Wall clock time and date at job start Wed Apr 1 2020 05:18:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52995 * 109.47289 * 2 1 4 4 C 1.50697 * 109.47288 * 179.97438 * 3 2 1 5 5 N 1.30621 * 125.42759 * 89.97032 * 4 3 2 6 6 C 1.33690 * 108.99657 * 180.02562 * 5 4 3 7 7 C 1.50704 * 126.26949 * 179.97438 * 6 5 4 8 8 C 1.36339 * 107.45313 * 0.02562 * 6 5 4 9 9 C 1.46724 * 126.64116 * 179.97438 * 8 6 5 10 10 O 1.21682 * 119.99814 * 351.95446 * 9 8 6 11 11 N 1.34773 * 120.00232 * 172.23631 * 9 8 6 12 12 C 1.46605 * 119.68167 * 1.62037 * 11 9 8 13 13 C 1.54793 * 110.71153 * 228.03673 * 12 11 9 14 14 C 1.51521 * 106.79765 * 308.79958 * 13 12 11 15 15 H 1.09000 * 109.28647 * 306.62512 * 14 13 12 16 16 C 1.55369 * 107.78632 * 65.19159 * 14 13 12 17 17 H 1.09000 * 111.50665 * 49.83027 * 16 14 13 18 18 C 1.53745 * 100.22017 * 168.51023 * 16 14 13 19 19 C 1.55284 * 101.83933 * 320.90219 * 18 16 14 20 20 N 1.45476 * 116.86575 * 181.93129 * 14 13 12 21 21 C 1.36934 * 126.40116 * 30.89047 * 20 14 13 22 22 H 1.07996 * 120.00465 * 359.97438 * 21 20 14 23 23 C 1.38819 * 119.99771 * 179.97438 * 21 20 14 24 24 N 1.31621 * 119.99765 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 120.00188 * 179.97438 * 23 21 20 26 26 H 1.48505 * 109.46671 * 59.99680 * 25 23 21 27 27 H 1.48494 * 109.47236 * 179.97438 * 25 23 21 28 28 H 1.48505 * 109.47291 * 300.00535 * 25 23 21 29 29 C 1.47716 * 119.69119 * 181.90151 * 11 9 8 30 30 O 1.33663 * 125.42292 * 270.28468 * 4 3 2 31 31 H 1.09005 * 109.47372 * 300.00205 * 1 2 3 32 32 H 1.09002 * 109.47045 * 60.00487 * 1 2 3 33 33 H 1.09001 * 109.47822 * 180.02562 * 1 2 3 34 34 H 1.08999 * 109.47065 * 239.99143 * 2 1 3 35 35 H 1.09007 * 109.46887 * 119.99969 * 2 1 3 36 36 H 1.08996 * 109.47291 * 59.99698 * 3 2 1 37 37 H 1.09002 * 109.46679 * 299.99737 * 3 2 1 38 38 H 1.08998 * 109.47322 * 270.00344 * 7 6 5 39 39 H 1.09000 * 109.46816 * 30.00164 * 7 6 5 40 40 H 1.08998 * 109.46892 * 150.00272 * 7 6 5 41 41 H 1.08991 * 109.25906 * 348.13860 * 12 11 9 42 42 H 1.09000 * 109.25317 * 107.57074 * 12 11 9 43 43 H 1.09001 * 109.86901 * 189.67410 * 13 12 11 44 44 H 1.08994 * 110.49178 * 68.27880 * 13 12 11 45 45 H 1.09001 * 110.95233 * 79.03836 * 18 16 14 46 46 H 1.08993 * 110.95039 * 202.76511 * 18 16 14 47 47 H 1.09000 * 109.92296 * 263.12999 * 19 18 16 48 48 H 1.09000 * 110.08744 * 141.92684 * 19 18 16 49 49 H 0.97005 * 119.99680 * 179.97438 * 24 23 21 50 50 H 1.08997 * 110.07182 * 247.12700 * 29 11 9 51 51 H 1.09004 * 110.06473 * 8.70281 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5469 1.4424 0.0006 5 7 4.3046 1.4417 -1.0634 6 6 5.5867 1.4414 -0.6847 7 6 6.7859 1.4401 -1.5974 8 6 5.6105 1.4414 0.6785 9 6 6.8028 1.4405 1.5335 10 8 7.9052 1.2923 1.0400 11 7 6.6767 1.5983 2.8660 12 6 5.3423 1.7344 3.4578 13 6 5.2973 2.9328 4.4366 14 6 6.4657 2.7662 5.3868 15 1 6.4261 1.7737 5.8355 16 6 7.7735 2.9011 4.5591 17 1 7.7602 3.7935 3.9333 18 6 8.8048 3.0095 5.6942 19 6 8.0533 3.8962 6.7238 20 7 6.6059 3.7628 6.4374 21 6 5.5899 4.4493 7.0470 22 1 4.5657 4.2701 6.7551 23 6 5.8766 5.3756 8.0404 24 7 7.1248 5.5936 8.3965 25 14 4.4908 6.3127 8.8717 26 1 3.5700 5.3524 9.5314 27 1 5.0570 7.2339 9.8895 28 1 3.7436 7.0962 7.8552 29 6 7.8844 1.6386 3.7156 30 8 4.3212 1.4372 1.0902 31 1 -0.3634 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3635 -1.0276 0.0005 34 1 1.8933 -0.5140 -0.8899 35 1 1.8933 -0.5139 0.8901 36 1 1.6766 1.9563 0.8899 37 1 1.6766 1.9562 -0.8900 38 1 7.0745 0.4121 -1.8167 39 1 6.5362 1.9533 -2.5261 40 1 7.6143 1.9538 -1.1097 41 1 4.6121 1.8953 2.6649 42 1 5.0926 0.8197 3.9954 43 1 4.3610 2.9203 4.9946 44 1 5.3923 3.8729 3.8934 45 1 9.0273 2.0283 6.1136 46 1 9.7149 3.4995 5.3484 47 1 8.3597 4.9363 6.6119 48 1 8.2644 3.5542 7.7370 49 1 7.3251 6.2412 9.0904 50 1 7.9181 0.7600 4.3598 51 1 8.7782 1.6820 3.0931 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036869459.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:18:09 Heat of formation + Delta-G solvation = -3.657346 kcal Electronic energy + Delta-G solvation = -31715.085045 eV Core-core repulsion = 27616.079670 eV Total energy + Delta-G solvation = -4099.005374 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -44.64478 -41.45619 -39.75884 -37.23783 -36.38548 -36.10470 -34.55486 -33.13582 -32.68201 -31.46007 -29.90119 -29.38963 -28.16874 -26.68204 -25.15555 -24.03115 -23.46634 -22.91715 -22.05238 -21.90483 -21.45559 -20.76571 -18.83166 -18.13950 -18.09873 -17.40108 -17.24321 -16.84972 -16.31415 -16.06952 -15.96891 -15.71913 -15.47544 -15.26267 -14.80942 -14.56830 -14.34046 -14.28707 -14.20948 -14.03204 -13.79917 -13.36702 -13.29976 -13.14706 -13.11339 -13.05944 -12.67712 -12.65903 -12.52005 -12.33255 -12.27124 -12.06241 -11.96544 -11.82376 -11.80860 -11.63357 -11.60299 -11.42316 -11.26687 -11.00238 -10.69956 -10.12477 -9.71060 -8.88015 -7.83415 -5.17966 -0.33910 1.16999 1.25061 1.45888 1.48707 1.54775 1.78896 1.93763 2.50559 2.76754 3.30010 3.35119 3.46707 3.58616 3.73619 3.80848 3.94248 3.99550 4.02764 4.04911 4.15769 4.19260 4.29385 4.38203 4.48088 4.52221 4.62001 4.64298 4.65099 4.67935 4.69374 4.73356 4.75772 4.85473 4.87152 4.91672 4.97348 5.05637 5.09289 5.15454 5.18540 5.25501 5.29123 5.39806 5.45339 5.49844 5.51230 5.65746 5.76773 6.06473 6.20662 6.46443 6.78759 7.09283 7.79380 8.47889 9.28232 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011093 B = 0.003085 C = 0.002533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2523.538088 B = 9073.666881 C =11050.892940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.117 4.117 3 C -0.030 4.030 4 C 0.226 3.774 5 N -0.507 5.507 6 C 0.078 3.922 7 C -0.076 4.076 8 C -0.138 4.138 9 C 0.604 3.396 10 O -0.542 6.542 11 N -0.597 5.597 12 C 0.105 3.895 13 C -0.118 4.118 14 C 0.156 3.844 15 H 0.026 0.974 16 C -0.110 4.110 17 H 0.062 0.938 18 C -0.118 4.118 19 C 0.181 3.819 20 N -0.616 5.616 21 C -0.232 4.232 22 H 0.087 0.913 23 C -0.069 4.069 24 N -0.954 5.954 25 Si 0.974 3.026 26 H -0.275 1.275 27 H -0.298 1.298 28 H -0.277 1.277 29 C 0.136 3.864 30 O -0.180 6.180 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.064 0.936 36 H 0.116 0.884 37 H 0.123 0.877 38 H 0.092 0.908 39 H 0.090 0.910 40 H 0.082 0.918 41 H 0.112 0.888 42 H 0.087 0.913 43 H 0.078 0.922 44 H 0.051 0.949 45 H 0.082 0.918 46 H 0.079 0.921 47 H 0.016 0.984 48 H 0.006 0.994 49 H 0.245 0.755 50 H 0.092 0.908 51 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.138 -12.501 -18.710 24.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.155 4.155 3 C -0.067 4.067 4 C 0.021 3.979 5 N -0.236 5.236 6 C -0.046 4.046 7 C -0.132 4.132 8 C -0.193 4.193 9 C 0.392 3.608 10 O -0.422 6.422 11 N -0.327 5.327 12 C -0.017 4.017 13 C -0.157 4.157 14 C 0.049 3.951 15 H 0.044 0.956 16 C -0.131 4.131 17 H 0.081 0.919 18 C -0.157 4.157 19 C 0.056 3.944 20 N -0.340 5.340 21 C -0.361 4.361 22 H 0.105 0.895 23 C -0.262 4.262 24 N -0.603 5.603 25 Si 0.803 3.197 26 H -0.201 1.201 27 H -0.225 1.225 28 H -0.203 1.203 29 C 0.015 3.985 30 O -0.069 6.069 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.134 0.866 37 H 0.141 0.859 38 H 0.110 0.890 39 H 0.109 0.891 40 H 0.101 0.899 41 H 0.129 0.871 42 H 0.105 0.895 43 H 0.096 0.904 44 H 0.070 0.930 45 H 0.100 0.900 46 H 0.098 0.902 47 H 0.034 0.966 48 H 0.024 0.976 49 H 0.054 0.946 50 H 0.110 0.890 51 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -8.856 -12.433 -19.304 24.610 hybrid contribution -0.103 1.032 1.732 2.019 sum -8.960 -11.401 -17.573 22.783 Atomic orbital electron populations 1.21736 0.93062 1.02795 1.02984 1.21499 0.97725 0.93595 1.02715 1.20637 0.77973 1.00764 1.07358 1.27597 0.97804 0.93895 0.78604 1.70393 1.01394 1.21208 1.30630 1.22415 0.94316 0.96525 0.91375 1.20380 0.91101 1.04322 0.97440 1.22737 0.82634 1.18745 0.95140 1.16642 0.85665 0.77071 0.81439 1.90810 1.25118 1.52454 1.73839 1.48247 1.08962 1.69885 1.05639 1.22440 0.82662 0.98725 0.97839 1.21929 0.99705 0.97478 0.96625 1.20915 0.94219 0.91933 0.87987 0.95614 1.22482 0.97279 0.97572 0.95747 0.91936 1.22564 0.97423 1.00644 0.95085 1.21319 0.82631 0.96113 0.94342 1.44492 1.02743 1.45604 1.41170 1.19370 0.87924 1.15140 1.13647 0.89519 1.25629 0.98635 1.01296 1.00652 1.70161 1.18114 1.38247 1.33801 0.85208 0.78403 0.78226 0.77866 1.20138 1.22482 1.20344 1.21652 0.87037 0.97346 0.92488 1.84628 1.15987 1.69972 1.36300 0.91633 0.91538 0.91849 0.91778 0.91733 0.86553 0.85858 0.88970 0.89113 0.89936 0.87089 0.89523 0.90364 0.93044 0.89975 0.90188 0.96582 0.97582 0.94590 0.89010 0.88393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.91 71.98 0.71 -0.36 16 2 C -0.12 -1.21 5.92 30.59 0.18 -1.03 16 3 C -0.03 -0.34 5.84 29.85 0.17 -0.17 16 4 C 0.23 4.61 7.57 88.29 0.67 5.28 16 5 N -0.51 -12.23 11.26 -291.06 -3.28 -15.51 16 6 C 0.08 2.00 7.16 41.83 0.30 2.30 16 7 C -0.08 -1.61 9.80 71.24 0.70 -0.91 16 8 C -0.14 -3.76 6.82 24.05 0.16 -3.59 16 9 C 0.60 17.90 7.64 86.46 0.66 18.56 16 10 O -0.54 -17.72 14.28 -4.29 -0.06 -17.78 16 11 N -0.60 -16.89 3.00 -821.02 -2.47 -19.36 16 12 C 0.11 2.76 6.12 86.97 0.53 3.29 16 13 C -0.12 -3.90 5.52 30.72 0.17 -3.73 16 14 C 0.16 6.04 2.57 45.51 0.12 6.16 16 15 H 0.03 1.01 7.92 -2.39 -0.02 0.99 16 16 C -0.11 -3.78 2.86 -9.98 -0.03 -3.80 16 17 H 0.06 2.38 8.11 -2.39 -0.02 2.36 16 18 C -0.12 -4.22 6.54 31.63 0.21 -4.02 16 19 C 0.18 8.87 5.45 86.85 0.47 9.34 16 20 N -0.62 -30.75 3.35 -669.90 -2.24 -32.99 16 21 C -0.23 -12.60 9.86 84.04 0.83 -11.78 16 22 H 0.09 4.42 7.18 -2.91 -0.02 4.40 16 23 C -0.07 -3.92 5.49 84.86 0.47 -3.45 16 24 N -0.95 -57.48 10.43 21.65 0.23 -57.25 16 25 Si 0.97 45.27 29.55 68.60 2.03 47.30 16 26 H -0.28 -12.23 7.11 99.48 0.71 -11.53 16 27 H -0.30 -14.14 7.11 99.48 0.71 -13.43 16 28 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 29 C 0.14 3.82 5.95 85.90 0.51 4.33 16 30 O -0.18 -4.25 7.26 -7.03 -0.05 -4.30 16 31 H 0.06 0.42 8.14 -2.38 -0.02 0.40 16 32 H 0.07 0.39 8.14 -2.39 -0.02 0.37 16 33 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 34 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 36 H 0.12 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.12 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 39 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 40 H 0.08 1.95 6.67 -2.39 -0.02 1.93 16 41 H 0.11 2.73 3.87 -50.29 -0.19 2.53 16 42 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 43 H 0.08 2.56 7.59 -2.39 -0.02 2.55 16 44 H 0.05 1.86 8.11 -2.39 -0.02 1.84 16 45 H 0.08 2.58 8.12 -2.39 -0.02 2.56 16 46 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 47 H 0.02 0.89 7.21 -2.39 -0.02 0.87 16 48 H 0.01 0.33 7.76 -2.39 -0.02 0.31 16 49 H 0.24 14.47 8.31 -92.70 -0.77 13.70 16 50 H 0.09 2.29 8.08 -2.39 -0.02 2.27 16 51 H 0.10 2.73 7.01 -2.39 -0.02 2.71 16 Total: -1.00 -70.21 396.96 1.73 -68.49 By element: Atomic # 1 Polarization: 14.25 SS G_CDS: 0.74 Total: 14.99 kcal Atomic # 6 Polarization: 9.58 SS G_CDS: 6.84 Total: 16.42 kcal Atomic # 7 Polarization: -117.35 SS G_CDS: -7.76 Total: -125.11 kcal Atomic # 8 Polarization: -21.97 SS G_CDS: -0.11 Total: -22.08 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.30 kcal Total: -70.21 1.73 -68.49 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036869459.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.828 kcal (2) G-P(sol) polarization free energy of solvation -70.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds