C 1.46596 * 119.68033 * 355.32688 * 12 10 9 14 14 C 1.53954 * 110.57810 * 227.80028 * 13 12 10 15 15 C 1.51518 * 107.34669 * 308.94819 * 14 13 12 16 16 H 1.09000 * 109.28162 * 306.29376 * 15 14 13 17 17 C 1.55370 * 107.79125 * 64.85456 * 15 14 13 18 18 H 1.08996 * 111.51016 * 50.61898 * 17 15 14 19 19 C 1.53742 * 100.22004 * 168.51831 * 17 15 14 20 20 C 1.55295 * 101.87557 * 320.88767 * 19 17 15 21 21 N 1.45468 * 116.87101 * 181.60165 * 15 14 13 22 22 C 1.36945 * 126.40252 * 30.88494 * 21 15 14 23 23 H 1.07998 * 119.99561 * 359.97438 * 22 21 15 24 24 C 1.38804 * 119.99850 * 179.97438 * 22 21 15 25 25 N 1.31615 * 120.00424 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 119.99905 * 180.02562 * 24 22 21 27 27 H 1.48499 * 109.47280 * 89.99830 * 26 24 22 28 28 H 1.48503 * 109.47280 * 210.00285 * 26 24 22 29 29 H 1.48503 * 109.47128 * 329.99900 * 26 24 22 30 30 C 1.48916 * 119.82484 * 174.98563 * 12 10 9 31 31 H 1.08997 * 109.47371 * 294.84742 * 1 2 3 32 32 H 1.08997 * 109.47079 * 54.84532 * 1 2 3 33 33 H 1.09005 * 109.47253 * 174.85066 * 1 2 3 34 34 H 1.08995 * 109.47470 * 179.97438 * 3 2 1 35 35 H 1.09007 * 109.47104 * 299.99948 * 3 2 1 36 36 H 1.09002 * 109.47497 * 59.99695 * 3 2 1 37 37 H 1.09006 * 109.47223 * 306.65369 * 4 2 1 38 38 H 1.09002 * 109.47157 * 66.64600 * 4 2 1 39 39 H 1.08993 * 109.47661 * 186.64819 * 4 2 1 40 40 H 1.07999 * 125.37900 * 180.02562 * 7 6 5 41 41 H 1.09007 * 109.25701 * 107.51718 * 13 12 10 42 42 H 1.08995 * 109.25682 * 348.08367 * 13 12 10 43 43 H 1.09000 * 109.88631 * 189.49035 * 14 13 12 44 44 H 1.09003 * 109.94350 * 68.44145 * 14 13 12 45 45 H 1.08999 * 110.95971 * 79.04651 * 19 17 15 46 46 H 1.09001 * 110.95106 * 202.73582 * 19 17 15 47 47 H 1.08996 * 109.92214 * 141.85162 * 20 19 17 48 48 H 1.09002 * 109.91702 * 263.15302 * 20 19 17 49 49 H 0.97000 * 120.00553 * 180.02562 * 25 24 22 50 50 H 1.08996 * 109.91504 * 8.97354 * 30 12 10 51 51 H 1.09001 * 110.80541 * 247.01599 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 2.0323 -0.7104 1.2304 6 8 2.7678 -0.1751 2.2179 7 6 3.0095 -1.1309 3.1261 8 7 2.4474 -2.2379 2.7427 9 6 1.8272 -2.0168 1.5521 10 6 1.0701 -3.0047 0.7621 11 8 1.5652 -3.4940 -0.2352 12 7 -0.1706 -3.3657 1.1450 13 6 -0.7209 -2.8508 2.4024 14 6 -1.3377 -3.9925 3.2309 15 6 -2.2823 -4.7514 2.3211 16 1 -2.9906 -4.0535 1.8747 17 6 -1.4339 -5.4074 1.1969 18 1 -0.5920 -5.9660 1.6058 19 6 -2.4811 -6.3481 0.5786 20 6 -3.2318 -6.8619 1.8372 21 7 -3.0112 -5.8637 2.9108 22 6 -3.4175 -5.9692 4.2144 23 1 -3.1997 -5.1756 4.9137 24 6 -4.1093 -7.0960 4.6366 25 7 -4.3744 -8.0633 3.7843 26 14 -4.6642 -7.2397 6.4145 27 1 -6.0225 -6.6569 6.5577 28 1 -4.6954 -8.6709 6.8092 29 1 -3.7157 -6.5054 7.2899 30 6 -0.9751 -4.2776 0.2854 31 1 -0.3634 0.4318 0.9325 32 1 -0.3633 0.5917 -0.8402 33 1 -0.3634 -1.0235 -0.0922 34 1 3.1299 1.4425 0.0005 35 1 1.6766 1.9563 -0.8900 36 1 1.6766 1.9564 0.8900 37 1 1.5827 -1.7089 -1.3107 38 1 1.7771 -0.1434 -2.1352 39 1 3.1234 -0.8255 -1.1917 40 1 3.5775 -1.0003 4.0353 41 1 -1.4900 -2.1106 2.1818 42 1 0.0762 -2.3796 2.9774 43 1 -1.8885 -3.5811 4.0767 44 1 -0.5525 -4.6585 3.5886 45 1 -3.1549 -5.8016 -0.0813 46 1 -2.0012 -7.1706 0.0481 47 1 -4.2971 -6.9498 1.6241 48 1 -2.8300 -7.8287 2.1403 49 1 -4.8582 -8.8507 4.0793 50 1 -0.3544 -4.6740 -0.5182 51 1 -1.8385 -3.7574 -0.1292 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036864950.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:29:16 Heat of formation + Delta-G solvation = -4.994950 kcal Electronic energy + Delta-G solvation = -32609.489374 eV Core-core repulsion = 28510.425996 eV Total energy + Delta-G solvation = -4099.063377 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -44.50946 -41.42946 -39.76183 -37.94436 -36.84163 -35.85810 -34.51767 -33.07662 -31.65298 -30.66076 -29.64472 -28.29411 -28.26265 -26.81270 -25.93160 -24.12040 -23.84499 -23.77427 -21.92214 -21.55203 -20.85974 -20.25384 -18.98070 -18.21883 -17.97493 -17.28776 -17.05267 -16.84439 -16.54314 -16.13491 -15.85341 -15.68813 -15.32733 -15.11470 -14.99487 -14.63510 -14.58029 -14.36669 -14.11521 -13.91573 -13.36865 -13.31952 -13.17490 -13.11024 -13.09360 -12.71499 -12.67294 -12.61092 -12.52970 -12.44280 -12.13652 -12.05548 -12.01188 -11.95921 -11.79727 -11.61881 -11.57459 -11.53031 -11.21132 -10.99954 -10.70638 -9.93700 -9.79302 -8.87277 -7.83178 -5.17555 0.26636 1.16197 1.45405 1.47000 1.47537 1.54966 1.55466 1.89289 2.50464 3.08239 3.35373 3.37273 3.46160 3.65856 3.77009 3.82196 3.85724 3.90719 3.99651 4.03174 4.14784 4.19586 4.34565 4.45089 4.50938 4.51939 4.62379 4.67450 4.68840 4.75492 4.76370 4.77018 4.79578 4.85398 4.91400 4.93274 4.97333 5.02449 5.07562 5.14727 5.17491 5.22587 5.29066 5.35110 5.43020 5.50993 5.53020 5.66766 5.76994 6.17864 6.21107 6.52037 6.90219 7.09769 7.79782 8.48232 9.28661 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.017496 B = 0.002977 C = 0.002748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.960155 B = 9403.453774 C =10188.543204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.013 3.987 3 C -0.137 4.137 4 C -0.149 4.149 5 C 0.028 3.972 6 O -0.191 6.191 7 C 0.193 3.807 8 N -0.503 5.503 9 C -0.081 4.081 10 C 0.607 3.393 11 O -0.558 6.558 12 N -0.593 5.593 13 C 0.127 3.873 14 C -0.118 4.118 15 C 0.160 3.840 16 H 0.031 0.969 17 C -0.111 4.111 18 H 0.055 0.945 19 C -0.119 4.119 20 C 0.182 3.818 21 N -0.616 5.616 22 C -0.230 4.230 23 H 0.085 0.915 24 C -0.070 4.070 25 N -0.954 5.954 26 Si 0.974 3.026 27 H -0.285 1.285 28 H -0.298 1.298 29 H -0.269 1.269 30 C 0.137 3.863 31 H 0.066 0.934 32 H 0.095 0.905 33 H 0.046 0.954 34 H 0.059 0.941 35 H 0.087 0.913 36 H 0.066 0.934 37 H 0.056 0.944 38 H 0.092 0.908 39 H 0.050 0.950 40 H 0.302 0.698 41 H 0.087 0.913 42 H 0.085 0.915 43 H 0.074 0.926 44 H 0.045 0.955 45 H 0.085 0.915 46 H 0.077 0.923 47 H 0.007 0.993 48 H 0.014 0.986 49 H 0.245 0.755 50 H 0.092 0.908 51 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.102 22.573 -7.935 27.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.012 3.988 3 C -0.194 4.194 4 C -0.206 4.206 5 C -0.028 4.028 6 O -0.077 6.077 7 C -0.034 4.034 8 N -0.232 5.232 9 C -0.200 4.200 10 C 0.394 3.606 11 O -0.437 6.437 12 N -0.325 5.325 13 C 0.004 3.996 14 C -0.157 4.157 15 C 0.053 3.947 16 H 0.049 0.951 17 C -0.131 4.131 18 H 0.074 0.926 19 C -0.158 4.158 20 C 0.057 3.943 21 N -0.341 5.341 22 C -0.359 4.359 23 H 0.103 0.897 24 C -0.262 4.262 25 N -0.603 5.603 26 Si 0.803 3.197 27 H -0.212 1.212 28 H -0.225 1.225 29 H -0.193 1.193 30 C 0.016 3.984 31 H 0.085 0.915 32 H 0.114 0.886 33 H 0.065 0.935 34 H 0.078 0.922 35 H 0.106 0.894 36 H 0.085 0.915 37 H 0.075 0.925 38 H 0.111 0.889 39 H 0.069 0.931 40 H 0.316 0.684 41 H 0.106 0.894 42 H 0.103 0.897 43 H 0.093 0.907 44 H 0.063 0.937 45 H 0.103 0.897 46 H 0.095 0.905 47 H 0.026 0.974 48 H 0.032 0.968 49 H 0.054 0.946 50 H 0.111 0.889 51 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 13.244 21.622 -7.967 26.578 hybrid contribution -0.364 -0.662 1.178 1.400 sum 12.879 20.960 -6.789 25.521 Atomic orbital electron populations 1.21997 0.91310 1.02560 1.04123 1.19438 0.96627 0.96266 0.86432 1.21859 1.01519 0.92113 1.03917 1.22097 1.01134 1.01159 0.96176 1.23860 0.95211 0.91628 0.92092 1.84369 1.54646 1.41117 1.27562 1.29121 0.98979 0.79378 0.95969 1.70851 1.12814 1.28967 1.10536 1.21169 1.07948 0.94623 0.96253 1.17059 0.80635 0.79713 0.83225 1.90742 1.69304 1.55157 1.28453 1.48507 1.14531 1.47033 1.22384 1.21684 0.98976 0.95443 0.83489 1.21744 0.98230 0.97157 0.98574 1.20869 0.91326 0.89740 0.92734 0.95136 1.22467 0.97144 0.96163 0.97347 0.92640 1.22588 0.97148 0.99044 0.97022 1.21321 0.95756 0.91390 0.85790 1.44528 1.64409 1.18634 1.06514 1.19390 1.28360 1.02398 0.85726 0.89675 1.25614 1.01941 0.96846 1.01837 1.70161 1.46431 1.09154 1.34562 0.85137 0.78256 0.76329 0.80011 1.21219 1.22528 1.19333 1.21853 0.95338 0.88935 0.92281 0.91459 0.88615 0.93530 0.92185 0.89420 0.91519 0.92495 0.88943 0.93115 0.68362 0.89443 0.89720 0.90700 0.93660 0.89663 0.90464 0.97430 0.96758 0.94598 0.88917 0.88124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.13 8.30 71.98 0.60 -1.53 16 2 C 0.01 0.21 0.80 -52.93 -0.04 0.17 16 3 C -0.14 -1.53 8.07 71.98 0.58 -0.95 16 4 C -0.15 -2.73 8.18 71.98 0.59 -2.14 16 5 C 0.03 0.60 5.73 25.19 0.14 0.74 16 6 O -0.19 -3.39 10.19 0.36 0.00 -3.39 16 7 C 0.19 3.15 13.19 130.52 1.72 4.88 16 8 N -0.50 -13.12 10.66 -305.15 -3.25 -16.37 16 9 C -0.08 -2.19 4.92 40.41 0.20 -1.99 16 10 C 0.61 18.83 5.34 86.66 0.46 19.30 16 11 O -0.56 -20.03 14.33 -4.08 -0.06 -20.09 16 12 N -0.59 -17.24 2.79 -818.73 -2.29 -19.53 16 13 C 0.13 3.48 6.20 86.68 0.54 4.02 16 14 C -0.12 -4.13 5.45 30.43 0.17 -3.96 16 15 C 0.16 6.33 2.57 45.51 0.12 6.45 16 16 H 0.03 1.19 7.93 -2.39 -0.02 1.17 16 17 C -0.11 -3.94 2.84 -9.98 -0.03 -3.97 16 18 H 0.06 2.27 8.12 -2.39 -0.02 2.25 16 19 C -0.12 -4.35 6.53 31.63 0.21 -4.15 16 20 C 0.18 9.09 5.45 86.83 0.47 9.56 16 21 N -0.62 -31.41 3.35 -669.65 -2.24 -33.65 16 22 C -0.23 -12.74 9.86 84.03 0.83 -11.91 16 23 H 0.09 4.47 7.18 -2.91 -0.02 4.45 16 24 C -0.07 -4.00 5.49 84.86 0.47 -3.54 16 25 N -0.95 -58.19 10.44 21.65 0.23 -57.97 16 26 Si 0.97 46.13 29.55 68.60 2.03 48.16 16 27 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 28 H -0.30 -14.38 7.11 99.48 0.71 -13.68 16 29 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 30 C 0.14 3.92 6.05 85.66 0.52 4.44 16 31 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.05 0.88 6.66 -2.38 -0.02 0.86 16 34 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 35 H 0.09 0.66 8.14 -2.38 -0.02 0.64 16 36 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 37 H 0.06 1.39 5.08 -2.38 -0.01 1.38 16 38 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.05 0.99 8.14 -2.39 -0.02 0.98 16 40 H 0.30 1.30 8.06 -2.91 -0.02 1.27 16 41 H 0.09 2.01 8.14 -2.38 -0.02 1.99 16 42 H 0.08 2.28 5.81 -2.39 -0.01 2.27 16 43 H 0.07 2.61 7.59 -2.39 -0.02 2.59 16 44 H 0.04 1.79 8.12 -2.39 -0.02 1.77 16 45 H 0.08 2.69 8.11 -2.39 -0.02 2.67 16 46 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 47 H 0.01 0.41 7.77 -2.39 -0.02 0.39 16 48 H 0.01 0.81 7.22 -2.39 -0.02 0.79 16 49 H 0.24 14.60 8.31 -92.71 -0.77 13.83 16 50 H 0.09 2.71 7.01 -2.39 -0.02 2.69 16 51 H 0.10 2.41 8.08 -2.39 -0.02 2.39 16 Total: -1.00 -76.39 391.91 2.87 -73.51 By element: Atomic # 1 Polarization: 12.98 SS G_CDS: 0.92 Total: 13.90 kcal Atomic # 6 Polarization: 7.88 SS G_CDS: 7.54 Total: 15.42 kcal Atomic # 7 Polarization: -119.96 SS G_CDS: -7.56 Total: -127.51 kcal Atomic # 8 Polarization: -23.42 SS G_CDS: -0.05 Total: -23.47 kcal Atomic # 14 Polarization: 46.13 SS G_CDS: 2.03 Total: 48.16 kcal Total: -76.39 2.87 -73.51 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036864950.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.516 kcal (2) G-P(sol) polarization free energy of solvation -76.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds