Wall clock time and date at job start Wed Apr 1 2020 05:08:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52994 * 109.47285 * 2 1 4 4 C 1.50699 * 109.47339 * 120.00342 * 2 1 3 5 5 C 1.35313 * 126.67157 * 119.99393 * 4 2 1 6 6 C 1.42270 * 103.92443 * 180.02562 * 5 4 2 7 7 C 1.48334 * 126.93595 * 180.02562 * 6 5 4 8 8 O 1.21500 * 119.99813 * 359.97438 * 7 6 5 9 9 N 1.34772 * 120.00000 * 179.97438 * 7 6 5 10 10 C 1.47490 * 125.66011 * 359.68912 * 9 7 6 11 11 C 1.55030 * 104.90380 * 156.25374 * 10 9 7 12 12 C 1.54477 * 101.53109 * 36.34299 * 11 10 9 13 13 C 1.47177 * 125.66379 * 179.97438 * 9 7 6 14 14 C 1.52243 * 110.29560 * 206.65689 * 12 11 10 15 15 C 1.53163 * 109.65291 * 178.00027 * 14 12 11 16 16 C 1.53193 * 109.26937 * 60.18153 * 15 14 12 17 17 N 1.46923 * 108.92811 * 304.77705 * 16 15 14 18 18 C 1.36941 * 120.70355 * 234.13423 * 17 16 15 19 19 H 1.08007 * 119.99574 * 27.25400 * 18 17 16 20 20 C 1.38802 * 120.00460 * 207.24987 * 18 17 16 21 21 N 1.31625 * 120.00227 * 17.20527 * 20 18 17 22 22 Si 1.86803 * 120.00098 * 197.20250 * 20 18 17 23 23 H 1.48494 * 109.47063 * 60.00482 * 22 20 18 24 24 H 1.48502 * 109.46818 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.47372 * 299.99992 * 22 20 18 26 26 C 1.47077 * 118.60018 * 54.15612 * 17 16 15 27 27 N 1.30978 * 106.12220 * 0.25957 * 6 5 4 28 28 O 1.20904 * 111.44046 * 359.54054 * 27 6 5 29 29 H 1.08994 * 109.46755 * 59.99426 * 1 2 3 30 30 H 1.09000 * 109.47038 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46686 * 299.99898 * 1 2 3 32 32 H 1.09000 * 109.46686 * 240.00102 * 2 1 3 33 33 H 1.09003 * 109.47432 * 179.97438 * 3 2 1 34 34 H 1.09001 * 109.47415 * 300.00613 * 3 2 1 35 35 H 1.09000 * 109.47175 * 60.00401 * 3 2 1 36 36 H 1.08004 * 128.03396 * 0.02562 * 5 4 2 37 37 H 1.08992 * 110.35665 * 275.11093 * 10 9 7 38 38 H 1.09002 * 110.35232 * 37.39766 * 10 9 7 39 39 H 1.09004 * 111.01372 * 278.28060 * 11 10 9 40 40 H 1.08999 * 111.01347 * 154.40658 * 11 10 9 41 41 H 1.09005 * 109.91354 * 300.63380 * 13 9 7 42 42 H 1.09000 * 109.91297 * 61.90021 * 13 9 7 43 43 H 1.08997 * 109.44071 * 298.06085 * 14 12 11 44 44 H 1.09005 * 109.43838 * 57.98150 * 14 12 11 45 45 H 1.08999 * 109.50474 * 180.11716 * 15 14 12 46 46 H 1.09004 * 109.50409 * 300.24580 * 15 14 12 47 47 H 1.08997 * 109.55983 * 64.61407 * 16 15 14 48 48 H 1.09007 * 109.55888 * 184.94413 * 16 15 14 49 49 H 0.96997 * 120.00227 * 180.02562 * 21 20 18 50 50 H 1.09004 * 109.57735 * 187.74618 * 26 17 16 51 51 H 1.08998 * 109.58112 * 67.35799 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0324 -0.7105 1.2304 5 6 2.8134 -1.8150 1.2635 6 6 2.9910 -2.0672 2.6524 7 6 3.7710 -3.1699 3.2655 8 8 4.3416 -3.9765 2.5585 9 7 3.8466 -3.2770 4.6068 10 6 3.2114 -2.3680 5.5792 11 6 3.0638 -3.2086 6.8734 12 6 4.3563 -4.0541 6.8416 13 6 4.5816 -4.3171 5.3445 14 6 4.1502 -5.3622 7.5927 15 6 5.4231 -6.2100 7.5095 16 6 6.5860 -5.4395 8.1426 17 7 6.7038 -4.1304 7.4861 18 6 7.8927 -3.7269 6.9392 19 1 8.6009 -4.4614 6.5849 20 6 8.1875 -2.3742 6.8400 21 7 7.5127 -1.4993 7.5553 22 14 9.5422 -1.7953 5.6915 23 1 9.2146 -2.1939 4.2991 24 1 9.6588 -0.3169 5.7692 25 1 10.8306 -2.4147 6.0936 26 6 5.5181 -3.2621 7.4290 27 7 2.3225 -1.1320 3.2802 28 8 1.7921 -0.3714 2.5045 29 1 -0.3632 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 3.1301 1.4425 0.0005 34 1 1.6767 1.9564 -0.8899 35 1 1.6768 1.9563 0.8900 36 1 3.2097 -2.3750 0.4294 37 1 3.8478 -1.5019 5.7603 38 1 2.2325 -2.0516 5.2190 39 1 2.1796 -3.8444 6.8279 40 1 3.0375 -2.5678 7.7548 41 1 4.1980 -5.3022 5.0786 42 1 5.6450 -4.2553 5.1129 43 1 3.9239 -5.1490 8.6373 44 1 3.3203 -5.9100 7.1462 45 1 5.2722 -7.1467 8.0462 46 1 5.6522 -6.4211 6.4649 47 1 6.3941 -5.2984 9.2063 48 1 7.5113 -5.9998 8.0081 49 1 7.7185 -0.5540 7.4858 50 1 5.7277 -2.3986 6.7977 51 1 5.2612 -2.9281 8.4343 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001040318300.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:08:08 Heat of formation + Delta-G solvation = 26.430872 kcal Electronic energy + Delta-G solvation = -32090.892760 eV Core-core repulsion = 27993.192108 eV Total energy + Delta-G solvation = -4097.700651 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -46.24781 -41.60775 -39.85202 -37.42112 -37.02091 -35.25563 -34.86145 -33.11437 -31.86476 -31.72757 -30.22599 -28.02500 -28.01806 -27.27723 -25.54819 -24.46153 -24.21188 -23.79769 -22.69429 -22.01055 -20.04124 -19.73975 -18.95131 -18.67733 -18.32987 -17.96005 -17.18232 -16.78084 -16.69555 -16.06779 -15.83465 -15.54276 -15.38361 -15.18041 -14.84661 -14.60444 -14.54201 -14.26940 -14.12598 -14.01193 -13.92795 -13.56879 -13.22007 -13.03598 -13.01170 -12.87392 -12.81801 -12.69115 -12.44283 -12.31894 -12.17744 -12.15743 -11.93268 -11.85594 -11.79710 -11.62672 -11.55956 -11.47032 -11.07667 -11.02164 -10.56428 -10.52654 -9.87534 -8.69576 -7.92194 -5.33885 -0.04279 0.58097 1.35775 1.39668 1.44688 1.57946 1.90032 1.98207 2.44107 2.71547 3.19852 3.25342 3.47288 3.59800 3.78440 3.80072 3.83110 3.95071 3.99901 4.14551 4.19256 4.25552 4.29931 4.32994 4.41985 4.50806 4.53810 4.62412 4.70050 4.80475 4.83571 4.85852 4.91804 4.94807 4.96759 4.99026 5.03359 5.08785 5.12416 5.14772 5.15084 5.29601 5.31168 5.38079 5.40407 5.44602 5.54625 5.62148 5.72514 6.22065 6.35410 6.67784 6.97796 7.11959 7.84731 8.34389 9.13183 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012062 B = 0.003338 C = 0.002902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2320.709618 B = 8386.673090 C = 9644.878262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.009 4.009 3 C -0.152 4.152 4 C -0.007 4.007 5 C -0.193 4.193 6 C -0.044 4.044 7 C 0.597 3.403 8 O -0.566 6.566 9 N -0.600 5.600 10 C 0.104 3.896 11 C -0.110 4.110 12 C -0.085 4.085 13 C 0.136 3.864 14 C -0.088 4.088 15 C -0.129 4.129 16 C 0.138 3.862 17 N -0.609 5.609 18 C -0.256 4.256 19 H 0.060 0.940 20 C -0.043 4.043 21 N -0.926 5.926 22 Si 0.948 3.052 23 H -0.293 1.293 24 H -0.290 1.290 25 H -0.270 1.270 26 C 0.199 3.801 27 N -0.340 5.340 28 O 0.132 5.868 29 H 0.092 0.908 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.126 0.874 33 H 0.051 0.949 34 H 0.093 0.907 35 H 0.059 0.941 36 H 0.192 0.808 37 H 0.050 0.950 38 H 0.099 0.901 39 H 0.101 0.899 40 H 0.095 0.905 41 H 0.070 0.930 42 H 0.042 0.958 43 H 0.074 0.926 44 H 0.079 0.921 45 H 0.087 0.913 46 H 0.046 0.954 47 H 0.021 0.979 48 H 0.048 0.952 49 H 0.248 0.752 50 H 0.050 0.950 51 H 0.005 0.995 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.943 1.974 -11.985 22.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.028 4.028 3 C -0.209 4.209 4 C -0.071 4.071 5 C -0.216 4.216 6 C -0.201 4.201 7 C 0.385 3.615 8 O -0.445 6.445 9 N -0.331 5.331 10 C -0.018 4.018 11 C -0.149 4.149 12 C -0.087 4.087 13 C 0.014 3.986 14 C -0.126 4.126 15 C -0.167 4.167 16 C 0.013 3.987 17 N -0.332 5.332 18 C -0.387 4.387 19 H 0.077 0.923 20 C -0.239 4.239 21 N -0.572 5.572 22 Si 0.777 3.223 23 H -0.220 1.220 24 H -0.216 1.216 25 H -0.196 1.196 26 C 0.074 3.926 27 N -0.039 5.039 28 O 0.054 5.946 29 H 0.111 0.889 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.144 0.856 33 H 0.070 0.930 34 H 0.112 0.888 35 H 0.078 0.922 36 H 0.209 0.791 37 H 0.068 0.932 38 H 0.117 0.883 39 H 0.119 0.881 40 H 0.114 0.886 41 H 0.088 0.912 42 H 0.060 0.940 43 H 0.092 0.908 44 H 0.098 0.902 45 H 0.106 0.894 46 H 0.065 0.935 47 H 0.039 0.961 48 H 0.066 0.934 49 H 0.057 0.943 50 H 0.069 0.931 51 H 0.023 0.977 Dipole moment (debyes) X Y Z Total from point charges -18.738 1.920 -11.048 21.837 hybrid contribution 1.805 0.184 -0.963 2.054 sum -16.933 2.104 -12.011 20.867 Atomic orbital electron populations 1.21909 0.91773 1.02923 1.04004 1.20104 0.97693 0.96290 0.88752 1.21928 1.01240 0.93731 1.04034 1.25156 0.98554 0.95998 0.87370 1.22641 1.03543 0.99908 0.95512 1.23302 1.03974 0.98595 0.94238 1.16927 0.80265 0.83371 0.80975 1.90740 1.48233 1.43782 1.61702 1.48550 1.50024 1.30047 1.04495 1.22574 0.98101 0.92315 0.88802 1.22795 0.97240 0.98306 0.96528 1.21676 0.96451 0.98131 0.92480 1.21866 0.95222 0.89925 0.91544 1.21284 0.97630 0.93305 1.00343 1.21972 0.95461 0.98656 1.00652 1.21092 0.97153 0.86223 0.94215 1.44301 1.06939 1.16460 1.65483 1.19360 0.96355 0.90898 1.32038 0.92254 1.25559 1.00654 0.97139 1.00564 1.70131 1.44746 1.01146 1.41195 0.85623 0.80478 0.76935 0.79227 1.21996 1.21611 1.19568 1.20410 0.83829 0.92088 0.96314 1.74261 1.09897 1.02615 1.17144 1.84732 1.53806 1.41608 1.14454 0.88939 0.92300 0.92150 0.85635 0.92965 0.88786 0.92206 0.79105 0.93154 0.88263 0.88066 0.88637 0.91211 0.93996 0.90778 0.90220 0.89423 0.93481 0.96143 0.93377 0.94268 0.93121 0.97728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.18 71.98 0.66 -0.56 16 2 C -0.01 -0.10 3.34 -11.54 -0.04 -0.14 16 3 C -0.15 -1.51 9.17 71.98 0.66 -0.85 16 4 C -0.01 -0.15 5.98 25.01 0.15 0.00 16 5 C -0.19 -4.90 10.91 22.60 0.25 -4.65 16 6 C -0.04 -1.45 7.02 42.96 0.30 -1.15 16 7 C 0.60 23.97 7.88 86.93 0.68 24.65 16 8 O -0.57 -25.73 17.28 -3.72 -0.06 -25.80 16 9 N -0.60 -23.30 3.33 -815.14 -2.72 -26.02 16 10 C 0.10 3.51 5.88 86.88 0.51 4.02 16 11 C -0.11 -3.25 5.99 31.79 0.19 -3.06 16 12 C -0.09 -3.07 0.54 -51.91 -0.03 -3.10 16 13 C 0.14 5.47 5.05 86.47 0.44 5.91 16 14 C -0.09 -2.62 4.52 30.40 0.14 -2.48 16 15 C -0.13 -4.15 5.92 30.71 0.18 -3.97 16 16 C 0.14 5.68 6.49 86.36 0.56 6.24 16 17 N -0.61 -30.71 2.62 -700.25 -1.84 -32.55 16 18 C -0.26 -14.54 9.60 84.03 0.81 -13.74 16 19 H 0.06 3.35 7.89 -2.91 -0.02 3.33 16 20 C -0.04 -2.51 4.92 84.86 0.42 -2.09 16 21 N -0.93 -55.50 11.17 21.65 0.24 -55.26 16 22 Si 0.95 47.50 29.59 68.60 2.03 49.53 16 23 H -0.29 -14.97 7.11 99.48 0.71 -14.26 16 24 H -0.29 -14.41 7.11 99.48 0.71 -13.70 16 25 H -0.27 -12.91 7.11 99.48 0.71 -12.21 16 26 C 0.20 9.41 3.73 86.07 0.32 9.73 16 27 N -0.34 -10.27 9.30 -49.53 -0.46 -10.73 16 28 O 0.13 3.20 11.18 71.87 0.80 4.01 16 29 H 0.09 0.37 8.14 -2.39 -0.02 0.36 16 30 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.13 0.89 8.12 -2.39 -0.02 0.87 16 33 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 34 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 35 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 36 H 0.19 4.18 8.06 -2.91 -0.02 4.16 16 37 H 0.05 1.94 7.91 -2.39 -0.02 1.92 16 38 H 0.10 2.99 6.24 -2.39 -0.01 2.98 16 39 H 0.10 2.39 8.02 -2.39 -0.02 2.37 16 40 H 0.10 2.67 7.98 -2.39 -0.02 2.65 16 41 H 0.07 2.62 7.61 -2.38 -0.02 2.60 16 42 H 0.04 2.08 7.55 -2.39 -0.02 2.06 16 43 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 44 H 0.08 1.96 8.11 -2.38 -0.02 1.94 16 45 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 46 H 0.05 1.64 7.28 -2.38 -0.02 1.63 16 47 H 0.02 0.83 8.14 -2.39 -0.02 0.82 16 48 H 0.05 1.98 7.93 -2.38 -0.02 1.96 16 49 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16 50 H 0.05 2.79 5.64 -2.39 -0.01 2.78 16 51 H 0.00 0.23 8.11 -2.39 -0.02 0.22 16 Total: -1.00 -73.78 399.93 5.11 -68.67 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: 0.91 Total: 13.37 kcal Atomic # 6 Polarization: 8.58 SS G_CDS: 6.20 Total: 14.78 kcal Atomic # 7 Polarization: -119.78 SS G_CDS: -4.77 Total: -124.55 kcal Atomic # 8 Polarization: -22.53 SS G_CDS: 0.74 Total: -21.79 kcal Atomic # 14 Polarization: 47.50 SS G_CDS: 2.03 Total: 49.53 kcal Total: -73.78 5.11 -68.67 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040318300.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.096 kcal (2) G-P(sol) polarization free energy of solvation -73.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.666 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds