Wall clock time and date at job start Wed Apr 1 2020 05:08:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52994 * 109.47285 * 2 1 4 4 C 1.50699 * 109.47339 * 120.00342 * 2 1 3 5 5 C 1.35313 * 126.67157 * 119.99393 * 4 2 1 6 6 C 1.42270 * 103.92443 * 180.02562 * 5 4 2 7 7 C 1.48334 * 126.93595 * 180.02562 * 6 5 4 8 8 O 1.21500 * 119.99813 * 359.97438 * 7 6 5 9 9 N 1.34772 * 120.00000 * 179.97438 * 7 6 5 10 10 C 1.47490 * 125.66011 * 359.68912 * 9 7 6 11 11 C 1.55030 * 104.90380 * 156.25374 * 10 9 7 12 12 C 1.54477 * 101.53109 * 36.34299 * 11 10 9 13 13 C 1.47177 * 125.66379 * 179.97438 * 9 7 6 14 14 C 1.52243 * 110.29560 * 206.65689 * 12 11 10 15 15 C 1.53163 * 109.65291 * 178.00027 * 14 12 11 16 16 C 1.53193 * 109.26937 * 60.18153 * 15 14 12 17 17 N 1.46923 * 108.92811 * 304.77705 * 16 15 14 18 18 C 1.36941 * 120.70355 * 234.13423 * 17 16 15 19 19 H 1.08007 * 119.99574 * 27.25400 * 18 17 16 20 20 C 1.38802 * 120.00460 * 207.24987 * 18 17 16 21 21 N 1.31625 * 120.00227 * 17.20527 * 20 18 17 22 22 Si 1.86803 * 120.00098 * 197.20250 * 20 18 17 23 23 H 1.48494 * 109.47063 * 60.00482 * 22 20 18 24 24 H 1.48502 * 109.46818 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.47372 * 299.99992 * 22 20 18 26 26 C 1.47077 * 118.60018 * 54.15612 * 17 16 15 27 27 N 1.30978 * 106.12220 * 0.25957 * 6 5 4 28 28 O 1.20904 * 111.44046 * 359.54054 * 27 6 5 29 29 H 1.08994 * 109.46755 * 59.99426 * 1 2 3 30 30 H 1.09000 * 109.47038 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46686 * 299.99898 * 1 2 3 32 32 H 1.09000 * 109.46686 * 240.00102 * 2 1 3 33 33 H 1.09003 * 109.47432 * 179.97438 * 3 2 1 34 34 H 1.09001 * 109.47415 * 300.00613 * 3 2 1 35 35 H 1.09000 * 109.47175 * 60.00401 * 3 2 1 36 36 H 1.08004 * 128.03396 * 0.02562 * 5 4 2 37 37 H 1.08992 * 110.35665 * 275.11093 * 10 9 7 38 38 H 1.09002 * 110.35232 * 37.39766 * 10 9 7 39 39 H 1.09004 * 111.01372 * 278.28060 * 11 10 9 40 40 H 1.08999 * 111.01347 * 154.40658 * 11 10 9 41 41 H 1.09005 * 109.91354 * 300.63380 * 13 9 7 42 42 H 1.09000 * 109.91297 * 61.90021 * 13 9 7 43 43 H 1.08997 * 109.44071 * 298.06085 * 14 12 11 44 44 H 1.09005 * 109.43838 * 57.98150 * 14 12 11 45 45 H 1.08999 * 109.50474 * 180.11716 * 15 14 12 46 46 H 1.09004 * 109.50409 * 300.24580 * 15 14 12 47 47 H 1.08997 * 109.55983 * 64.61407 * 16 15 14 48 48 H 1.09007 * 109.55888 * 184.94413 * 16 15 14 49 49 H 0.96997 * 120.00227 * 180.02562 * 21 20 18 50 50 H 1.09004 * 109.57735 * 187.74618 * 26 17 16 51 51 H 1.08998 * 109.58112 * 67.35799 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0324 -0.7105 1.2304 5 6 2.8134 -1.8150 1.2635 6 6 2.9910 -2.0672 2.6524 7 6 3.7710 -3.1699 3.2655 8 8 4.3416 -3.9765 2.5585 9 7 3.8466 -3.2770 4.6068 10 6 3.2114 -2.3680 5.5792 11 6 3.0638 -3.2086 6.8734 12 6 4.3563 -4.0541 6.8416 13 6 4.5816 -4.3171 5.3445 14 6 4.1502 -5.3622 7.5927 15 6 5.4231 -6.2100 7.5095 16 6 6.5860 -5.4395 8.1426 17 7 6.7038 -4.1304 7.4861 18 6 7.8927 -3.7269 6.9392 19 1 8.6009 -4.4614 6.5849 20 6 8.1875 -2.3742 6.8400 21 7 7.5127 -1.4993 7.5553 22 14 9.5422 -1.7953 5.6915 23 1 9.2146 -2.1939 4.2991 24 1 9.6588 -0.3169 5.7692 25 1 10.8306 -2.4147 6.0936 26 6 5.5181 -3.2621 7.4290 27 7 2.3225 -1.1320 3.2802 28 8 1.7921 -0.3714 2.5045 29 1 -0.3632 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 3.1301 1.4425 0.0005 34 1 1.6767 1.9564 -0.8899 35 1 1.6768 1.9563 0.8900 36 1 3.2097 -2.3750 0.4294 37 1 3.8478 -1.5019 5.7603 38 1 2.2325 -2.0516 5.2190 39 1 2.1796 -3.8444 6.8279 40 1 3.0375 -2.5678 7.7548 41 1 4.1980 -5.3022 5.0786 42 1 5.6450 -4.2553 5.1129 43 1 3.9239 -5.1490 8.6373 44 1 3.3203 -5.9100 7.1462 45 1 5.2722 -7.1467 8.0462 46 1 5.6522 -6.4211 6.4649 47 1 6.3941 -5.2984 9.2063 48 1 7.5113 -5.9998 8.0081 49 1 7.7185 -0.5540 7.4858 50 1 5.7277 -2.3986 6.7977 51 1 5.2612 -2.9281 8.4343 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001040318300.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:08:09 Heat of formation + Delta-G solvation = 44.199254 kcal Electronic energy + Delta-G solvation = -32090.122265 eV Core-core repulsion = 27993.192108 eV Total energy + Delta-G solvation = -4096.930157 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -45.13574 -40.08998 -38.28436 -36.41263 -35.73764 -33.98883 -33.13019 -31.56952 -30.74997 -30.01033 -28.73897 -27.57462 -26.47327 -25.35701 -24.24622 -23.28455 -23.05451 -22.13326 -21.60902 -20.44438 -18.77859 -18.11606 -17.82671 -17.26485 -16.77642 -16.71478 -15.65976 -15.35255 -15.24114 -14.81491 -14.42540 -14.07181 -13.91655 -13.73238 -13.69228 -13.62583 -13.17991 -13.04315 -12.65654 -12.59659 -12.46750 -12.33250 -12.16595 -11.84849 -11.74529 -11.68000 -11.61537 -11.31715 -11.17108 -10.95866 -10.84527 -10.58203 -10.45440 -10.39550 -10.26702 -10.16165 -9.99834 -9.82850 -9.57987 -9.47212 -9.39879 -8.46337 -8.31805 -6.68485 -5.79512 -3.20436 1.12536 1.62452 2.79078 3.05498 3.34016 3.39763 3.45025 3.48829 3.95671 4.16311 4.49272 4.50416 4.64428 4.76246 4.92351 4.94675 5.01498 5.14639 5.23106 5.23220 5.27262 5.41643 5.43349 5.48444 5.52579 5.56836 5.62866 5.68774 5.75475 5.78172 5.81832 5.86259 5.88831 6.01246 6.10987 6.18182 6.21783 6.33108 6.40664 6.46617 6.50691 6.65474 6.73874 6.83044 6.88121 6.99858 7.28279 7.60262 7.70172 7.80213 7.94900 8.28412 8.43792 9.20666 9.84398 10.40544 11.29077 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012062 B = 0.003338 C = 0.002902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2320.709618 B = 8386.673090 C = 9644.878262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.011 4.011 3 C -0.152 4.152 4 C -0.031 4.031 5 C -0.181 4.181 6 C -0.013 4.013 7 C 0.604 3.396 8 O -0.530 6.530 9 N -0.594 5.594 10 C 0.100 3.900 11 C -0.123 4.123 12 C -0.092 4.092 13 C 0.128 3.872 14 C -0.092 4.092 15 C -0.138 4.138 16 C 0.144 3.856 17 N -0.590 5.590 18 C -0.251 4.251 19 H 0.065 0.935 20 C 0.005 3.995 21 N -0.902 5.902 22 Si 0.897 3.103 23 H -0.283 1.283 24 H -0.290 1.290 25 H -0.282 1.282 26 C 0.187 3.813 27 N -0.327 5.327 28 O 0.120 5.880 29 H 0.068 0.932 30 H 0.060 0.940 31 H 0.064 0.936 32 H 0.104 0.896 33 H 0.062 0.938 34 H 0.069 0.931 35 H 0.065 0.935 36 H 0.179 0.821 37 H 0.075 0.925 38 H 0.082 0.918 39 H 0.068 0.932 40 H 0.085 0.915 41 H 0.058 0.942 42 H 0.090 0.910 43 H 0.060 0.940 44 H 0.048 0.952 45 H 0.051 0.949 46 H 0.059 0.941 47 H 0.018 0.982 48 H 0.053 0.947 49 H 0.253 0.747 50 H 0.090 0.910 51 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.376 2.223 -11.005 19.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.030 4.030 3 C -0.209 4.209 4 C -0.095 4.095 5 C -0.204 4.204 6 C -0.173 4.173 7 C 0.390 3.610 8 O -0.406 6.406 9 N -0.326 5.326 10 C -0.023 4.023 11 C -0.161 4.161 12 C -0.095 4.095 13 C 0.007 3.993 14 C -0.130 4.130 15 C -0.177 4.177 16 C 0.018 3.982 17 N -0.313 5.313 18 C -0.381 4.381 19 H 0.083 0.917 20 C -0.194 4.194 21 N -0.547 5.547 22 Si 0.726 3.274 23 H -0.210 1.210 24 H -0.216 1.216 25 H -0.208 1.208 26 C 0.061 3.939 27 N -0.028 5.028 28 O 0.046 5.954 29 H 0.087 0.913 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.122 0.878 33 H 0.081 0.919 34 H 0.088 0.912 35 H 0.084 0.916 36 H 0.196 0.804 37 H 0.094 0.906 38 H 0.100 0.900 39 H 0.086 0.914 40 H 0.104 0.896 41 H 0.077 0.923 42 H 0.108 0.892 43 H 0.079 0.921 44 H 0.066 0.934 45 H 0.070 0.930 46 H 0.077 0.923 47 H 0.036 0.964 48 H 0.071 0.929 49 H 0.063 0.937 50 H 0.108 0.892 51 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -16.167 2.196 -10.108 19.193 hybrid contribution 1.008 0.071 -1.217 1.582 sum -15.159 2.267 -11.325 19.058 Atomic orbital electron populations 1.21897 0.93089 1.02765 1.03045 1.19798 0.96726 0.96180 0.90294 1.21904 1.01877 0.94104 1.03044 1.24442 1.00549 0.97146 0.87327 1.22417 1.02607 0.98759 0.96581 1.23504 1.02588 0.98461 0.92702 1.16447 0.80539 0.83010 0.81025 1.90785 1.46660 1.42245 1.60957 1.48397 1.50171 1.29931 1.04110 1.22556 0.98137 0.93161 0.88408 1.22770 0.97727 0.98536 0.97076 1.21866 0.97077 0.96858 0.93672 1.22070 0.97804 0.89000 0.90413 1.21263 0.97181 0.94807 0.99742 1.22083 0.96696 0.97601 1.01351 1.20911 0.95509 0.87717 0.94070 1.44051 1.07259 1.14999 1.64963 1.19122 0.95484 0.90820 1.32628 0.91692 1.24973 0.98439 0.96879 0.99065 1.70007 1.43352 1.01453 1.39838 0.86453 0.81998 0.77491 0.81433 1.20992 1.21618 1.20785 1.20686 0.82564 0.92642 0.97991 1.74293 1.09655 1.02585 1.16289 1.84765 1.54723 1.42457 1.13499 0.91260 0.92049 0.91666 0.87791 0.91919 0.91250 0.91632 0.80385 0.90636 0.90018 0.91375 0.89604 0.92344 0.89196 0.92085 0.93358 0.92998 0.92255 0.96443 0.92861 0.93654 0.89157 0.95976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 9.18 37.16 0.34 -0.51 16 2 C -0.01 -0.07 3.34 -91.77 -0.31 -0.38 16 3 C -0.15 -0.95 9.17 37.15 0.34 -0.61 16 4 C -0.03 -0.34 5.98 -35.35 -0.21 -0.55 16 5 C -0.18 -2.35 10.91 -39.08 -0.43 -2.78 16 6 C -0.01 -0.22 7.02 -82.53 -0.58 -0.80 16 7 C 0.60 11.75 7.88 -12.11 -0.10 11.65 16 8 O -0.53 -11.61 17.28 5.37 0.09 -11.52 16 9 N -0.59 -11.27 3.33 -171.60 -0.57 -11.85 16 10 C 0.10 1.68 5.88 -2.43 -0.01 1.66 16 11 C -0.12 -1.91 5.99 -24.88 -0.15 -2.06 16 12 C -0.09 -1.69 0.54 -154.09 -0.08 -1.77 16 13 C 0.13 2.53 5.05 -3.33 -0.02 2.51 16 14 C -0.09 -1.50 4.52 -27.03 -0.12 -1.62 16 15 C -0.14 -2.37 5.92 -26.55 -0.16 -2.53 16 16 C 0.14 2.98 6.49 -3.71 -0.02 2.96 16 17 N -0.59 -14.49 2.62 -172.68 -0.45 -14.94 16 18 C -0.25 -6.88 9.60 -15.06 -0.14 -7.02 16 19 H 0.07 1.77 7.89 -52.48 -0.41 1.35 16 20 C 0.01 0.14 4.92 -17.43 -0.09 0.05 16 21 N -0.90 -25.97 11.17 55.49 0.62 -25.35 16 22 Si 0.90 22.31 29.59 -169.99 -5.03 17.28 16 23 H -0.28 -7.17 7.11 56.52 0.40 -6.77 16 24 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 25 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 26 C 0.19 4.29 3.73 -4.04 -0.02 4.27 16 27 N -0.33 -4.97 9.30 33.29 0.31 -4.66 16 28 O 0.12 1.52 11.18 17.24 0.19 1.72 16 29 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.10 0.55 8.12 -51.93 -0.42 0.13 16 33 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 36 H 0.18 2.01 8.06 -52.48 -0.42 1.58 16 37 H 0.08 1.39 7.91 -51.93 -0.41 0.98 16 38 H 0.08 1.26 6.24 -51.93 -0.32 0.93 16 39 H 0.07 0.94 8.02 -51.93 -0.42 0.52 16 40 H 0.09 1.27 7.98 -51.93 -0.41 0.86 16 41 H 0.06 1.10 7.61 -51.93 -0.40 0.71 16 42 H 0.09 2.12 7.55 -51.93 -0.39 1.73 16 43 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 44 H 0.05 0.71 8.11 -51.93 -0.42 0.28 16 45 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 46 H 0.06 1.07 7.28 -51.93 -0.38 0.69 16 47 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 48 H 0.05 1.09 7.93 -51.92 -0.41 0.68 16 49 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 50 H 0.09 2.37 5.64 -51.93 -0.29 2.07 16 51 H 0.02 0.54 8.11 -51.93 -0.42 0.12 16 LS Contribution 399.93 15.07 6.03 6.03 Total: -1.00 -31.90 399.93 -9.04 -40.93 By element: Atomic # 1 Polarization: 8.33 SS G_CDS: -8.48 Total: -0.14 kcal Atomic # 6 Polarization: 4.25 SS G_CDS: -1.75 Total: 2.51 kcal Atomic # 7 Polarization: -56.71 SS G_CDS: -0.09 Total: -56.80 kcal Atomic # 8 Polarization: -10.08 SS G_CDS: 0.29 Total: -9.80 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.03 Total: 17.28 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -31.90 -9.04 -40.93 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040318300.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.134 kcal (2) G-P(sol) polarization free energy of solvation -31.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.934 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds