Wall clock time and date at job start Wed Apr 1 2020 04:26:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50701 * 109.46900 * 2 1 4 4 N 1.29936 * 125.37547 * 90.29774 * 3 2 1 5 5 C 1.36070 * 108.47602 * 180.16654 * 4 3 2 6 6 C 1.47420 * 126.45348 * 179.82230 * 5 4 3 7 7 O 1.21604 * 120.00506 * 186.63617 * 6 5 4 8 8 N 1.34780 * 119.99656 * 6.64376 * 6 5 4 9 9 C 1.46928 * 120.62874 * 6.89783 * 8 6 5 10 10 C 1.53196 * 108.77235 * 233.58916 * 9 8 6 11 11 C 1.53045 * 109.31444 * 305.36528 * 10 9 8 12 12 C 1.53043 * 109.53339 * 61.36412 * 11 10 9 13 13 C 1.46925 * 120.62827 * 186.88012 * 8 6 5 14 14 H 1.09004 * 109.58415 * 246.19297 * 13 8 6 15 15 C 1.52997 * 109.58726 * 6.47801 * 13 8 6 16 16 H 1.08999 * 110.64090 * 304.76170 * 15 13 8 17 17 C 1.55153 * 110.71843 * 67.90783 * 15 13 8 18 18 C 1.55119 * 101.48354 * 153.73393 * 17 15 13 19 19 N 1.47424 * 104.94679 * 323.21827 * 18 17 15 20 20 C 1.36933 * 125.65330 * 204.03886 * 19 18 17 21 21 H 1.07999 * 119.99797 * 179.97438 * 20 19 18 22 22 C 1.38810 * 120.00139 * 359.96026 * 20 19 18 23 23 N 1.31626 * 119.99737 * 359.97438 * 22 20 19 24 24 Si 1.86795 * 120.00386 * 179.97438 * 22 20 19 25 25 H 1.48507 * 109.46650 * 59.99947 * 24 22 20 26 26 H 1.48500 * 109.47298 * 179.97438 * 24 22 20 27 27 H 1.48496 * 109.47514 * 300.00528 * 24 22 20 28 28 C 1.47023 * 108.69944 * 24.00528 * 19 18 17 29 29 C 1.36096 * 107.09856 * 359.55898 * 5 4 3 30 30 O 1.34050 * 125.37727 * 269.97734 * 3 2 1 31 31 H 1.09000 * 109.47449 * 299.99407 * 1 2 3 32 32 H 1.08996 * 109.47225 * 60.00505 * 1 2 3 33 33 H 1.09005 * 109.47220 * 179.97438 * 1 2 3 34 34 H 1.08996 * 109.47262 * 240.00131 * 2 1 3 35 35 H 1.09002 * 109.46836 * 119.99585 * 2 1 3 36 36 H 1.08995 * 109.58674 * 353.36988 * 9 8 6 37 37 H 1.08998 * 109.58764 * 113.66258 * 9 8 6 38 38 H 1.09002 * 109.50101 * 65.31751 * 10 9 8 39 39 H 1.09003 * 109.49638 * 185.38255 * 10 9 8 40 40 H 1.08997 * 109.46258 * 181.38569 * 11 10 9 41 41 H 1.09001 * 109.45627 * 301.36093 * 11 10 9 42 42 H 1.09008 * 109.49213 * 178.67980 * 12 11 10 43 43 H 1.09000 * 109.49631 * 58.59136 * 12 11 10 44 44 H 1.09007 * 111.00303 * 271.93543 * 17 15 13 45 45 H 1.08995 * 111.00639 * 35.78927 * 17 15 13 46 46 H 1.08999 * 110.42025 * 204.29010 * 18 17 15 47 47 H 1.09005 * 110.21046 * 82.04438 * 18 17 15 48 48 H 0.96995 * 120.00073 * 179.97438 * 23 22 20 49 49 H 1.08996 * 109.88419 * 239.52724 * 28 19 18 50 50 H 1.09005 * 109.88463 * 118.35605 * 28 19 18 51 51 H 1.08005 * 126.52388 * 180.24039 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2882 2.1282 1.0595 5 6 2.7167 3.3577 0.6639 6 6 3.1105 4.4730 1.5439 7 8 3.3611 5.5636 1.0681 8 7 3.1929 4.2837 2.8758 9 6 3.0415 2.9405 3.4518 10 6 1.9536 2.9859 4.5294 11 6 2.2976 4.0727 5.5506 12 6 2.3438 5.4341 4.8531 13 6 3.4361 5.4166 3.7792 14 1 4.4117 5.3038 4.2522 15 6 3.3993 6.7234 2.9845 16 1 4.1063 6.6891 2.1556 17 6 1.9643 7.0131 2.4705 18 6 1.9868 8.5592 2.3469 19 7 2.7980 9.0201 3.4884 20 6 2.7294 10.2590 4.0677 21 1 3.3690 10.5003 4.9038 22 6 1.8380 11.2048 3.5802 23 7 1.0591 10.9110 2.5606 24 14 1.7439 12.8946 4.3708 25 1 3.0665 13.5625 4.2701 26 1 0.7220 13.7129 3.6699 27 1 1.3691 12.7520 5.8006 28 6 3.6922 7.9290 3.9023 29 6 2.7188 3.3619 -0.6970 30 8 2.2914 2.1524 -1.0930 31 1 -0.3634 0.5137 0.8900 32 1 -0.3633 0.5137 -0.8900 33 1 -0.3634 -1.0277 -0.0005 34 1 1.8934 -0.5138 -0.8899 35 1 1.8933 -0.5138 0.8901 36 1 2.7523 2.2382 2.6701 37 1 3.9856 2.6248 3.8958 38 1 0.9927 3.2122 4.0671 39 1 1.8975 2.0196 5.0307 40 1 1.5378 4.0905 6.3319 41 1 3.2700 3.8591 5.9944 42 1 2.5658 6.2106 5.5852 43 1 1.3793 5.6374 4.3877 44 1 1.7940 6.5434 1.5017 45 1 1.2171 6.6912 3.1958 46 1 0.9757 8.9608 2.4134 47 1 2.4522 8.8551 1.4067 48 1 0.4359 11.5717 2.2202 49 1 3.4946 7.6613 4.9402 50 1 4.7314 8.2379 3.7883 51 1 3.0088 4.1824 -1.3368 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039197940.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:26:26 Heat of formation + Delta-G solvation = 28.433154 kcal Electronic energy + Delta-G solvation = -32466.811652 eV Core-core repulsion = 28369.197826 eV Total energy + Delta-G solvation = -4097.613826 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -44.50371 -41.83471 -38.92477 -38.19694 -36.22044 -35.07430 -34.58671 -33.68988 -32.52786 -30.69051 -30.45958 -28.95543 -27.02119 -26.01514 -25.26637 -24.99322 -23.87731 -22.41361 -22.32758 -21.63028 -20.83189 -20.06682 -18.95692 -18.36292 -17.83854 -17.44924 -17.05161 -16.76223 -16.62034 -16.13122 -15.73308 -15.65301 -15.47140 -15.17957 -14.93196 -14.84647 -14.39027 -14.35447 -14.19347 -14.09815 -13.57206 -13.49950 -13.43439 -13.10257 -12.91200 -12.68589 -12.60706 -12.49485 -12.36230 -12.24247 -12.13079 -12.00286 -11.95986 -11.83363 -11.63326 -11.58291 -11.39208 -11.11281 -10.73119 -10.68686 -10.09744 -10.01356 -9.46449 -8.86598 -7.75525 -5.21235 0.09131 0.93667 1.43380 1.48514 1.54789 1.57626 1.93155 2.23768 2.49793 2.80435 3.31701 3.47771 3.71598 3.79133 3.83021 3.87851 4.02742 4.09374 4.21791 4.24955 4.28971 4.31340 4.34432 4.37076 4.41284 4.55354 4.59873 4.61908 4.68923 4.74554 4.83623 4.90463 4.94096 5.01369 5.02591 5.06663 5.09850 5.16057 5.21309 5.23331 5.29982 5.36694 5.43370 5.45464 5.50465 5.57155 5.69971 5.81487 5.88393 6.29219 6.35112 6.55068 7.10395 7.16393 7.78918 8.46473 9.26297 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016565 B = 0.002907 C = 0.002673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1689.924530 B = 9630.749496 C =10474.101914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.026 4.026 3 C 0.205 3.795 4 N -0.470 5.470 5 C -0.089 4.089 6 C 0.584 3.416 7 O -0.545 6.545 8 N -0.586 5.586 9 C 0.063 3.937 10 C -0.120 4.120 11 C -0.114 4.114 12 C -0.132 4.132 13 C 0.166 3.834 14 H 0.084 0.916 15 C -0.087 4.087 16 H 0.098 0.902 17 C -0.113 4.113 18 C 0.165 3.835 19 N -0.623 5.623 20 C -0.240 4.240 21 H 0.082 0.918 22 C -0.073 4.073 23 N -0.953 5.953 24 Si 0.986 3.014 25 H -0.278 1.278 26 H -0.293 1.293 27 H -0.273 1.273 28 C 0.131 3.869 29 C 0.018 3.982 30 O -0.194 6.194 31 H 0.050 0.950 32 H 0.052 0.948 33 H 0.097 0.903 34 H 0.119 0.881 35 H 0.125 0.875 36 H 0.153 0.847 37 H 0.070 0.930 38 H 0.047 0.953 39 H 0.098 0.902 40 H 0.072 0.928 41 H 0.075 0.925 42 H 0.069 0.931 43 H 0.052 0.948 44 H 0.068 0.932 45 H 0.054 0.946 46 H 0.067 0.933 47 H -0.030 1.030 48 H 0.246 0.754 49 H 0.036 0.964 50 H 0.012 0.988 51 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.461 -30.383 -2.652 30.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.064 4.064 3 C -0.004 4.004 4 N -0.200 5.200 5 C -0.208 4.208 6 C 0.372 3.628 7 O -0.425 6.425 8 N -0.317 5.317 9 C -0.058 4.058 10 C -0.159 4.159 11 C -0.152 4.152 12 C -0.170 4.170 13 C 0.063 3.937 14 H 0.102 0.898 15 C -0.106 4.106 16 H 0.116 0.884 17 C -0.151 4.151 18 C 0.040 3.960 19 N -0.349 5.349 20 C -0.369 4.369 21 H 0.100 0.900 22 C -0.265 4.265 23 N -0.603 5.603 24 Si 0.813 3.187 25 H -0.204 1.204 26 H -0.219 1.219 27 H -0.199 1.199 28 C 0.006 3.994 29 C -0.056 4.056 30 O -0.080 6.080 31 H 0.069 0.931 32 H 0.072 0.928 33 H 0.116 0.884 34 H 0.137 0.863 35 H 0.143 0.857 36 H 0.169 0.831 37 H 0.088 0.912 38 H 0.066 0.934 39 H 0.117 0.883 40 H 0.090 0.910 41 H 0.094 0.906 42 H 0.087 0.913 43 H 0.071 0.929 44 H 0.086 0.914 45 H 0.072 0.928 46 H 0.085 0.915 47 H -0.012 1.012 48 H 0.055 0.945 49 H 0.054 0.946 50 H 0.030 0.970 51 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges 1.435 -29.863 -2.286 29.985 hybrid contribution 0.017 2.116 -0.500 2.174 sum 1.453 -27.747 -2.785 27.924 Atomic orbital electron populations 1.21795 0.92613 1.04305 1.02094 1.20454 0.97015 0.81496 1.07433 1.27478 0.97074 0.97916 0.77888 1.70235 1.18005 1.02558 1.29224 1.21774 1.11094 0.94353 0.93556 1.17230 0.77689 0.85550 0.82318 1.90837 1.51001 1.24755 1.75876 1.47930 1.69406 1.09779 1.04590 1.23062 0.99324 0.83265 1.00194 1.21791 0.98012 0.99920 0.96133 1.21546 1.02733 0.93053 0.97857 1.22048 0.98453 0.99072 0.97391 1.21116 0.98808 0.84142 0.89614 0.89791 1.22632 0.98792 0.91987 0.97152 0.88382 1.23107 0.96026 0.96072 0.99894 1.21596 0.96555 0.90742 0.87123 1.44783 1.43303 1.10935 1.35848 1.19486 1.17143 0.89019 1.11222 0.90001 1.25737 0.99021 1.02566 0.99165 1.70124 1.27309 1.34450 1.28373 0.85045 0.77162 0.78733 0.77735 1.20436 1.21900 1.19901 1.21638 0.92394 0.88515 0.96873 1.25598 0.97635 0.86958 0.95360 1.84426 1.63286 1.22311 1.37999 0.93062 0.92849 0.88414 0.86322 0.85673 0.83107 0.91152 0.93365 0.88331 0.90979 0.90591 0.91258 0.92902 0.91415 0.92805 0.91549 1.01171 0.94473 0.94640 0.96974 0.73871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.89 71.98 0.71 -0.31 16 2 C -0.03 -0.17 6.56 29.85 0.20 0.02 16 3 C 0.20 3.30 7.56 88.39 0.67 3.97 16 4 N -0.47 -9.91 7.75 -293.03 -2.27 -12.18 16 5 C -0.09 -2.31 6.72 40.41 0.27 -2.04 16 6 C 0.58 18.66 6.83 86.66 0.59 19.25 16 7 O -0.55 -21.15 10.55 -4.04 -0.04 -21.19 16 8 N -0.59 -16.88 2.95 -798.88 -2.36 -19.24 16 9 C 0.06 1.35 6.32 86.36 0.55 1.89 16 10 C -0.12 -2.33 6.08 30.67 0.19 -2.15 16 11 C -0.11 -2.43 5.88 30.62 0.18 -2.25 16 12 C -0.13 -3.93 4.78 30.67 0.15 -3.78 16 13 C 0.17 5.27 2.72 44.97 0.12 5.39 16 14 H 0.08 2.43 8.14 -2.38 -0.02 2.41 16 15 C -0.09 -3.58 2.06 -9.61 -0.02 -3.60 16 16 H 0.10 4.42 5.69 -21.02 -0.12 4.30 16 17 C -0.11 -5.21 5.43 32.06 0.17 -5.03 16 18 C 0.17 9.48 5.89 86.93 0.51 10.00 16 19 N -0.62 -35.91 3.40 -691.55 -2.35 -38.25 16 20 C -0.24 -14.55 10.27 84.03 0.86 -13.69 16 21 H 0.08 4.70 7.83 -2.91 -0.02 4.68 16 22 C -0.07 -4.44 5.49 84.86 0.47 -3.97 16 23 N -0.95 -61.29 10.09 21.65 0.22 -61.07 16 24 Si 0.99 48.34 29.55 68.60 2.03 50.37 16 25 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 26 H -0.29 -14.34 7.11 99.48 0.71 -13.63 16 27 H -0.27 -12.74 7.11 99.48 0.71 -12.03 16 28 C 0.13 6.16 6.66 86.73 0.58 6.74 16 29 C 0.02 0.39 11.95 67.32 0.80 1.20 16 30 O -0.19 -3.53 10.73 0.38 0.00 -3.53 16 31 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 33 H 0.10 0.23 8.14 -2.38 -0.02 0.21 16 34 H 0.12 0.27 8.14 -2.39 -0.02 0.25 16 35 H 0.13 0.45 8.14 -2.39 -0.02 0.43 16 36 H 0.15 3.18 3.70 -48.79 -0.18 3.00 16 37 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 40 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 41 H 0.08 1.40 8.14 -2.39 -0.02 1.39 16 42 H 0.07 2.21 6.48 -2.38 -0.02 2.19 16 43 H 0.05 1.83 5.68 -2.39 -0.01 1.82 16 44 H 0.07 3.13 5.70 -2.38 -0.01 3.12 16 45 H 0.05 2.44 5.43 -2.39 -0.01 2.43 16 46 H 0.07 4.24 5.87 -2.39 -0.01 4.22 16 47 H -0.03 -1.88 8.14 -2.38 -0.02 -1.90 16 48 H 0.25 15.27 8.31 -92.71 -0.77 14.50 16 49 H 0.04 1.56 6.03 -2.39 -0.01 1.55 16 50 H 0.01 0.58 8.14 -2.38 -0.02 0.56 16 51 H 0.25 4.25 8.06 -2.91 -0.02 4.22 16 Total: -1.00 -79.08 382.09 2.89 -76.19 By element: Atomic # 1 Polarization: 16.61 SS G_CDS: 0.67 Total: 17.27 kcal Atomic # 6 Polarization: 4.63 SS G_CDS: 7.00 Total: 11.63 kcal Atomic # 7 Polarization: -123.98 SS G_CDS: -6.76 Total: -130.75 kcal Atomic # 8 Polarization: -24.68 SS G_CDS: -0.04 Total: -24.72 kcal Atomic # 14 Polarization: 48.34 SS G_CDS: 2.03 Total: 50.37 kcal Total: -79.08 2.89 -76.19 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039197940.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.622 kcal (2) G-P(sol) polarization free energy of solvation -79.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.189 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds