Wall clock time and date at job start Wed Apr 1 2020 05:18:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52995 * 109.47289 * 2 1 4 4 C 1.50697 * 109.47288 * 179.97438 * 3 2 1 5 5 N 1.30621 * 125.42759 * 89.97032 * 4 3 2 6 6 C 1.33690 * 108.99657 * 180.02562 * 5 4 3 7 7 C 1.50704 * 126.26949 * 179.97438 * 6 5 4 8 8 C 1.36339 * 107.45313 * 0.02562 * 6 5 4 9 9 C 1.46724 * 126.64116 * 179.97438 * 8 6 5 10 10 O 1.21682 * 119.99814 * 351.95446 * 9 8 6 11 11 N 1.34773 * 120.00232 * 172.23631 * 9 8 6 12 12 C 1.46605 * 119.68167 * 1.62037 * 11 9 8 13 13 C 1.54793 * 110.71153 * 228.03673 * 12 11 9 14 14 C 1.51521 * 106.79765 * 308.79958 * 13 12 11 15 15 H 1.09000 * 109.28647 * 306.62512 * 14 13 12 16 16 C 1.55369 * 107.78632 * 65.19159 * 14 13 12 17 17 H 1.09000 * 111.50665 * 49.83027 * 16 14 13 18 18 C 1.53745 * 100.22017 * 168.51023 * 16 14 13 19 19 C 1.55284 * 101.83933 * 320.90219 * 18 16 14 20 20 N 1.45476 * 116.86575 * 181.93129 * 14 13 12 21 21 C 1.36934 * 126.40116 * 30.89047 * 20 14 13 22 22 H 1.07996 * 120.00465 * 359.97438 * 21 20 14 23 23 C 1.38819 * 119.99771 * 179.97438 * 21 20 14 24 24 N 1.31621 * 119.99765 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 120.00188 * 179.97438 * 23 21 20 26 26 H 1.48505 * 109.46671 * 59.99680 * 25 23 21 27 27 H 1.48494 * 109.47236 * 179.97438 * 25 23 21 28 28 H 1.48505 * 109.47291 * 300.00535 * 25 23 21 29 29 C 1.47716 * 119.69119 * 181.90151 * 11 9 8 30 30 O 1.33663 * 125.42292 * 270.28468 * 4 3 2 31 31 H 1.09005 * 109.47372 * 300.00205 * 1 2 3 32 32 H 1.09002 * 109.47045 * 60.00487 * 1 2 3 33 33 H 1.09001 * 109.47822 * 180.02562 * 1 2 3 34 34 H 1.08999 * 109.47065 * 239.99143 * 2 1 3 35 35 H 1.09007 * 109.46887 * 119.99969 * 2 1 3 36 36 H 1.08996 * 109.47291 * 59.99698 * 3 2 1 37 37 H 1.09002 * 109.46679 * 299.99737 * 3 2 1 38 38 H 1.08998 * 109.47322 * 270.00344 * 7 6 5 39 39 H 1.09000 * 109.46816 * 30.00164 * 7 6 5 40 40 H 1.08998 * 109.46892 * 150.00272 * 7 6 5 41 41 H 1.08991 * 109.25906 * 348.13860 * 12 11 9 42 42 H 1.09000 * 109.25317 * 107.57074 * 12 11 9 43 43 H 1.09001 * 109.86901 * 189.67410 * 13 12 11 44 44 H 1.08994 * 110.49178 * 68.27880 * 13 12 11 45 45 H 1.09001 * 110.95233 * 79.03836 * 18 16 14 46 46 H 1.08993 * 110.95039 * 202.76511 * 18 16 14 47 47 H 1.09000 * 109.92296 * 263.12999 * 19 18 16 48 48 H 1.09000 * 110.08744 * 141.92684 * 19 18 16 49 49 H 0.97005 * 119.99680 * 179.97438 * 24 23 21 50 50 H 1.08997 * 110.07182 * 247.12700 * 29 11 9 51 51 H 1.09004 * 110.06473 * 8.70281 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5469 1.4424 0.0006 5 7 4.3046 1.4417 -1.0634 6 6 5.5867 1.4414 -0.6847 7 6 6.7859 1.4401 -1.5974 8 6 5.6105 1.4414 0.6785 9 6 6.8028 1.4405 1.5335 10 8 7.9052 1.2923 1.0400 11 7 6.6767 1.5983 2.8660 12 6 5.3423 1.7344 3.4578 13 6 5.2973 2.9328 4.4366 14 6 6.4657 2.7662 5.3868 15 1 6.4261 1.7737 5.8355 16 6 7.7735 2.9011 4.5591 17 1 7.7602 3.7935 3.9333 18 6 8.8048 3.0095 5.6942 19 6 8.0533 3.8962 6.7238 20 7 6.6059 3.7628 6.4374 21 6 5.5899 4.4493 7.0470 22 1 4.5657 4.2701 6.7551 23 6 5.8766 5.3756 8.0404 24 7 7.1248 5.5936 8.3965 25 14 4.4908 6.3127 8.8717 26 1 3.5700 5.3524 9.5314 27 1 5.0570 7.2339 9.8895 28 1 3.7436 7.0962 7.8552 29 6 7.8844 1.6386 3.7156 30 8 4.3212 1.4372 1.0902 31 1 -0.3634 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3635 -1.0276 0.0005 34 1 1.8933 -0.5140 -0.8899 35 1 1.8933 -0.5139 0.8901 36 1 1.6766 1.9563 0.8899 37 1 1.6766 1.9562 -0.8900 38 1 7.0745 0.4121 -1.8167 39 1 6.5362 1.9533 -2.5261 40 1 7.6143 1.9538 -1.1097 41 1 4.6121 1.8953 2.6649 42 1 5.0926 0.8197 3.9954 43 1 4.3610 2.9203 4.9946 44 1 5.3923 3.8729 3.8934 45 1 9.0273 2.0283 6.1136 46 1 9.7149 3.4995 5.3484 47 1 8.3597 4.9363 6.6119 48 1 8.2644 3.5542 7.7370 49 1 7.3251 6.2412 9.0904 50 1 7.9181 0.7600 4.3598 51 1 8.7782 1.6820 3.0931 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036869459.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:18:10 Heat of formation + Delta-G solvation = 16.147354 kcal Electronic energy + Delta-G solvation = -31714.226248 eV Core-core repulsion = 27616.079670 eV Total energy + Delta-G solvation = -4098.146578 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -43.68261 -40.16156 -38.32771 -36.03707 -35.66666 -35.01877 -32.77766 -31.81728 -31.59168 -29.83727 -28.69500 -28.34019 -27.14885 -24.93795 -23.77913 -22.80788 -22.54607 -21.82730 -21.33471 -20.37906 -20.01918 -19.36992 -17.41439 -17.14780 -16.61059 -16.18920 -16.11599 -15.46204 -15.18222 -15.02271 -14.68128 -14.47000 -13.97923 -13.87482 -13.76863 -13.50629 -13.31915 -13.16839 -13.04094 -12.68028 -12.60310 -12.48415 -12.29338 -12.07075 -11.78782 -11.71713 -11.53803 -11.44894 -11.21336 -11.12108 -11.04681 -10.83137 -10.80070 -10.54320 -10.27982 -10.16537 -10.00388 -9.89229 -9.64634 -9.51702 -9.05083 -8.65147 -8.56685 -6.87294 -5.74578 -3.07955 0.67030 2.14684 2.21493 2.91406 3.05235 3.37415 3.41765 3.43322 3.60885 4.33904 4.45936 4.48510 4.50763 4.59785 4.72699 4.99130 5.00144 5.07021 5.13787 5.20768 5.25666 5.31296 5.33091 5.36386 5.49682 5.51751 5.53584 5.58472 5.64246 5.65395 5.72304 5.76370 5.83100 5.84287 5.94228 5.97568 6.12340 6.13463 6.16689 6.20235 6.29692 6.43161 6.56194 6.59538 6.75953 7.01746 7.22254 7.44894 7.51759 7.58085 7.77914 7.95538 8.21306 9.16140 9.79654 10.47667 11.37879 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011093 B = 0.003085 C = 0.002533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2523.538088 B = 9073.666881 C =11050.892940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.122 4.122 3 C -0.029 4.029 4 C 0.212 3.788 5 N -0.487 5.487 6 C 0.078 3.922 7 C -0.077 4.077 8 C -0.112 4.112 9 C 0.603 3.397 10 O -0.523 6.523 11 N -0.593 5.593 12 C 0.094 3.906 13 C -0.126 4.126 14 C 0.166 3.834 15 H 0.021 0.979 16 C -0.125 4.125 17 H 0.080 0.920 18 C -0.134 4.134 19 C 0.176 3.824 20 N -0.595 5.595 21 C -0.228 4.228 22 H 0.078 0.922 23 C -0.007 4.007 24 N -0.921 5.921 25 Si 0.910 3.090 26 H -0.285 1.285 27 H -0.290 1.290 28 H -0.285 1.285 29 C 0.127 3.873 30 O -0.176 6.176 31 H 0.059 0.941 32 H 0.058 0.942 33 H 0.060 0.940 34 H 0.071 0.929 35 H 0.069 0.931 36 H 0.098 0.902 37 H 0.108 0.892 38 H 0.081 0.919 39 H 0.075 0.925 40 H 0.092 0.908 41 H 0.100 0.900 42 H 0.069 0.931 43 H 0.078 0.922 44 H 0.068 0.932 45 H 0.059 0.941 46 H 0.062 0.938 47 H 0.055 0.945 48 H 0.039 0.961 49 H 0.253 0.747 50 H 0.073 0.927 51 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.249 -11.093 -17.129 21.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.160 4.160 3 C -0.067 4.067 4 C 0.007 3.993 5 N -0.217 5.217 6 C -0.046 4.046 7 C -0.134 4.134 8 C -0.167 4.167 9 C 0.390 3.610 10 O -0.402 6.402 11 N -0.324 5.324 12 C -0.028 4.028 13 C -0.166 4.166 14 C 0.058 3.942 15 H 0.038 0.962 16 C -0.146 4.146 17 H 0.099 0.901 18 C -0.173 4.173 19 C 0.052 3.948 20 N -0.319 5.319 21 C -0.356 4.356 22 H 0.095 0.905 23 C -0.204 4.204 24 N -0.568 5.568 25 Si 0.741 3.259 26 H -0.212 1.212 27 H -0.216 1.216 28 H -0.212 1.212 29 C 0.006 3.994 30 O -0.064 6.064 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.090 0.910 35 H 0.088 0.912 36 H 0.117 0.883 37 H 0.127 0.873 38 H 0.100 0.900 39 H 0.094 0.906 40 H 0.111 0.889 41 H 0.118 0.882 42 H 0.087 0.913 43 H 0.096 0.904 44 H 0.087 0.913 45 H 0.078 0.922 46 H 0.081 0.919 47 H 0.073 0.927 48 H 0.057 0.943 49 H 0.063 0.937 50 H 0.092 0.908 51 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -6.945 -10.993 -17.688 21.953 hybrid contribution -0.619 0.621 1.317 1.582 sum -7.564 -10.373 -16.371 20.804 Atomic orbital electron populations 1.21754 0.94396 1.02380 1.02352 1.21537 0.96702 0.94436 1.03312 1.20315 0.80784 0.99834 1.05749 1.26686 0.96542 0.96703 0.79376 1.70333 1.01494 1.19857 1.29991 1.22030 0.93478 0.97862 0.91214 1.20338 0.92146 1.03623 0.97317 1.22973 0.82375 1.16232 0.95071 1.16544 0.85448 0.77592 0.81445 1.90828 1.24270 1.51576 1.73536 1.48224 1.08802 1.69794 1.05593 1.22491 0.82651 0.99537 0.98111 1.22039 1.00895 0.96800 0.96829 1.20685 0.91844 0.93261 0.88433 0.96158 1.22657 0.98899 0.96785 0.96215 0.90130 1.22696 0.97376 1.00637 0.96588 1.21539 0.81859 0.97205 0.94188 1.44204 1.02849 1.44937 1.39923 1.18940 0.86812 1.15654 1.14165 0.90456 1.24794 0.96460 0.99746 0.99359 1.69929 1.16206 1.37506 1.33208 0.86231 0.81043 0.79606 0.79069 1.21179 1.21597 1.21200 1.21737 0.86609 0.98387 0.92638 1.84691 1.16396 1.69606 1.35751 0.92158 0.92264 0.92105 0.91018 0.91230 0.88315 0.87349 0.90021 0.90591 0.88897 0.88249 0.91300 0.90392 0.91345 0.92223 0.91937 0.92724 0.94264 0.93673 0.90835 0.88868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.75 9.91 37.15 0.37 -0.38 16 2 C -0.12 -0.78 5.92 -26.74 -0.16 -0.93 16 3 C -0.03 -0.21 5.84 -27.89 -0.16 -0.37 16 4 C 0.21 2.39 7.57 -12.79 -0.10 2.29 16 5 N -0.49 -6.32 11.26 -7.07 -0.08 -6.40 16 6 C 0.08 1.06 7.16 -82.47 -0.59 0.47 16 7 C -0.08 -0.87 9.80 36.01 0.35 -0.52 16 8 C -0.11 -1.60 6.82 -36.84 -0.25 -1.85 16 9 C 0.60 9.35 7.64 -12.83 -0.10 9.26 16 10 O -0.52 -8.84 14.28 5.20 0.07 -8.77 16 11 N -0.59 -8.94 3.00 -173.49 -0.52 -9.46 16 12 C 0.09 1.34 6.12 -3.04 -0.02 1.32 16 13 C -0.13 -2.16 5.52 -26.53 -0.15 -2.30 16 14 C 0.17 3.27 2.57 -67.97 -0.17 3.09 16 15 H 0.02 0.42 7.92 -51.93 -0.41 0.01 16 16 C -0.13 -2.20 2.86 -89.36 -0.26 -2.45 16 17 H 0.08 1.54 8.11 -51.93 -0.42 1.12 16 18 C -0.13 -2.43 6.54 -25.13 -0.16 -2.60 16 19 C 0.18 4.18 5.45 -1.92 -0.01 4.17 16 20 N -0.59 -14.62 3.35 -163.09 -0.55 -15.17 16 21 C -0.23 -6.11 9.86 -15.06 -0.15 -6.26 16 22 H 0.08 1.98 7.18 -52.49 -0.38 1.60 16 23 C -0.01 -0.20 5.49 -17.43 -0.10 -0.29 16 24 N -0.92 -26.69 10.43 55.49 0.58 -26.11 16 25 Si 0.91 21.71 29.55 -169.99 -5.02 16.68 16 26 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 27 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 28 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 29 C 0.13 1.92 5.95 -3.76 -0.02 1.90 16 30 O -0.18 -2.25 7.26 4.44 0.03 -2.22 16 31 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 33 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 36 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.11 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 39 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.09 1.13 6.67 -51.93 -0.35 0.78 16 41 H 0.10 1.33 3.87 -54.96 -0.21 1.12 16 42 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 43 H 0.08 1.33 7.59 -51.93 -0.39 0.93 16 44 H 0.07 1.25 8.11 -51.93 -0.42 0.83 16 45 H 0.06 0.99 8.12 -51.93 -0.42 0.57 16 46 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 47 H 0.05 1.45 7.21 -51.93 -0.37 1.07 16 48 H 0.04 1.02 7.76 -51.93 -0.40 0.62 16 49 H 0.25 7.16 8.31 -40.82 -0.34 6.83 16 50 H 0.07 1.03 8.08 -51.93 -0.42 0.61 16 51 H 0.09 1.39 7.01 -51.93 -0.36 1.03 16 LS Contribution 396.96 15.07 5.98 5.98 Total: -1.00 -31.58 396.96 -9.53 -41.10 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: -8.35 Total: -0.19 kcal Atomic # 6 Polarization: 6.21 SS G_CDS: -1.67 Total: 4.54 kcal Atomic # 7 Polarization: -56.57 SS G_CDS: -0.57 Total: -57.14 kcal Atomic # 8 Polarization: -11.10 SS G_CDS: 0.11 Total: -10.99 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -31.58 -9.53 -41.10 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036869459.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.252 kcal (2) G-P(sol) polarization free energy of solvation -31.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.104 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds