Wall clock time and date at job start Wed Apr 1 2020 04:26:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50701 * 109.46900 * 2 1 4 4 N 1.29936 * 125.37547 * 90.29774 * 3 2 1 5 5 C 1.36070 * 108.47602 * 180.16654 * 4 3 2 6 6 C 1.47420 * 126.45348 * 179.82230 * 5 4 3 7 7 O 1.21604 * 120.00506 * 186.63617 * 6 5 4 8 8 N 1.34780 * 119.99656 * 6.64376 * 6 5 4 9 9 C 1.46928 * 120.62874 * 6.89783 * 8 6 5 10 10 C 1.53196 * 108.77235 * 233.58916 * 9 8 6 11 11 C 1.53045 * 109.31444 * 305.36528 * 10 9 8 12 12 C 1.53043 * 109.53339 * 61.36412 * 11 10 9 13 13 C 1.46925 * 120.62827 * 186.88012 * 8 6 5 14 14 H 1.09004 * 109.58415 * 246.19297 * 13 8 6 15 15 C 1.52997 * 109.58726 * 6.47801 * 13 8 6 16 16 H 1.08999 * 110.64090 * 304.76170 * 15 13 8 17 17 C 1.55153 * 110.71843 * 67.90783 * 15 13 8 18 18 C 1.55119 * 101.48354 * 153.73393 * 17 15 13 19 19 N 1.47424 * 104.94679 * 323.21827 * 18 17 15 20 20 C 1.36933 * 125.65330 * 204.03886 * 19 18 17 21 21 H 1.07999 * 119.99797 * 179.97438 * 20 19 18 22 22 C 1.38810 * 120.00139 * 359.96026 * 20 19 18 23 23 N 1.31626 * 119.99737 * 359.97438 * 22 20 19 24 24 Si 1.86795 * 120.00386 * 179.97438 * 22 20 19 25 25 H 1.48507 * 109.46650 * 59.99947 * 24 22 20 26 26 H 1.48500 * 109.47298 * 179.97438 * 24 22 20 27 27 H 1.48496 * 109.47514 * 300.00528 * 24 22 20 28 28 C 1.47023 * 108.69944 * 24.00528 * 19 18 17 29 29 C 1.36096 * 107.09856 * 359.55898 * 5 4 3 30 30 O 1.34050 * 125.37727 * 269.97734 * 3 2 1 31 31 H 1.09000 * 109.47449 * 299.99407 * 1 2 3 32 32 H 1.08996 * 109.47225 * 60.00505 * 1 2 3 33 33 H 1.09005 * 109.47220 * 179.97438 * 1 2 3 34 34 H 1.08996 * 109.47262 * 240.00131 * 2 1 3 35 35 H 1.09002 * 109.46836 * 119.99585 * 2 1 3 36 36 H 1.08995 * 109.58674 * 353.36988 * 9 8 6 37 37 H 1.08998 * 109.58764 * 113.66258 * 9 8 6 38 38 H 1.09002 * 109.50101 * 65.31751 * 10 9 8 39 39 H 1.09003 * 109.49638 * 185.38255 * 10 9 8 40 40 H 1.08997 * 109.46258 * 181.38569 * 11 10 9 41 41 H 1.09001 * 109.45627 * 301.36093 * 11 10 9 42 42 H 1.09008 * 109.49213 * 178.67980 * 12 11 10 43 43 H 1.09000 * 109.49631 * 58.59136 * 12 11 10 44 44 H 1.09007 * 111.00303 * 271.93543 * 17 15 13 45 45 H 1.08995 * 111.00639 * 35.78927 * 17 15 13 46 46 H 1.08999 * 110.42025 * 204.29010 * 18 17 15 47 47 H 1.09005 * 110.21046 * 82.04438 * 18 17 15 48 48 H 0.96995 * 120.00073 * 179.97438 * 23 22 20 49 49 H 1.08996 * 109.88419 * 239.52724 * 28 19 18 50 50 H 1.09005 * 109.88463 * 118.35605 * 28 19 18 51 51 H 1.08005 * 126.52388 * 180.24039 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2882 2.1282 1.0595 5 6 2.7167 3.3577 0.6639 6 6 3.1105 4.4730 1.5439 7 8 3.3611 5.5636 1.0681 8 7 3.1929 4.2837 2.8758 9 6 3.0415 2.9405 3.4518 10 6 1.9536 2.9859 4.5294 11 6 2.2976 4.0727 5.5506 12 6 2.3438 5.4341 4.8531 13 6 3.4361 5.4166 3.7792 14 1 4.4117 5.3038 4.2522 15 6 3.3993 6.7234 2.9845 16 1 4.1063 6.6891 2.1556 17 6 1.9643 7.0131 2.4705 18 6 1.9868 8.5592 2.3469 19 7 2.7980 9.0201 3.4884 20 6 2.7294 10.2590 4.0677 21 1 3.3690 10.5003 4.9038 22 6 1.8380 11.2048 3.5802 23 7 1.0591 10.9110 2.5606 24 14 1.7439 12.8946 4.3708 25 1 3.0665 13.5625 4.2701 26 1 0.7220 13.7129 3.6699 27 1 1.3691 12.7520 5.8006 28 6 3.6922 7.9290 3.9023 29 6 2.7188 3.3619 -0.6970 30 8 2.2914 2.1524 -1.0930 31 1 -0.3634 0.5137 0.8900 32 1 -0.3633 0.5137 -0.8900 33 1 -0.3634 -1.0277 -0.0005 34 1 1.8934 -0.5138 -0.8899 35 1 1.8933 -0.5138 0.8901 36 1 2.7523 2.2382 2.6701 37 1 3.9856 2.6248 3.8958 38 1 0.9927 3.2122 4.0671 39 1 1.8975 2.0196 5.0307 40 1 1.5378 4.0905 6.3319 41 1 3.2700 3.8591 5.9944 42 1 2.5658 6.2106 5.5852 43 1 1.3793 5.6374 4.3877 44 1 1.7940 6.5434 1.5017 45 1 1.2171 6.6912 3.1958 46 1 0.9757 8.9608 2.4134 47 1 2.4522 8.8551 1.4067 48 1 0.4359 11.5717 2.2202 49 1 3.4946 7.6613 4.9402 50 1 4.7314 8.2379 3.7883 51 1 3.0088 4.1824 -1.3368 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039197940.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:26:27 Heat of formation + Delta-G solvation = 50.995987 kcal Electronic energy + Delta-G solvation = -32465.833254 eV Core-core repulsion = 28369.197826 eV Total energy + Delta-G solvation = -4096.635428 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.68851 -40.53767 -37.41809 -36.72867 -35.34197 -34.33806 -32.85543 -32.59971 -30.80425 -29.73125 -28.69885 -27.29911 -25.58096 -24.72692 -24.21149 -23.91159 -22.65580 -21.52736 -20.86646 -20.08818 -19.44790 -18.80761 -17.46482 -17.02621 -16.82605 -16.36993 -15.65344 -15.22665 -15.08173 -14.95413 -14.78801 -14.40111 -14.36465 -14.03441 -13.70613 -13.59622 -13.37631 -13.09540 -13.00897 -12.69866 -12.36962 -12.23265 -12.03652 -11.70416 -11.67553 -11.59447 -11.36111 -11.26672 -10.99452 -10.89749 -10.71017 -10.61026 -10.46859 -10.15153 -9.97173 -9.86296 -9.57549 -9.54283 -9.31396 -9.10173 -8.68502 -8.46158 -8.20850 -6.62437 -5.48423 -2.89472 0.97890 1.78782 2.32660 3.02126 3.34441 3.48619 3.52136 3.53977 3.58108 4.43422 4.48985 4.61938 4.65880 4.75195 4.87055 4.96754 5.00986 5.08825 5.25451 5.28557 5.32797 5.35628 5.41289 5.48530 5.53768 5.57903 5.59967 5.66537 5.72855 5.82621 5.88194 6.00816 6.06230 6.11238 6.18719 6.24754 6.28256 6.41347 6.43359 6.62696 6.69115 6.82723 6.97204 7.04822 7.12616 7.25126 7.40829 7.62167 7.75497 7.85806 8.07136 8.36939 8.55481 9.39466 10.01069 10.69206 11.54501 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016565 B = 0.002907 C = 0.002673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1689.924530 B = 9630.749496 C =10474.101914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.027 4.027 3 C 0.194 3.806 4 N -0.456 5.456 5 C -0.062 4.062 6 C 0.589 3.411 7 O -0.503 6.503 8 N -0.586 5.586 9 C 0.066 3.934 10 C -0.127 4.127 11 C -0.121 4.121 12 C -0.136 4.136 13 C 0.161 3.839 14 H 0.067 0.933 15 C -0.104 4.104 16 H 0.113 0.887 17 C -0.136 4.136 18 C 0.158 3.842 19 N -0.603 5.603 20 C -0.217 4.217 21 H 0.074 0.926 22 C -0.014 4.014 23 N -0.922 5.922 24 Si 0.912 3.088 25 H -0.287 1.287 26 H -0.291 1.291 27 H -0.286 1.286 28 C 0.136 3.864 29 C 0.009 3.991 30 O -0.196 6.196 31 H 0.066 0.934 32 H 0.061 0.939 33 H 0.073 0.927 34 H 0.094 0.906 35 H 0.107 0.893 36 H 0.147 0.853 37 H 0.054 0.946 38 H 0.063 0.937 39 H 0.067 0.933 40 H 0.061 0.939 41 H 0.058 0.942 42 H 0.080 0.920 43 H 0.077 0.923 44 H 0.067 0.933 45 H 0.051 0.949 46 H 0.099 0.901 47 H 0.008 0.992 48 H 0.250 0.750 49 H 0.020 0.980 50 H 0.015 0.985 51 H 0.232 0.768 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.118 -27.393 -3.849 27.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.065 4.065 3 C -0.014 4.014 4 N -0.187 5.187 5 C -0.181 4.181 6 C 0.376 3.624 7 O -0.380 6.380 8 N -0.318 5.318 9 C -0.056 4.056 10 C -0.165 4.165 11 C -0.159 4.159 12 C -0.174 4.174 13 C 0.058 3.942 14 H 0.085 0.915 15 C -0.123 4.123 16 H 0.130 0.870 17 C -0.174 4.174 18 C 0.033 3.967 19 N -0.328 5.328 20 C -0.346 4.346 21 H 0.092 0.908 22 C -0.210 4.210 23 N -0.571 5.571 24 Si 0.743 3.257 25 H -0.214 1.214 26 H -0.217 1.217 27 H -0.213 1.213 28 C 0.009 3.991 29 C -0.064 4.064 30 O -0.082 6.082 31 H 0.085 0.915 32 H 0.080 0.920 33 H 0.092 0.908 34 H 0.112 0.888 35 H 0.126 0.874 36 H 0.163 0.837 37 H 0.073 0.927 38 H 0.082 0.918 39 H 0.085 0.915 40 H 0.079 0.921 41 H 0.077 0.923 42 H 0.099 0.901 43 H 0.095 0.905 44 H 0.085 0.915 45 H 0.069 0.931 46 H 0.116 0.884 47 H 0.026 0.974 48 H 0.061 0.939 49 H 0.037 0.963 50 H 0.033 0.967 51 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 1.075 -26.819 -3.527 27.071 hybrid contribution 0.128 1.274 -0.064 1.282 sum 1.203 -25.545 -3.591 25.824 Atomic orbital electron populations 1.21800 0.92847 1.03104 1.03269 1.20126 0.97054 0.84002 1.05359 1.26534 0.99124 0.96975 0.78729 1.70334 1.16898 1.03120 1.28338 1.22094 1.08811 0.94004 0.93227 1.16852 0.78432 0.85270 0.81822 1.90870 1.48970 1.22964 1.75168 1.47821 1.69975 1.09074 1.04931 1.22819 0.98180 0.84958 0.99687 1.21816 0.99287 0.98744 0.96641 1.21575 1.01334 0.95229 0.97745 1.22130 1.00359 0.96932 0.97952 1.21274 0.97505 0.85621 0.89776 0.91459 1.22841 1.00914 0.90694 0.97818 0.86975 1.23359 0.94335 1.00114 0.99577 1.21866 0.98846 0.87425 0.88550 1.44484 1.42268 1.10195 1.35885 1.19039 1.16877 0.87912 1.10784 0.90797 1.24774 0.99312 0.98397 0.98472 1.69846 1.26801 1.33461 1.27003 0.86188 0.77149 0.84027 0.78353 1.21367 1.21690 1.21326 1.21443 0.93464 0.88675 0.95497 1.25321 0.98935 0.86369 0.95780 1.84382 1.63396 1.22692 1.37704 0.91526 0.92032 0.90791 0.88752 0.87437 0.83704 0.92744 0.91779 0.91452 0.92063 0.92288 0.90113 0.90467 0.91497 0.93098 0.88357 0.97446 0.93942 0.96251 0.96746 0.75214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.71 9.89 37.16 0.37 -0.34 16 2 C -0.03 -0.13 6.56 -27.88 -0.18 -0.32 16 3 C 0.19 1.77 7.56 -13.08 -0.10 1.67 16 4 N -0.46 -5.16 7.75 -7.65 -0.06 -5.22 16 5 C -0.06 -0.81 6.72 -83.02 -0.56 -1.37 16 6 C 0.59 9.35 6.83 -12.52 -0.09 9.26 16 7 O -0.50 -9.40 10.55 5.27 0.06 -9.35 16 8 N -0.59 -8.68 2.95 -166.48 -0.49 -9.17 16 9 C 0.07 0.79 6.32 -3.71 -0.02 0.77 16 10 C -0.13 -1.41 6.08 -26.61 -0.16 -1.57 16 11 C -0.12 -1.45 5.88 -26.69 -0.16 -1.61 16 12 C -0.14 -2.08 4.78 -26.61 -0.13 -2.21 16 13 C 0.16 2.60 2.72 -67.60 -0.18 2.42 16 14 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 15 C -0.10 -2.09 2.06 -88.79 -0.18 -2.27 16 16 H 0.11 2.43 5.69 -53.11 -0.30 2.13 16 17 C -0.14 -2.99 5.43 -24.47 -0.13 -3.12 16 18 C 0.16 4.27 5.89 -2.42 -0.01 4.25 16 19 N -0.60 -16.73 3.40 -169.94 -0.58 -17.30 16 20 C -0.22 -6.44 10.27 -15.06 -0.15 -6.59 16 21 H 0.07 2.10 7.83 -52.49 -0.41 1.69 16 22 C -0.01 -0.43 5.49 -17.43 -0.10 -0.53 16 23 N -0.92 -28.48 10.09 55.49 0.56 -27.92 16 24 Si 0.91 23.12 29.55 -169.99 -5.02 18.10 16 25 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 26 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 27 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 28 C 0.14 3.12 6.66 -3.06 -0.02 3.10 16 29 C 0.01 0.10 11.95 29.96 0.36 0.46 16 30 O -0.20 -1.94 10.73 6.51 0.07 -1.87 16 31 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 34 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 35 H 0.11 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.15 1.69 3.70 -75.43 -0.28 1.41 16 37 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 40 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 42 H 0.08 1.32 6.48 -51.92 -0.34 0.98 16 43 H 0.08 1.33 5.68 -51.93 -0.30 1.04 16 44 H 0.07 1.46 5.70 -51.93 -0.30 1.17 16 45 H 0.05 1.11 5.43 -51.93 -0.28 0.83 16 46 H 0.10 2.94 5.87 -51.93 -0.31 2.64 16 47 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 48 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 49 H 0.02 0.43 6.03 -51.93 -0.31 0.12 16 50 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 51 H 0.23 2.01 8.06 -52.48 -0.42 1.58 16 LS Contribution 382.09 15.07 5.76 5.76 Total: -1.00 -34.65 382.09 -9.04 -43.69 By element: Atomic # 1 Polarization: 9.16 SS G_CDS: -7.87 Total: 1.29 kcal Atomic # 6 Polarization: 3.44 SS G_CDS: -1.45 Total: 1.99 kcal Atomic # 7 Polarization: -59.05 SS G_CDS: -0.57 Total: -59.61 kcal Atomic # 8 Polarization: -11.34 SS G_CDS: 0.13 Total: -11.21 kcal Atomic # 14 Polarization: 23.12 SS G_CDS: -5.02 Total: 18.10 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -34.65 -9.04 -43.69 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039197940.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.682 kcal (2) G-P(sol) polarization free energy of solvation -34.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.686 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds