Wall clock time and date at job start Wed Apr 1 2020 05:14:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53003 * 109.46712 * 2 1 4 4 C 1.50700 * 109.47318 * 120.00004 * 2 1 3 5 5 O 1.34251 * 126.52299 * 300.24561 * 4 2 1 6 6 C 1.34049 * 108.22730 * 180.15973 * 5 4 2 7 7 N 1.29940 * 109.24052 * 359.62348 * 6 5 4 8 8 C 1.36066 * 108.47573 * 0.23198 * 7 6 5 9 9 C 1.47426 * 126.44762 * 179.97438 * 8 7 6 10 10 O 1.21612 * 119.99958 * 180.02562 * 9 8 7 11 11 N 1.34777 * 119.99756 * 0.02671 * 9 8 7 12 12 C 1.47479 * 125.66123 * 359.68979 * 11 9 8 13 13 C 1.55240 * 104.78800 * 155.93372 * 12 11 9 14 14 C 1.54516 * 101.44327 * 36.66230 * 13 12 11 15 15 C 1.47166 * 125.65723 * 179.97438 * 11 9 8 16 16 C 1.52270 * 110.20346 * 83.42307 * 14 13 12 17 17 C 1.53310 * 109.41730 * 182.19985 * 16 14 13 18 18 N 1.46930 * 108.71212 * 306.49296 * 17 16 14 19 19 C 1.36937 * 120.56314 * 234.21518 * 18 17 16 20 20 H 1.07995 * 119.99960 * 27.94323 * 19 18 17 21 21 C 1.38810 * 119.99367 * 207.94235 * 19 18 17 22 22 N 1.31611 * 120.00553 * 17.45124 * 21 19 18 23 23 Si 1.86805 * 119.99825 * 197.44395 * 21 19 18 24 24 H 1.48497 * 109.46938 * 90.00341 * 23 21 19 25 25 H 1.48500 * 109.47283 * 210.00448 * 23 21 19 26 26 H 1.48500 * 109.46955 * 330.00732 * 23 21 19 27 27 C 1.46932 * 118.87101 * 54.23279 * 18 17 16 28 28 C 1.52271 * 110.20620 * 206.61437 * 14 13 12 29 29 H 1.08994 * 109.47279 * 299.99350 * 1 2 3 30 30 H 1.08994 * 109.47363 * 60.00368 * 1 2 3 31 31 H 1.09004 * 109.46505 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47279 * 240.00649 * 2 1 3 33 33 H 1.08998 * 109.46644 * 180.02562 * 3 2 1 34 34 H 1.09001 * 109.47187 * 300.00211 * 3 2 1 35 35 H 1.08999 * 109.47033 * 59.99946 * 3 2 1 36 36 H 1.08001 * 125.38589 * 179.89243 * 6 5 4 37 37 H 1.09005 * 110.35233 * 274.87507 * 12 11 9 38 38 H 1.08998 * 110.35662 * 37.16653 * 12 11 9 39 39 H 1.09000 * 111.20013 * 278.56386 * 13 12 11 40 40 H 1.09008 * 110.91155 * 154.63229 * 13 12 11 41 41 H 1.09001 * 109.91129 * 300.83431 * 15 11 9 42 42 H 1.09004 * 109.91442 * 61.91086 * 15 11 9 43 43 H 1.08993 * 109.48158 * 302.18480 * 16 14 13 44 44 H 1.09002 * 109.47840 * 62.21690 * 16 14 13 45 45 H 1.09008 * 109.59812 * 186.72742 * 17 16 14 46 46 H 1.09003 * 109.59971 * 66.26298 * 17 16 14 47 47 H 0.97003 * 120.00915 * 179.97438 * 22 21 19 48 48 H 1.08996 * 109.59942 * 185.99378 * 27 18 17 49 49 H 1.08996 * 109.73131 * 65.59879 * 27 18 17 50 50 H 1.09002 * 109.48187 * 297.76937 * 28 14 13 51 51 H 1.08993 * 109.48779 * 57.79743 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 1.7864 -0.3705 2.5057 6 6 2.4135 -1.2479 3.3019 7 7 3.0328 -2.1243 2.5693 8 6 2.8180 -1.8212 1.2603 9 6 3.3387 -2.5575 0.0940 10 8 3.0723 -2.1808 -1.0312 11 7 4.1098 -3.6479 0.2748 12 6 4.5142 -4.2086 1.5776 13 6 4.8183 -5.7032 1.2885 14 6 5.4583 -5.6199 -0.1154 15 6 4.6929 -4.4733 -0.7950 16 6 6.9387 -5.2828 0.0007 17 6 7.5428 -5.1505 -1.4021 18 7 7.2384 -6.3698 -2.1634 19 6 8.2414 -7.0887 -2.7570 20 1 9.2378 -7.0708 -2.3408 21 6 7.9773 -7.8403 -3.8938 22 7 6.8902 -7.6082 -4.5984 23 14 9.1651 -9.1812 -4.4237 24 1 8.7778 -10.4655 -3.7868 25 1 9.1195 -9.3275 -5.9007 26 1 10.5423 -8.8164 -4.0046 27 6 5.8395 -6.8045 -2.2771 28 6 5.2465 -6.9263 -0.8684 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3632 -1.0277 -0.0005 32 1 1.8934 -0.5137 -0.8900 33 1 3.1299 1.4426 -0.0005 34 1 1.6766 1.9564 -0.8900 35 1 1.6766 1.9564 0.8900 36 1 2.4019 -1.2318 4.3817 37 1 5.4059 -3.7026 1.9478 38 1 3.7005 -4.1200 2.2975 39 1 3.9029 -6.2946 1.2664 40 1 5.5235 -6.1046 2.0164 41 1 3.9009 -4.8778 -1.4252 42 1 5.3756 -3.8732 -1.3966 43 1 7.0561 -4.3414 0.5373 44 1 7.4508 -6.0772 0.5436 45 1 8.6232 -5.0279 -1.3249 46 1 7.1098 -4.2868 -1.9068 47 1 6.7058 -8.1331 -5.3930 48 1 5.7968 -7.7723 -2.7767 49 1 5.2719 -6.0717 -2.8505 50 1 5.7412 -7.7378 -0.3347 51 1 4.1793 -7.1358 -0.9400 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001040907761.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:14:54 Heat of formation + Delta-G solvation = 7.967899 kcal Electronic energy + Delta-G solvation = -31862.312141 eV Core-core repulsion = 27763.810875 eV Total energy + Delta-G solvation = -4098.501266 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -43.69718 -40.22917 -38.41585 -36.14495 -35.60729 -34.98318 -33.00021 -31.09634 -30.08196 -29.90458 -29.07136 -27.50298 -26.89715 -25.00392 -23.66652 -23.50692 -22.72580 -22.09897 -20.88688 -20.61202 -19.73358 -18.13194 -17.58290 -17.04219 -16.64443 -16.38858 -15.87065 -15.59747 -15.07396 -14.89422 -14.77857 -14.07400 -14.03493 -13.90443 -13.74321 -13.47776 -13.21570 -12.97817 -12.80176 -12.55060 -12.53989 -12.24677 -12.10229 -11.94700 -11.61622 -11.58465 -11.52567 -11.33411 -11.31999 -11.12419 -10.94368 -10.71994 -10.67933 -10.34410 -10.18001 -10.13672 -9.89151 -9.78468 -9.48012 -9.30869 -9.19459 -8.43916 -8.40596 -6.62111 -5.74740 -3.17079 0.91665 1.86572 2.30653 3.03036 3.27916 3.40120 3.47062 3.48250 3.79495 4.23938 4.44384 4.52737 4.65813 4.75102 4.83386 4.93577 5.00962 5.15054 5.24201 5.29058 5.42038 5.43038 5.43851 5.47099 5.50752 5.55918 5.64633 5.73407 5.75633 5.81323 5.88528 5.95111 6.02591 6.04602 6.11832 6.15507 6.18457 6.25083 6.36409 6.43600 6.57001 6.64890 6.71433 6.79974 6.88328 7.02047 7.21762 7.40111 7.62486 7.70838 7.83339 8.18009 8.49096 9.25321 9.88942 10.45751 11.33387 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.021229 B = 0.002491 C = 0.002349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.607591 B =11239.133853 C =11917.632653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.031 4.031 3 C -0.146 4.146 4 C 0.052 3.948 5 O -0.198 6.198 6 C 0.167 3.833 7 N -0.458 5.458 8 C -0.067 4.067 9 C 0.610 3.390 10 O -0.538 6.538 11 N -0.597 5.597 12 C 0.105 3.895 13 C -0.130 4.130 14 C -0.055 4.055 15 C 0.119 3.881 16 C -0.118 4.118 17 C 0.143 3.857 18 N -0.590 5.590 19 C -0.251 4.251 20 H 0.065 0.935 21 C 0.002 3.998 22 N -0.902 5.902 23 Si 0.901 3.099 24 H -0.288 1.288 25 H -0.292 1.292 26 H -0.280 1.280 27 C 0.169 3.831 28 C -0.126 4.126 29 H 0.058 0.942 30 H 0.071 0.929 31 H 0.059 0.941 32 H 0.136 0.864 33 H 0.060 0.940 34 H 0.071 0.929 35 H 0.058 0.942 36 H 0.253 0.747 37 H 0.066 0.934 38 H 0.093 0.907 39 H 0.072 0.928 40 H 0.081 0.919 41 H 0.070 0.930 42 H 0.077 0.923 43 H 0.050 0.950 44 H 0.063 0.937 45 H 0.054 0.946 46 H 0.018 0.982 47 H 0.253 0.747 48 H 0.088 0.912 49 H 0.019 0.981 50 H 0.060 0.940 51 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.292 14.190 17.231 25.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.050 4.050 3 C -0.203 4.203 4 C -0.005 4.005 5 O -0.084 6.084 6 C -0.061 4.061 7 N -0.187 5.187 8 C -0.187 4.187 9 C 0.397 3.603 10 O -0.416 6.416 11 N -0.328 5.328 12 C -0.018 4.018 13 C -0.168 4.168 14 C -0.056 4.056 15 C -0.002 4.002 16 C -0.157 4.157 17 C 0.017 3.983 18 N -0.313 5.313 19 C -0.381 4.381 20 H 0.083 0.917 21 C -0.197 4.197 22 N -0.546 5.546 23 Si 0.731 3.269 24 H -0.215 1.215 25 H -0.218 1.218 26 H -0.205 1.205 27 C 0.043 3.957 28 C -0.165 4.165 29 H 0.077 0.923 30 H 0.090 0.910 31 H 0.079 0.921 32 H 0.154 0.846 33 H 0.079 0.921 34 H 0.090 0.910 35 H 0.077 0.923 36 H 0.269 0.731 37 H 0.084 0.916 38 H 0.111 0.889 39 H 0.090 0.910 40 H 0.099 0.901 41 H 0.089 0.911 42 H 0.095 0.905 43 H 0.069 0.931 44 H 0.081 0.919 45 H 0.072 0.928 46 H 0.036 0.964 47 H 0.063 0.937 48 H 0.106 0.894 49 H 0.037 0.963 50 H 0.079 0.921 51 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -12.152 13.873 16.682 24.868 hybrid contribution 0.265 -0.260 -0.148 0.399 sum -11.888 13.613 16.533 24.494 Atomic orbital electron populations 1.21847 0.93146 1.02632 1.02648 1.20356 0.96746 0.96457 0.91395 1.21848 1.01719 0.94075 1.02643 1.23775 0.97209 0.95476 0.84045 1.84343 1.58745 1.49082 1.16219 1.28065 0.93456 0.85720 0.98881 1.70858 1.21107 1.25328 1.01430 1.21458 1.06150 0.99111 0.91945 1.16315 0.78377 0.79432 0.86163 1.90747 1.59991 1.67449 1.23426 1.48355 1.48342 1.26514 1.09585 1.22581 1.00801 0.93179 0.85217 1.22974 1.01074 0.95126 0.97603 1.20974 0.95416 0.95306 0.93930 1.22190 0.97108 0.91639 0.89289 1.21908 0.93857 1.00062 0.99892 1.20965 0.97732 0.89731 0.89885 1.44036 1.03269 1.24217 1.59796 1.19191 0.91388 1.22452 1.05080 0.91725 1.25032 0.97840 1.01318 0.95481 1.70033 1.27484 1.40483 1.16598 0.86307 0.80702 0.82443 0.77415 1.21504 1.21826 1.20495 1.20825 0.83679 1.00916 0.90254 1.22106 0.99490 0.94679 1.00260 0.92330 0.91036 0.92150 0.84620 0.92113 0.91032 0.92332 0.73112 0.91616 0.88898 0.90977 0.90068 0.91131 0.90472 0.93150 0.91866 0.92792 0.96377 0.93656 0.89403 0.96284 0.92092 0.93116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.18 37.16 0.34 -0.86 16 2 C -0.03 -0.32 3.24 -91.77 -0.30 -0.62 16 3 C -0.15 -1.22 9.18 37.16 0.34 -0.88 16 4 C 0.05 0.60 5.95 -35.08 -0.21 0.39 16 5 O -0.20 -1.89 10.73 6.53 0.07 -1.82 16 6 C 0.17 1.34 13.19 51.96 0.69 2.02 16 7 N -0.46 -5.29 8.44 -11.48 -0.10 -5.39 16 8 C -0.07 -0.91 6.82 -83.02 -0.57 -1.48 16 9 C 0.61 9.99 7.85 -12.52 -0.10 9.89 16 10 O -0.54 -9.96 14.79 5.27 0.08 -9.88 16 11 N -0.60 -9.48 3.33 -171.80 -0.57 -10.05 16 12 C 0.10 1.39 5.83 -2.32 -0.01 1.38 16 13 C -0.13 -1.73 6.00 -24.75 -0.15 -1.87 16 14 C -0.06 -0.91 0.53 -154.10 -0.08 -0.99 16 15 C 0.12 2.08 5.05 -3.32 -0.02 2.07 16 16 C -0.12 -2.02 4.78 -26.94 -0.13 -2.15 16 17 C 0.14 3.01 6.22 -3.65 -0.02 2.99 16 18 N -0.59 -14.71 2.98 -172.16 -0.51 -15.22 16 19 C -0.25 -6.90 9.58 -15.06 -0.14 -7.04 16 20 H 0.07 1.75 7.89 -52.49 -0.41 1.33 16 21 C 0.00 0.05 4.90 -17.43 -0.09 -0.03 16 22 N -0.90 -26.31 11.19 55.49 0.62 -25.69 16 23 Si 0.90 21.78 29.59 -169.99 -5.03 16.76 16 24 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 25 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 26 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 27 C 0.17 3.99 5.05 -3.64 -0.02 3.98 16 28 C -0.13 -2.35 4.70 -26.93 -0.13 -2.47 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.14 1.71 5.52 -51.93 -0.29 1.43 16 33 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 34 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 36 H 0.25 0.64 8.06 -52.49 -0.42 0.22 16 37 H 0.07 0.86 7.74 -51.93 -0.40 0.46 16 38 H 0.09 1.17 6.14 -51.93 -0.32 0.86 16 39 H 0.07 0.93 8.01 -51.93 -0.42 0.52 16 40 H 0.08 0.97 8.01 -51.92 -0.42 0.56 16 41 H 0.07 1.32 7.59 -51.93 -0.39 0.92 16 42 H 0.08 1.50 6.08 -51.93 -0.32 1.18 16 43 H 0.05 0.78 7.47 -51.93 -0.39 0.39 16 44 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 45 H 0.05 1.12 7.93 -51.92 -0.41 0.71 16 46 H 0.02 0.40 6.53 -51.93 -0.34 0.06 16 47 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 48 H 0.09 2.34 6.02 -51.93 -0.31 2.03 16 49 H 0.02 0.48 7.48 -51.93 -0.39 0.09 16 50 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 51 H 0.05 0.87 8.10 -51.93 -0.42 0.45 16 LS Contribution 392.43 15.07 5.91 5.91 Total: -1.00 -32.43 392.43 -8.28 -40.71 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: -8.16 Total: 0.34 kcal Atomic # 6 Polarization: 4.91 SS G_CDS: -0.59 Total: 4.33 kcal Atomic # 7 Polarization: -55.78 SS G_CDS: -0.56 Total: -56.35 kcal Atomic # 8 Polarization: -11.85 SS G_CDS: 0.15 Total: -11.70 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.03 Total: 16.76 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -32.43 -8.28 -40.71 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040907761.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.675 kcal (2) G-P(sol) polarization free energy of solvation -32.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.707 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds