Wall clock time and date at job start Wed Apr 1 2020 05:25:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47106 * 2 1 4 4 C 1.53001 * 109.46819 * 240.00228 * 2 1 3 5 5 C 1.50692 * 109.47304 * 120.00242 * 2 1 3 6 6 C 1.35310 * 126.66809 * 60.00045 * 5 2 1 7 7 C 1.42276 * 103.92527 * 179.97438 * 6 5 2 8 8 C 1.48329 * 126.94110 * 179.97438 * 7 6 5 9 9 O 1.21500 * 119.99813 * 0.03462 * 8 7 6 10 10 N 1.34770 * 120.00319 * 180.02562 * 8 7 6 11 11 C 1.47176 * 125.58996 * 0.03029 * 10 8 7 12 12 C 1.54659 * 107.34698 * 180.88105 * 11 10 8 13 13 C 1.53309 * 102.72164 * 20.51041 * 12 11 10 14 14 C 1.53304 * 112.22083 * 88.17387 * 13 12 11 15 15 C 1.54662 * 102.71550 * 155.00767 * 14 13 12 16 16 N 1.47163 * 107.34924 * 339.48621 * 15 14 13 17 17 C 1.36936 * 125.59170 * 179.12210 * 16 15 14 18 18 H 1.08004 * 119.99994 * 179.97438 * 17 16 15 19 19 C 1.38816 * 120.00045 * 359.97438 * 17 16 15 20 20 N 1.31618 * 119.99930 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99971 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47135 * 89.99677 * 21 19 17 23 23 H 1.48500 * 109.46777 * 210.00214 * 21 19 17 24 24 H 1.48498 * 109.46805 * 329.99644 * 21 19 17 25 25 C 1.47788 * 108.81761 * 359.10502 * 16 15 14 26 26 C 1.47787 * 125.59550 * 179.72074 * 10 8 7 27 27 N 1.30979 * 106.12156 * 0.02562 * 7 6 5 28 28 O 1.20913 * 111.43938 * 359.97438 * 27 7 6 29 29 H 1.08996 * 109.46847 * 299.99801 * 1 2 3 30 30 H 1.08996 * 109.47515 * 59.99567 * 1 2 3 31 31 H 1.09001 * 109.46965 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47238 * 180.02562 * 3 2 1 33 33 H 1.09008 * 109.46918 * 300.00023 * 3 2 1 34 34 H 1.08994 * 109.47461 * 59.99961 * 3 2 1 35 35 H 1.09001 * 109.47211 * 299.99677 * 4 2 1 36 36 H 1.09008 * 109.47543 * 59.99770 * 4 2 1 37 37 H 1.08997 * 109.47156 * 179.97438 * 4 2 1 38 38 H 1.08006 * 128.04144 * 359.95102 * 6 5 2 39 39 H 1.08995 * 109.86636 * 300.32096 * 11 10 8 40 40 H 1.08999 * 109.86810 * 61.30169 * 11 10 8 41 41 H 1.09004 * 110.76292 * 138.81377 * 12 11 10 42 42 H 1.08996 * 110.76497 * 262.01087 * 12 11 10 43 43 H 1.09002 * 110.75886 * 273.31017 * 14 13 12 44 44 H 1.08995 * 110.76538 * 36.50848 * 14 13 12 45 45 H 1.08997 * 109.87299 * 98.93599 * 15 14 13 46 46 H 1.09009 * 109.86512 * 219.91037 * 15 14 13 47 47 H 0.96999 * 119.99902 * 180.02562 * 20 19 17 48 48 H 1.08994 * 110.39930 * 263.37674 * 25 16 15 49 49 H 1.08993 * 110.40173 * 140.95336 * 25 16 15 50 50 H 1.09003 * 110.40179 * 276.64133 * 26 10 8 51 51 H 1.08994 * 110.40188 * 39.06074 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 2.0324 -0.7104 1.2304 6 6 1.7901 -1.9958 1.5768 7 6 2.4873 -2.1562 2.8066 8 6 2.5610 -3.3837 3.6360 9 8 1.9859 -4.3929 3.2798 10 7 3.2661 -3.3796 4.7846 11 6 4.0065 -2.2310 5.3310 12 6 4.6751 -2.6966 6.6456 13 6 4.6975 -4.2218 6.4912 14 6 5.9597 -4.7134 5.7734 15 6 6.1001 -6.1653 6.2876 16 7 5.3321 -6.2638 7.5391 17 6 5.1897 -7.3934 8.3000 18 1 4.6032 -7.3635 9.2064 19 6 5.7992 -8.5768 7.9063 20 7 6.5143 -8.6131 6.8020 21 14 5.6043 -10.1179 8.9439 22 1 4.4089 -10.8726 8.4896 23 1 6.8124 -10.9690 8.7976 24 1 5.4370 -9.7368 10.3694 25 6 4.7400 -4.9436 7.8402 26 6 3.4172 -4.5258 5.7052 27 7 3.0501 -1.0007 3.0590 28 8 2.8060 -0.1919 2.1940 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9563 -0.8901 34 1 1.6767 1.9564 0.8899 35 1 1.6766 -1.7489 -1.2493 36 1 1.6766 -0.2074 -2.1394 37 1 3.1299 -0.7209 -1.2496 38 1 1.2035 -2.7295 1.0438 39 1 4.7687 -1.9101 4.6211 40 1 3.3192 -1.4095 5.5332 41 1 5.6879 -2.3015 6.7250 42 1 4.0781 -2.4014 7.5084 43 1 5.8201 -4.6982 4.6925 44 1 6.8244 -4.1142 6.0583 45 1 5.6979 -6.8600 5.5503 46 1 7.1497 -6.3917 6.4759 47 1 6.9399 -9.4401 6.5267 48 1 5.3679 -4.3972 8.5438 49 1 3.7329 -5.0612 8.2401 50 1 2.5615 -4.5886 6.3775 51 1 3.5286 -5.4528 5.1428 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001041465233.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:25:27 Heat of formation + Delta-G solvation = 32.179651 kcal Electronic energy + Delta-G solvation = -31220.316924 eV Core-core repulsion = 27122.865559 eV Total energy + Delta-G solvation = -4097.451366 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -46.22416 -41.62976 -39.85476 -38.28468 -37.33361 -35.18604 -34.44621 -32.39068 -31.85240 -30.78906 -29.94546 -28.37134 -28.16164 -27.72576 -26.32458 -24.75850 -24.28678 -23.60083 -22.19656 -22.03408 -20.40229 -19.79634 -18.92129 -18.82713 -18.30989 -17.76892 -17.10793 -16.78746 -16.72689 -16.07956 -15.77842 -15.56138 -15.24986 -15.04379 -14.95775 -14.64344 -14.62121 -14.43630 -13.99654 -13.89191 -13.50047 -13.30111 -13.20549 -13.09780 -13.01533 -12.84808 -12.75304 -12.60859 -12.55081 -12.51486 -12.23057 -12.04521 -12.00673 -11.88858 -11.78183 -11.68066 -11.62115 -11.49283 -11.46997 -11.29402 -10.71994 -10.48091 -9.90266 -8.90597 -7.85496 -5.20898 -0.03276 0.58883 1.43822 1.46393 1.52557 1.54708 1.90457 1.91521 2.48484 2.70845 3.21544 3.32757 3.41169 3.51645 3.62489 3.74196 3.80529 3.92585 3.93745 3.96710 4.15503 4.20858 4.23195 4.29565 4.38961 4.52510 4.55932 4.64563 4.72583 4.77298 4.79021 4.81909 4.85630 4.90509 4.91883 4.94592 4.98976 5.02140 5.02830 5.11285 5.11944 5.22872 5.28724 5.30742 5.39964 5.44794 5.44933 5.62350 5.74337 6.17696 6.19505 6.67400 6.97072 7.08703 7.76490 8.40937 9.25112 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.024599 B = 0.002178 C = 0.002105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.996992 B =12849.942456 C =13296.245307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.017 3.983 3 C -0.148 4.148 4 C -0.143 4.143 5 C -0.003 4.003 6 C -0.191 4.191 7 C -0.039 4.039 8 C 0.600 3.400 9 O -0.567 6.567 10 N -0.601 5.601 11 C 0.110 3.890 12 C -0.103 4.103 13 C -0.073 4.073 14 C -0.112 4.112 15 C 0.189 3.811 16 N -0.627 5.627 17 C -0.237 4.237 18 H 0.086 0.914 19 C -0.072 4.072 20 N -0.954 5.954 21 Si 0.978 3.022 22 H -0.289 1.289 23 H -0.296 1.296 24 H -0.265 1.265 25 C 0.149 3.851 26 C 0.135 3.865 27 N -0.334 5.334 28 O 0.133 5.867 29 H 0.059 0.941 30 H 0.094 0.906 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.089 0.911 34 H 0.062 0.938 35 H 0.058 0.942 36 H 0.094 0.906 37 H 0.056 0.944 38 H 0.184 0.816 39 H 0.076 0.924 40 H 0.085 0.915 41 H 0.108 0.892 42 H 0.100 0.900 43 H 0.057 0.943 44 H 0.087 0.913 45 H -0.001 1.001 46 H 0.008 0.992 47 H 0.245 0.755 48 H 0.046 0.954 49 H 0.047 0.953 50 H 0.075 0.925 51 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.144 26.435 -14.523 31.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.016 3.984 3 C -0.205 4.205 4 C -0.201 4.201 5 C -0.066 4.066 6 C -0.214 4.214 7 C -0.196 4.196 8 C 0.388 3.612 9 O -0.445 6.445 10 N -0.333 5.333 11 C -0.011 4.011 12 C -0.141 4.141 13 C -0.074 4.074 14 C -0.151 4.151 15 C 0.064 3.936 16 N -0.354 5.354 17 C -0.366 4.366 18 H 0.104 0.896 19 C -0.264 4.264 20 N -0.604 5.604 21 Si 0.807 3.193 22 H -0.217 1.217 23 H -0.222 1.222 24 H -0.189 1.189 25 C 0.024 3.976 26 C 0.013 3.987 27 N -0.033 5.033 28 O 0.056 5.944 29 H 0.078 0.922 30 H 0.112 0.888 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.108 0.892 34 H 0.082 0.918 35 H 0.078 0.922 36 H 0.113 0.887 37 H 0.076 0.924 38 H 0.202 0.798 39 H 0.094 0.906 40 H 0.103 0.897 41 H 0.126 0.874 42 H 0.119 0.881 43 H 0.076 0.924 44 H 0.106 0.894 45 H 0.017 0.983 46 H 0.027 0.973 47 H 0.054 0.946 48 H 0.063 0.937 49 H 0.065 0.935 50 H 0.093 0.907 51 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -9.636 26.087 -13.688 30.996 hybrid contribution -0.252 -2.337 -0.001 2.351 sum -9.887 23.750 -13.689 29.141 Atomic orbital electron populations 1.21984 0.90951 1.03107 1.03889 1.19437 0.96800 0.95813 0.86333 1.21940 1.01792 0.92767 1.03968 1.21995 1.01552 1.00686 0.95823 1.25017 0.94702 0.92900 0.93964 1.22485 1.05142 0.98005 0.95761 1.23185 1.03782 0.93826 0.98849 1.16898 0.78804 0.85799 0.79738 1.90785 1.47679 1.34199 1.71872 1.48596 1.48865 1.15182 1.20685 1.22328 0.95640 0.87320 0.95827 1.22473 1.03385 0.91447 0.96791 1.21491 0.93427 0.96718 0.95782 1.22481 0.97257 0.96542 0.98786 1.20904 0.93857 0.91931 0.86915 1.44893 1.58822 1.06483 1.25178 1.19486 1.25958 0.87517 1.03635 0.89572 1.25690 1.00395 1.01128 0.99226 1.70209 1.38519 1.26231 1.25424 0.85073 0.76441 0.79196 0.78618 1.21670 1.22222 1.18907 1.21432 0.96957 0.85333 0.93856 1.21892 0.97755 0.88093 0.90920 1.74253 1.18295 0.99998 1.10716 1.84759 1.50690 1.34798 1.24194 0.92226 0.88752 0.92210 0.92040 0.89200 0.91847 0.92242 0.88709 0.92448 0.79830 0.90604 0.89656 0.87364 0.88106 0.92424 0.89445 0.98278 0.97349 0.94609 0.93661 0.93460 0.90696 0.93556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.02 8.36 71.98 0.60 -0.42 16 2 C 0.02 0.16 0.94 -52.93 -0.05 0.11 16 3 C -0.15 -0.98 8.07 71.98 0.58 -0.40 16 4 C -0.14 -1.13 8.36 71.98 0.60 -0.53 16 5 C 0.00 -0.04 5.76 25.01 0.14 0.10 16 6 C -0.19 -4.19 10.40 22.60 0.24 -3.96 16 7 C -0.04 -1.09 7.03 42.96 0.30 -0.79 16 8 C 0.60 20.92 7.88 86.93 0.68 21.61 16 9 O -0.57 -23.89 17.24 -3.71 -0.06 -23.95 16 10 N -0.60 -19.36 3.34 -815.88 -2.73 -22.08 16 11 C 0.11 2.69 5.56 86.82 0.48 3.17 16 12 C -0.10 -2.36 5.97 31.26 0.19 -2.17 16 13 C -0.07 -2.41 0.62 -51.87 -0.03 -2.44 16 14 C -0.11 -4.25 5.92 31.26 0.19 -4.06 16 15 C 0.19 9.73 5.38 86.82 0.47 10.20 16 16 N -0.63 -32.59 3.41 -693.66 -2.37 -34.96 16 17 C -0.24 -13.50 10.28 84.03 0.86 -12.64 16 18 H 0.09 4.63 7.83 -2.91 -0.02 4.61 16 19 C -0.07 -4.22 5.49 84.86 0.47 -3.76 16 20 N -0.95 -59.80 10.30 21.65 0.22 -59.57 16 21 Si 0.98 47.23 29.55 68.60 2.03 49.26 16 22 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 23 H -0.30 -14.37 7.11 99.48 0.71 -13.66 16 24 H -0.26 -11.90 7.11 99.48 0.71 -11.20 16 25 C 0.15 5.83 6.28 86.15 0.54 6.37 16 26 C 0.14 4.92 5.87 86.23 0.51 5.43 16 27 N -0.33 -8.10 9.72 -49.51 -0.48 -8.58 16 28 O 0.13 2.63 10.65 71.88 0.77 3.39 16 29 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 30 H 0.09 0.29 8.14 -2.39 -0.02 0.27 16 31 H 0.06 0.51 8.03 -2.39 -0.02 0.49 16 32 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 33 H 0.09 0.25 8.14 -2.38 -0.02 0.23 16 34 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 35 H 0.06 0.55 8.03 -2.39 -0.02 0.53 16 36 H 0.09 0.34 8.14 -2.38 -0.02 0.32 16 37 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 38 H 0.18 3.68 8.06 -2.91 -0.02 3.65 16 39 H 0.08 1.82 7.69 -2.39 -0.02 1.80 16 40 H 0.09 1.86 7.78 -2.39 -0.02 1.84 16 41 H 0.11 2.07 7.78 -2.39 -0.02 2.05 16 42 H 0.10 1.94 8.08 -2.39 -0.02 1.92 16 43 H 0.06 2.18 8.01 -2.39 -0.02 2.16 16 44 H 0.09 2.87 7.82 -2.39 -0.02 2.85 16 45 H 0.00 -0.06 7.39 -2.39 -0.02 -0.08 16 46 H 0.01 0.48 7.49 -2.38 -0.02 0.46 16 47 H 0.24 14.96 8.31 -92.71 -0.77 14.19 16 48 H 0.05 1.64 8.07 -2.39 -0.02 1.63 16 49 H 0.05 1.79 7.80 -2.39 -0.02 1.78 16 50 H 0.07 2.65 7.85 -2.39 -0.02 2.63 16 51 H 0.05 2.07 7.95 -2.39 -0.02 2.05 16 Total: -1.00 -76.51 404.65 5.05 -71.46 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: 0.91 Total: 9.21 kcal Atomic # 6 Polarization: 9.06 SS G_CDS: 6.77 Total: 15.83 kcal Atomic # 7 Polarization: -119.85 SS G_CDS: -5.35 Total: -125.19 kcal Atomic # 8 Polarization: -21.26 SS G_CDS: 0.70 Total: -20.56 kcal Atomic # 14 Polarization: 47.23 SS G_CDS: 2.03 Total: 49.26 kcal Total: -76.51 5.05 -71.46 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041465233.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.637 kcal (2) G-P(sol) polarization free energy of solvation -76.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.458 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds