Wall clock time and date at job start Wed Apr 1 2020 05:14:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53003 * 109.46712 * 2 1 4 4 C 1.50700 * 109.47318 * 120.00004 * 2 1 3 5 5 O 1.34251 * 126.52299 * 300.24561 * 4 2 1 6 6 C 1.34049 * 108.22730 * 180.15973 * 5 4 2 7 7 N 1.29940 * 109.24052 * 359.62348 * 6 5 4 8 8 C 1.36066 * 108.47573 * 0.23198 * 7 6 5 9 9 C 1.47426 * 126.44762 * 179.97438 * 8 7 6 10 10 O 1.21612 * 119.99958 * 180.02562 * 9 8 7 11 11 N 1.34777 * 119.99756 * 0.02671 * 9 8 7 12 12 C 1.47479 * 125.66123 * 359.68979 * 11 9 8 13 13 C 1.55240 * 104.78800 * 155.93372 * 12 11 9 14 14 C 1.54516 * 101.44327 * 36.66230 * 13 12 11 15 15 C 1.47166 * 125.65723 * 179.97438 * 11 9 8 16 16 C 1.52270 * 110.20346 * 83.42307 * 14 13 12 17 17 C 1.53310 * 109.41730 * 182.19985 * 16 14 13 18 18 N 1.46930 * 108.71212 * 306.49296 * 17 16 14 19 19 C 1.36937 * 120.56314 * 234.21518 * 18 17 16 20 20 H 1.07995 * 119.99960 * 27.94323 * 19 18 17 21 21 C 1.38810 * 119.99367 * 207.94235 * 19 18 17 22 22 N 1.31611 * 120.00553 * 17.45124 * 21 19 18 23 23 Si 1.86805 * 119.99825 * 197.44395 * 21 19 18 24 24 H 1.48497 * 109.46938 * 90.00341 * 23 21 19 25 25 H 1.48500 * 109.47283 * 210.00448 * 23 21 19 26 26 H 1.48500 * 109.46955 * 330.00732 * 23 21 19 27 27 C 1.46932 * 118.87101 * 54.23279 * 18 17 16 28 28 C 1.52271 * 110.20620 * 206.61437 * 14 13 12 29 29 H 1.08994 * 109.47279 * 299.99350 * 1 2 3 30 30 H 1.08994 * 109.47363 * 60.00368 * 1 2 3 31 31 H 1.09004 * 109.46505 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47279 * 240.00649 * 2 1 3 33 33 H 1.08998 * 109.46644 * 180.02562 * 3 2 1 34 34 H 1.09001 * 109.47187 * 300.00211 * 3 2 1 35 35 H 1.08999 * 109.47033 * 59.99946 * 3 2 1 36 36 H 1.08001 * 125.38589 * 179.89243 * 6 5 4 37 37 H 1.09005 * 110.35233 * 274.87507 * 12 11 9 38 38 H 1.08998 * 110.35662 * 37.16653 * 12 11 9 39 39 H 1.09000 * 111.20013 * 278.56386 * 13 12 11 40 40 H 1.09008 * 110.91155 * 154.63229 * 13 12 11 41 41 H 1.09001 * 109.91129 * 300.83431 * 15 11 9 42 42 H 1.09004 * 109.91442 * 61.91086 * 15 11 9 43 43 H 1.08993 * 109.48158 * 302.18480 * 16 14 13 44 44 H 1.09002 * 109.47840 * 62.21690 * 16 14 13 45 45 H 1.09008 * 109.59812 * 186.72742 * 17 16 14 46 46 H 1.09003 * 109.59971 * 66.26298 * 17 16 14 47 47 H 0.97003 * 120.00915 * 179.97438 * 22 21 19 48 48 H 1.08996 * 109.59942 * 185.99378 * 27 18 17 49 49 H 1.08996 * 109.73131 * 65.59879 * 27 18 17 50 50 H 1.09002 * 109.48187 * 297.76937 * 28 14 13 51 51 H 1.08993 * 109.48779 * 57.79743 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 1.7864 -0.3705 2.5057 6 6 2.4135 -1.2479 3.3019 7 7 3.0328 -2.1243 2.5693 8 6 2.8180 -1.8212 1.2603 9 6 3.3387 -2.5575 0.0940 10 8 3.0723 -2.1808 -1.0312 11 7 4.1098 -3.6479 0.2748 12 6 4.5142 -4.2086 1.5776 13 6 4.8183 -5.7032 1.2885 14 6 5.4583 -5.6199 -0.1154 15 6 4.6929 -4.4733 -0.7950 16 6 6.9387 -5.2828 0.0007 17 6 7.5428 -5.1505 -1.4021 18 7 7.2384 -6.3698 -2.1634 19 6 8.2414 -7.0887 -2.7570 20 1 9.2378 -7.0708 -2.3408 21 6 7.9773 -7.8403 -3.8938 22 7 6.8902 -7.6082 -4.5984 23 14 9.1651 -9.1812 -4.4237 24 1 8.7778 -10.4655 -3.7868 25 1 9.1195 -9.3275 -5.9007 26 1 10.5423 -8.8164 -4.0046 27 6 5.8395 -6.8045 -2.2771 28 6 5.2465 -6.9263 -0.8684 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3632 -1.0277 -0.0005 32 1 1.8934 -0.5137 -0.8900 33 1 3.1299 1.4426 -0.0005 34 1 1.6766 1.9564 -0.8900 35 1 1.6766 1.9564 0.8900 36 1 2.4019 -1.2318 4.3817 37 1 5.4059 -3.7026 1.9478 38 1 3.7005 -4.1200 2.2975 39 1 3.9029 -6.2946 1.2664 40 1 5.5235 -6.1046 2.0164 41 1 3.9009 -4.8778 -1.4252 42 1 5.3756 -3.8732 -1.3966 43 1 7.0561 -4.3414 0.5373 44 1 7.4508 -6.0772 0.5436 45 1 8.6232 -5.0279 -1.3249 46 1 7.1098 -4.2868 -1.9068 47 1 6.7058 -8.1331 -5.3930 48 1 5.7968 -7.7723 -2.7767 49 1 5.2719 -6.0717 -2.8505 50 1 5.7412 -7.7378 -0.3347 51 1 4.1793 -7.1358 -0.9400 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001040907761.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:14:53 Heat of formation + Delta-G solvation = -12.807150 kcal Electronic energy + Delta-G solvation = -31863.213015 eV Core-core repulsion = 27763.810875 eV Total energy + Delta-G solvation = -4099.402140 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -44.49065 -41.55353 -39.78699 -37.51510 -36.61955 -35.85329 -34.68541 -32.84095 -31.70321 -30.77667 -30.52384 -28.37804 -28.15612 -26.63983 -24.92055 -24.33032 -24.06888 -23.64881 -22.24812 -21.72441 -20.69280 -19.75520 -18.76655 -18.22874 -17.87203 -17.55718 -17.03838 -16.84568 -16.62548 -15.91757 -15.72796 -15.69337 -15.49978 -15.25532 -14.88548 -14.68429 -14.59291 -14.37883 -14.15439 -13.83143 -13.71689 -13.36900 -13.16950 -13.13510 -13.01770 -12.85278 -12.65925 -12.57924 -12.47713 -12.39441 -12.27919 -12.16337 -12.03204 -11.98255 -11.87795 -11.64052 -11.44744 -11.09726 -11.02690 -10.95549 -10.51345 -10.10334 -9.65483 -8.66535 -7.85955 -5.31937 0.01444 1.06007 1.47119 1.48163 1.50552 1.57298 1.91016 2.15965 2.51855 3.02587 3.26857 3.42225 3.48560 3.62461 3.70556 3.74642 3.80467 3.94710 4.03862 4.17047 4.24777 4.29183 4.38992 4.51447 4.53296 4.57220 4.62054 4.69131 4.69329 4.73783 4.79540 4.83229 4.85183 4.87236 4.94303 5.03038 5.04939 5.09892 5.13649 5.19961 5.22789 5.28585 5.29961 5.35636 5.38409 5.40762 5.53068 5.65594 5.77880 6.33557 6.39840 6.50974 6.95592 7.15558 7.87021 8.39193 9.19982 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.021229 B = 0.002491 C = 0.002349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.607591 B =11239.133853 C =11917.632653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.036 4.036 3 C -0.140 4.140 4 C 0.057 3.943 5 O -0.193 6.193 6 C 0.196 3.804 7 N -0.485 5.485 8 C -0.096 4.096 9 C 0.600 3.400 10 O -0.574 6.574 11 N -0.600 5.600 12 C 0.110 3.890 13 C -0.116 4.116 14 C -0.052 4.052 15 C 0.127 3.873 16 C -0.103 4.103 17 C 0.139 3.861 18 N -0.607 5.607 19 C -0.261 4.261 20 H 0.068 0.932 21 C -0.053 4.053 22 N -0.937 5.937 23 Si 0.968 3.032 24 H -0.283 1.283 25 H -0.298 1.298 26 H -0.268 1.268 27 C 0.177 3.823 28 C -0.111 4.111 29 H 0.073 0.927 30 H 0.084 0.916 31 H 0.047 0.953 32 H 0.106 0.894 33 H 0.046 0.954 34 H 0.084 0.916 35 H 0.073 0.927 36 H 0.308 0.692 37 H 0.074 0.926 38 H 0.106 0.894 39 H 0.080 0.920 40 H 0.107 0.893 41 H 0.048 0.952 42 H 0.048 0.952 43 H 0.073 0.927 44 H 0.073 0.927 45 H 0.054 0.946 46 H 0.003 0.997 47 H 0.249 0.751 48 H 0.053 0.947 49 H -0.012 1.012 50 H 0.067 0.933 51 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.627 14.850 21.251 28.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.055 4.055 3 C -0.197 4.197 4 C -0.001 4.001 5 O -0.079 6.079 6 C -0.032 4.032 7 N -0.213 5.213 8 C -0.214 4.214 9 C 0.390 3.610 10 O -0.455 6.455 11 N -0.331 5.331 12 C -0.011 4.011 13 C -0.153 4.153 14 C -0.053 4.053 15 C 0.004 3.996 16 C -0.142 4.142 17 C 0.013 3.987 18 N -0.331 5.331 19 C -0.391 4.391 20 H 0.086 0.914 21 C -0.248 4.248 22 N -0.583 5.583 23 Si 0.796 3.204 24 H -0.210 1.210 25 H -0.225 1.225 26 H -0.193 1.193 27 C 0.051 3.949 28 C -0.151 4.151 29 H 0.092 0.908 30 H 0.103 0.897 31 H 0.067 0.933 32 H 0.123 0.877 33 H 0.066 0.934 34 H 0.103 0.897 35 H 0.092 0.908 36 H 0.322 0.678 37 H 0.092 0.908 38 H 0.124 0.876 39 H 0.099 0.901 40 H 0.126 0.874 41 H 0.067 0.933 42 H 0.066 0.934 43 H 0.091 0.909 44 H 0.092 0.908 45 H 0.073 0.927 46 H 0.020 0.980 47 H 0.058 0.942 48 H 0.072 0.928 49 H 0.007 0.993 50 H 0.085 0.915 51 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -12.469 14.532 20.749 28.234 hybrid contribution 0.342 -0.349 -1.383 1.467 sum -12.127 14.183 19.366 26.893 Atomic orbital electron populations 1.21817 0.91482 1.02290 1.04057 1.20345 0.98093 0.97087 0.89978 1.21820 1.00841 0.92961 1.04065 1.23872 0.96311 0.94769 0.85130 1.84384 1.58843 1.49322 1.15349 1.29310 0.90215 0.83349 1.00327 1.70776 1.22983 1.27060 1.00470 1.21109 1.08041 1.00168 0.92084 1.16836 0.77960 0.79413 0.86807 1.90724 1.61204 1.68407 1.25169 1.48446 1.48210 1.26383 1.10051 1.22699 1.01547 0.92848 0.84020 1.22944 1.01688 0.95445 0.95260 1.20881 0.95244 0.93296 0.95856 1.21908 0.96014 0.91914 0.89727 1.21740 0.93758 1.01606 0.97068 1.21103 0.98059 0.87754 0.91740 1.44303 1.03193 1.25446 1.60123 1.19543 0.92090 1.22443 1.05013 0.91413 1.25822 0.99643 1.03573 0.95766 1.70207 1.29478 1.41567 1.17043 0.85254 0.79122 0.79617 0.76378 1.20999 1.22457 1.19261 1.20597 0.83439 0.97960 0.92858 1.21895 0.99879 0.96260 0.97040 0.90817 0.89704 0.93343 0.87659 0.93431 0.89696 0.90803 0.67774 0.90810 0.87613 0.90143 0.87419 0.93335 0.93368 0.90869 0.90837 0.92735 0.97951 0.94205 0.92824 0.99344 0.91452 0.91749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.16 9.18 71.98 0.66 -1.50 16 2 C -0.04 -0.74 3.24 -11.54 -0.04 -0.78 16 3 C -0.14 -2.20 9.18 71.98 0.66 -1.54 16 4 C 0.06 1.26 5.95 25.18 0.15 1.40 16 5 O -0.19 -3.09 10.73 0.44 0.00 -3.09 16 6 C 0.20 2.35 13.19 130.52 1.72 4.07 16 7 N -0.48 -9.92 8.44 -305.14 -2.57 -12.49 16 8 C -0.10 -2.55 6.82 40.41 0.28 -2.28 16 9 C 0.60 20.27 7.85 86.66 0.68 20.95 16 10 O -0.57 -22.75 14.79 -4.07 -0.06 -22.81 16 11 N -0.60 -19.12 3.33 -815.70 -2.72 -21.83 16 12 C 0.11 2.67 5.83 86.96 0.51 3.17 16 13 C -0.12 -2.72 6.00 31.88 0.19 -2.53 16 14 C -0.05 -1.66 0.53 -51.91 -0.03 -1.69 16 15 C 0.13 4.60 5.05 86.49 0.44 5.04 16 16 C -0.10 -3.38 4.78 30.46 0.15 -3.23 16 17 C 0.14 5.95 6.22 86.40 0.54 6.49 16 18 N -0.61 -31.16 2.98 -698.58 -2.08 -33.24 16 19 C -0.26 -14.58 9.58 84.03 0.80 -13.77 16 20 H 0.07 3.68 7.89 -2.91 -0.02 3.65 16 21 C -0.05 -3.01 4.90 84.86 0.42 -2.60 16 22 N -0.94 -57.07 11.19 21.65 0.24 -56.82 16 23 Si 0.97 45.63 29.59 68.60 2.03 47.66 16 24 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 25 H -0.30 -14.21 7.11 99.48 0.71 -13.51 16 26 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 27 C 0.18 8.78 5.05 86.41 0.44 9.21 16 28 C -0.11 -4.15 4.70 30.46 0.14 -4.01 16 29 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.05 0.85 8.14 -2.38 -0.02 0.83 16 32 H 0.11 2.85 5.52 -2.39 -0.01 2.83 16 33 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.31 -0.31 8.06 -2.91 -0.02 -0.34 16 37 H 0.07 1.70 7.74 -2.38 -0.02 1.68 16 38 H 0.11 2.36 6.14 -2.39 -0.01 2.35 16 39 H 0.08 1.82 8.01 -2.39 -0.02 1.80 16 40 H 0.11 2.06 8.01 -2.38 -0.02 2.04 16 41 H 0.05 1.94 7.59 -2.39 -0.02 1.92 16 42 H 0.05 2.01 6.08 -2.39 -0.01 1.99 16 43 H 0.07 2.10 7.47 -2.39 -0.02 2.08 16 44 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 45 H 0.05 2.28 7.93 -2.38 -0.02 2.26 16 46 H 0.00 0.12 6.53 -2.39 -0.02 0.11 16 47 H 0.25 14.70 8.31 -92.71 -0.77 13.93 16 48 H 0.05 3.01 6.02 -2.39 -0.01 2.99 16 49 H -0.01 -0.63 7.48 -2.39 -0.02 -0.64 16 50 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 51 H 0.06 2.21 8.10 -2.39 -0.02 2.19 16 Total: -1.00 -75.65 392.43 3.47 -72.18 By element: Atomic # 1 Polarization: 13.10 SS G_CDS: 0.93 Total: 14.03 kcal Atomic # 6 Polarization: 8.72 SS G_CDS: 7.70 Total: 16.42 kcal Atomic # 7 Polarization: -117.26 SS G_CDS: -7.13 Total: -124.39 kcal Atomic # 8 Polarization: -25.84 SS G_CDS: -0.06 Total: -25.89 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 2.03 Total: 47.66 kcal Total: -75.65 3.47 -72.18 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040907761.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.371 kcal (2) G-P(sol) polarization free energy of solvation -75.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds