Wall clock time and date at job start Wed Apr 1 2020 05:25:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47106 * 2 1 4 4 C 1.53001 * 109.46819 * 240.00228 * 2 1 3 5 5 C 1.50692 * 109.47304 * 120.00242 * 2 1 3 6 6 C 1.35310 * 126.66809 * 60.00045 * 5 2 1 7 7 C 1.42276 * 103.92527 * 179.97438 * 6 5 2 8 8 C 1.48329 * 126.94110 * 179.97438 * 7 6 5 9 9 O 1.21500 * 119.99813 * 0.03462 * 8 7 6 10 10 N 1.34770 * 120.00319 * 180.02562 * 8 7 6 11 11 C 1.47176 * 125.58996 * 0.03029 * 10 8 7 12 12 C 1.54659 * 107.34698 * 180.88105 * 11 10 8 13 13 C 1.53309 * 102.72164 * 20.51041 * 12 11 10 14 14 C 1.53304 * 112.22083 * 88.17387 * 13 12 11 15 15 C 1.54662 * 102.71550 * 155.00767 * 14 13 12 16 16 N 1.47163 * 107.34924 * 339.48621 * 15 14 13 17 17 C 1.36936 * 125.59170 * 179.12210 * 16 15 14 18 18 H 1.08004 * 119.99994 * 179.97438 * 17 16 15 19 19 C 1.38816 * 120.00045 * 359.97438 * 17 16 15 20 20 N 1.31618 * 119.99930 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99971 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47135 * 89.99677 * 21 19 17 23 23 H 1.48500 * 109.46777 * 210.00214 * 21 19 17 24 24 H 1.48498 * 109.46805 * 329.99644 * 21 19 17 25 25 C 1.47788 * 108.81761 * 359.10502 * 16 15 14 26 26 C 1.47787 * 125.59550 * 179.72074 * 10 8 7 27 27 N 1.30979 * 106.12156 * 0.02562 * 7 6 5 28 28 O 1.20913 * 111.43938 * 359.97438 * 27 7 6 29 29 H 1.08996 * 109.46847 * 299.99801 * 1 2 3 30 30 H 1.08996 * 109.47515 * 59.99567 * 1 2 3 31 31 H 1.09001 * 109.46965 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47238 * 180.02562 * 3 2 1 33 33 H 1.09008 * 109.46918 * 300.00023 * 3 2 1 34 34 H 1.08994 * 109.47461 * 59.99961 * 3 2 1 35 35 H 1.09001 * 109.47211 * 299.99677 * 4 2 1 36 36 H 1.09008 * 109.47543 * 59.99770 * 4 2 1 37 37 H 1.08997 * 109.47156 * 179.97438 * 4 2 1 38 38 H 1.08006 * 128.04144 * 359.95102 * 6 5 2 39 39 H 1.08995 * 109.86636 * 300.32096 * 11 10 8 40 40 H 1.08999 * 109.86810 * 61.30169 * 11 10 8 41 41 H 1.09004 * 110.76292 * 138.81377 * 12 11 10 42 42 H 1.08996 * 110.76497 * 262.01087 * 12 11 10 43 43 H 1.09002 * 110.75886 * 273.31017 * 14 13 12 44 44 H 1.08995 * 110.76538 * 36.50848 * 14 13 12 45 45 H 1.08997 * 109.87299 * 98.93599 * 15 14 13 46 46 H 1.09009 * 109.86512 * 219.91037 * 15 14 13 47 47 H 0.96999 * 119.99902 * 180.02562 * 20 19 17 48 48 H 1.08994 * 110.39930 * 263.37674 * 25 16 15 49 49 H 1.08993 * 110.40173 * 140.95336 * 25 16 15 50 50 H 1.09003 * 110.40179 * 276.64133 * 26 10 8 51 51 H 1.08994 * 110.40188 * 39.06074 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 2.0324 -0.7104 1.2304 6 6 1.7901 -1.9958 1.5768 7 6 2.4873 -2.1562 2.8066 8 6 2.5610 -3.3837 3.6360 9 8 1.9859 -4.3929 3.2798 10 7 3.2661 -3.3796 4.7846 11 6 4.0065 -2.2310 5.3310 12 6 4.6751 -2.6966 6.6456 13 6 4.6975 -4.2218 6.4912 14 6 5.9597 -4.7134 5.7734 15 6 6.1001 -6.1653 6.2876 16 7 5.3321 -6.2638 7.5391 17 6 5.1897 -7.3934 8.3000 18 1 4.6032 -7.3635 9.2064 19 6 5.7992 -8.5768 7.9063 20 7 6.5143 -8.6131 6.8020 21 14 5.6043 -10.1179 8.9439 22 1 4.4089 -10.8726 8.4896 23 1 6.8124 -10.9690 8.7976 24 1 5.4370 -9.7368 10.3694 25 6 4.7400 -4.9436 7.8402 26 6 3.4172 -4.5258 5.7052 27 7 3.0501 -1.0007 3.0590 28 8 2.8060 -0.1919 2.1940 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9563 -0.8901 34 1 1.6767 1.9564 0.8899 35 1 1.6766 -1.7489 -1.2493 36 1 1.6766 -0.2074 -2.1394 37 1 3.1299 -0.7209 -1.2496 38 1 1.2035 -2.7295 1.0438 39 1 4.7687 -1.9101 4.6211 40 1 3.3192 -1.4095 5.5332 41 1 5.6879 -2.3015 6.7250 42 1 4.0781 -2.4014 7.5084 43 1 5.8201 -4.6982 4.6925 44 1 6.8244 -4.1142 6.0583 45 1 5.6979 -6.8600 5.5503 46 1 7.1497 -6.3917 6.4759 47 1 6.9399 -9.4401 6.5267 48 1 5.3679 -4.3972 8.5438 49 1 3.7329 -5.0612 8.2401 50 1 2.5615 -4.5886 6.3775 51 1 3.5286 -5.4528 5.1428 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001041465233.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:25:28 Heat of formation + Delta-G solvation = 51.383186 kcal Electronic energy + Delta-G solvation = -31219.484197 eV Core-core repulsion = 27122.865559 eV Total energy + Delta-G solvation = -4096.618638 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -45.28229 -40.24719 -38.37395 -37.78054 -35.70619 -34.12321 -32.66053 -31.20088 -30.55450 -29.09722 -28.44537 -27.87503 -27.79178 -26.23660 -24.61511 -23.45817 -23.39028 -22.39142 -21.20843 -20.23634 -18.99067 -18.63104 -17.97765 -17.43426 -16.97248 -16.55973 -15.79762 -15.45197 -15.04753 -14.75284 -14.57255 -14.48433 -14.39923 -13.91657 -13.87004 -13.81511 -13.13546 -12.94923 -12.86538 -12.78781 -12.55864 -12.17715 -12.09017 -11.98493 -11.92707 -11.77032 -11.59457 -11.53438 -11.36389 -11.27765 -11.17692 -10.87106 -10.74433 -10.60098 -10.27228 -10.20093 -10.03339 -9.88704 -9.74807 -9.67511 -9.59906 -8.58384 -8.56331 -6.80994 -5.68111 -3.01826 0.97611 1.48784 2.60841 2.83746 3.14566 3.42739 3.47368 3.49320 3.78945 4.00006 4.34161 4.37539 4.50788 4.54388 4.69891 4.77681 4.83770 5.00343 5.03182 5.05845 5.11903 5.19665 5.27441 5.34376 5.36988 5.38125 5.41857 5.47769 5.54068 5.60706 5.66385 5.69724 5.76640 5.80424 5.85837 5.90457 5.96303 6.04688 6.11027 6.19811 6.29588 6.35314 6.52441 6.59394 6.73130 6.79342 7.46984 7.58530 7.64702 7.79047 7.85662 8.08501 8.27868 9.24438 9.84592 10.50396 11.43517 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.024599 B = 0.002178 C = 0.002105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.996992 B =12849.942456 C =13296.245307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.016 3.984 3 C -0.148 4.148 4 C -0.143 4.143 5 C -0.024 4.024 6 C -0.178 4.178 7 C -0.015 4.015 8 C 0.606 3.394 9 O -0.524 6.524 10 N -0.600 5.600 11 C 0.108 3.892 12 C -0.117 4.117 13 C -0.083 4.083 14 C -0.129 4.129 15 C 0.179 3.821 16 N -0.605 5.605 17 C -0.228 4.228 18 H 0.078 0.922 19 C -0.009 4.009 20 N -0.921 5.921 21 Si 0.912 3.088 22 H -0.289 1.289 23 H -0.291 1.291 24 H -0.282 1.282 25 C 0.152 3.848 26 C 0.132 3.868 27 N -0.329 5.329 28 O 0.121 5.879 29 H 0.062 0.938 30 H 0.071 0.929 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.068 0.932 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.071 0.929 37 H 0.062 0.938 38 H 0.178 0.822 39 H 0.071 0.929 40 H 0.068 0.932 41 H 0.084 0.916 42 H 0.077 0.923 43 H 0.058 0.942 44 H 0.061 0.939 45 H 0.046 0.954 46 H 0.043 0.957 47 H 0.252 0.748 48 H 0.026 0.974 49 H 0.041 0.959 50 H 0.072 0.928 51 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.371 22.949 -14.499 28.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.015 3.985 3 C -0.205 4.205 4 C -0.200 4.200 5 C -0.088 4.088 6 C -0.201 4.201 7 C -0.174 4.174 8 C 0.391 3.609 9 O -0.399 6.399 10 N -0.334 5.334 11 C -0.015 4.015 12 C -0.155 4.155 13 C -0.085 4.085 14 C -0.168 4.168 15 C 0.054 3.946 16 N -0.332 5.332 17 C -0.356 4.356 18 H 0.096 0.904 19 C -0.205 4.205 20 N -0.569 5.569 21 Si 0.742 3.258 22 H -0.216 1.216 23 H -0.217 1.217 24 H -0.207 1.207 25 C 0.026 3.974 26 C 0.011 3.989 27 N -0.030 5.030 28 O 0.046 5.954 29 H 0.081 0.919 30 H 0.090 0.910 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.087 0.913 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.090 0.910 37 H 0.082 0.918 38 H 0.196 0.804 39 H 0.089 0.911 40 H 0.087 0.913 41 H 0.103 0.897 42 H 0.096 0.904 43 H 0.076 0.924 44 H 0.080 0.920 45 H 0.064 0.936 46 H 0.061 0.939 47 H 0.062 0.938 48 H 0.044 0.956 49 H 0.059 0.941 50 H 0.090 0.910 51 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -8.861 22.550 -13.710 27.838 hybrid contribution -0.447 -1.325 0.052 1.399 sum -9.308 21.225 -13.658 26.901 Atomic orbital electron populations 1.21954 0.92002 1.03076 1.02916 1.19192 0.96112 0.95329 0.87872 1.21911 1.01988 0.93657 1.02929 1.21960 1.01893 1.00726 0.95424 1.24417 0.96698 0.93615 0.94036 1.22341 1.04621 0.96805 0.96312 1.23469 1.01659 0.94369 0.97901 1.16465 0.79526 0.85274 0.79600 1.90822 1.45872 1.32388 1.70807 1.48530 1.48895 1.14944 1.21004 1.22171 0.95460 0.88062 0.95779 1.22445 1.01431 0.95549 0.96112 1.21644 0.95073 0.93765 0.98017 1.22661 0.95144 1.00108 0.98840 1.21220 0.96395 0.89148 0.87801 1.44592 1.58385 1.04973 1.25262 1.19042 1.26795 0.86414 1.03338 0.90430 1.24806 0.99970 0.97895 0.97821 1.69966 1.37219 1.26084 1.23640 0.86122 0.77084 0.83167 0.79405 1.21607 1.21730 1.20723 1.21209 0.96817 0.87387 0.92012 1.22102 0.97014 0.88868 0.90943 1.74285 1.18334 1.00405 1.10017 1.84782 1.50971 1.35380 1.24223 0.91906 0.90981 0.91709 0.91675 0.91313 0.91713 0.91687 0.90979 0.91846 0.80439 0.91110 0.91338 0.89745 0.90447 0.92352 0.92044 0.93627 0.93877 0.93778 0.95641 0.94085 0.91018 0.89340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.69 8.36 37.16 0.31 -0.38 16 2 C 0.02 0.09 0.94 -155.66 -0.15 -0.05 16 3 C -0.15 -0.71 8.07 37.16 0.30 -0.41 16 4 C -0.14 -0.73 8.36 37.16 0.31 -0.41 16 5 C -0.02 -0.22 5.76 -35.36 -0.20 -0.43 16 6 C -0.18 -2.00 10.40 -39.07 -0.41 -2.41 16 7 C -0.01 -0.21 7.03 -82.53 -0.58 -0.79 16 8 C 0.61 10.33 7.88 -12.11 -0.10 10.24 16 9 O -0.52 -10.49 17.24 5.37 0.09 -10.39 16 10 N -0.60 -9.75 3.34 -171.84 -0.57 -10.32 16 11 C 0.11 1.45 5.56 -2.80 -0.02 1.44 16 12 C -0.12 -1.56 5.97 -25.70 -0.15 -1.71 16 13 C -0.08 -1.43 0.62 -154.02 -0.10 -1.53 16 14 C -0.13 -2.45 5.92 -25.70 -0.15 -2.60 16 15 C 0.18 4.40 5.38 -2.81 -0.02 4.38 16 16 N -0.61 -15.42 3.41 -170.60 -0.58 -16.00 16 17 C -0.23 -6.37 10.28 -15.06 -0.15 -6.53 16 18 H 0.08 2.09 7.83 -52.48 -0.41 1.68 16 19 C -0.01 -0.25 5.49 -17.43 -0.10 -0.34 16 20 N -0.92 -27.52 10.30 55.49 0.57 -26.95 16 21 Si 0.91 22.46 29.55 -169.99 -5.02 17.43 16 22 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 23 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 24 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 25 C 0.15 3.07 6.28 -3.31 -0.02 3.05 16 26 C 0.13 2.36 5.87 -3.19 -0.02 2.34 16 27 N -0.33 -4.25 9.72 33.29 0.32 -3.92 16 28 O 0.12 1.31 10.65 17.25 0.18 1.49 16 29 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 30 H 0.07 0.24 8.14 -51.93 -0.42 -0.19 16 31 H 0.06 0.33 8.03 -51.93 -0.42 -0.09 16 32 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 33 H 0.07 0.23 8.14 -51.92 -0.42 -0.20 16 34 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 35 H 0.06 0.35 8.03 -51.93 -0.42 -0.07 16 36 H 0.07 0.25 8.14 -51.92 -0.42 -0.17 16 37 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 38 H 0.18 1.76 8.06 -52.48 -0.42 1.34 16 39 H 0.07 0.95 7.69 -51.93 -0.40 0.55 16 40 H 0.07 0.86 7.78 -51.93 -0.40 0.45 16 41 H 0.08 1.02 7.78 -51.93 -0.40 0.62 16 42 H 0.08 0.93 8.08 -51.93 -0.42 0.51 16 43 H 0.06 1.09 8.01 -51.93 -0.42 0.67 16 44 H 0.06 1.07 7.82 -51.93 -0.41 0.66 16 45 H 0.05 1.26 7.39 -51.93 -0.38 0.88 16 46 H 0.04 1.17 7.49 -51.92 -0.39 0.78 16 47 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 48 H 0.03 0.50 8.07 -51.93 -0.42 0.09 16 49 H 0.04 0.81 7.80 -51.93 -0.41 0.40 16 50 H 0.07 1.25 7.85 -51.93 -0.41 0.85 16 51 H 0.09 1.85 7.95 -51.93 -0.41 1.44 16 LS Contribution 404.65 15.07 6.10 6.10 Total: -1.00 -32.98 404.65 -8.77 -41.75 By element: Atomic # 1 Polarization: 5.60 SS G_CDS: -8.63 Total: -3.03 kcal Atomic # 6 Polarization: 5.08 SS G_CDS: -1.23 Total: 3.85 kcal Atomic # 7 Polarization: -56.94 SS G_CDS: -0.26 Total: -57.20 kcal Atomic # 8 Polarization: -9.18 SS G_CDS: 0.28 Total: -8.90 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.02 Total: 17.43 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -32.98 -8.77 -41.75 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041465233.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.137 kcal (2) G-P(sol) polarization free energy of solvation -32.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.753 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds