Wall clock time and date at job start Wed Apr 1 2020 05:25:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53006 * 109.47286 * 2 1 4 4 C 1.52997 * 109.47167 * 239.99872 * 2 1 3 5 5 C 1.50700 * 109.47023 * 119.99924 * 2 1 3 6 6 C 1.35322 * 126.66409 * 60.00005 * 5 2 1 7 7 C 1.42270 * 103.91989 * 180.02562 * 6 5 2 8 8 C 1.48332 * 126.93949 * 180.02562 * 7 6 5 9 9 O 1.21495 * 119.99715 * 359.97438 * 8 7 6 10 10 N 1.34776 * 120.00510 * 179.97438 * 8 7 6 11 11 C 1.47557 * 125.67104 * 359.97438 * 10 8 7 12 12 C 1.55179 * 105.00562 * 203.86174 * 11 10 8 13 13 C 1.53717 * 101.44055 * 324.52314 * 12 11 10 14 14 C 1.53655 * 111.40429 * 272.72874 * 13 12 11 15 15 C 1.55187 * 101.41613 * 272.69363 * 14 13 12 16 16 N 1.47567 * 105.00590 * 324.50559 * 15 14 13 17 17 C 1.36933 * 125.67603 * 203.86245 * 16 15 14 18 18 H 1.07993 * 120.00253 * 180.02562 * 17 16 15 19 19 C 1.38812 * 119.99847 * 359.97438 * 17 16 15 20 20 N 1.31618 * 120.00008 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 120.00084 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.46923 * 359.97438 * 21 19 17 23 23 H 1.48502 * 109.47406 * 120.00272 * 21 19 17 24 24 H 1.48509 * 109.47126 * 240.00387 * 21 19 17 25 25 C 1.47404 * 108.65169 * 23.85907 * 16 15 14 26 26 C 1.47402 * 125.67540 * 179.97438 * 10 8 7 27 27 N 1.30980 * 106.12519 * 0.25813 * 7 6 5 28 28 O 1.20911 * 111.43979 * 359.53779 * 27 7 6 29 29 H 1.08993 * 109.47052 * 300.00075 * 1 2 3 30 30 H 1.09000 * 109.46469 * 59.99881 * 1 2 3 31 31 H 1.08999 * 109.47038 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.46669 * 179.97438 * 3 2 1 33 33 H 1.08997 * 109.46755 * 299.99679 * 3 2 1 34 34 H 1.09002 * 109.46603 * 60.00204 * 3 2 1 35 35 H 1.08999 * 109.47332 * 300.00053 * 4 2 1 36 36 H 1.09000 * 109.47225 * 60.00710 * 4 2 1 37 37 H 1.09001 * 109.46969 * 179.97438 * 4 2 1 38 38 H 1.07998 * 128.04026 * 359.97438 * 6 5 2 39 39 H 1.09001 * 110.33864 * 322.74314 * 11 10 8 40 40 H 1.08998 * 110.33560 * 84.87372 * 11 10 8 41 41 H 1.08999 * 111.03986 * 82.54132 * 12 11 10 42 42 H 1.09001 * 111.03737 * 206.42669 * 12 11 10 43 43 H 1.08995 * 111.04247 * 30.73168 * 14 13 12 44 44 H 1.09005 * 111.03374 * 154.66356 * 14 13 12 45 45 H 1.08997 * 110.33317 * 205.62446 * 15 14 13 46 46 H 1.08994 * 110.42073 * 83.43339 * 15 14 13 47 47 H 0.97001 * 120.00065 * 179.97438 * 20 19 17 48 48 H 1.08999 * 109.98944 * 238.55017 * 25 16 15 49 49 H 1.08996 * 109.98841 * 117.23534 * 25 16 15 50 50 H 1.09002 * 109.98537 * 297.24080 * 26 10 8 51 51 H 1.08994 * 109.98950 * 58.50847 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0323 -0.7104 1.2305 6 6 1.7899 -1.9959 1.5769 7 6 2.4861 -2.1558 2.8073 8 6 2.5601 -3.3835 3.6365 9 8 1.9854 -4.3928 3.2801 10 7 3.2649 -3.3793 4.7854 11 6 4.0081 -2.2290 5.3347 12 6 5.0923 -2.8528 6.2531 13 6 4.3422 -4.0634 6.8317 14 6 3.5543 -3.6834 8.0949 15 6 4.6284 -3.8799 9.1976 16 7 5.4259 -5.0388 8.7519 17 6 6.1614 -5.8614 9.5628 18 1 6.7133 -6.6863 9.1372 19 6 6.1983 -5.6344 10.9317 20 7 5.5260 -4.6287 11.4503 21 14 7.2021 -6.7561 12.0378 22 1 7.8590 -7.8035 11.2153 23 1 8.2371 -5.9585 12.7434 24 1 6.3076 -7.3985 13.0342 25 6 5.2992 -5.1636 7.2887 26 6 3.4214 -4.5230 5.7020 27 7 3.0442 -0.9987 3.0626 28 8 2.8054 -0.1917 2.1945 29 1 -0.3633 0.5138 0.8899 30 1 -0.3632 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1300 1.4424 0.0005 33 1 1.6768 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6767 -1.7489 -1.2492 36 1 1.6768 -0.2074 -2.1392 37 1 3.1300 -0.7208 -1.2494 38 1 1.2036 -2.7296 1.0437 39 1 4.4747 -1.6603 4.5303 40 1 3.3420 -1.5890 5.9131 41 1 5.9597 -3.1706 5.6746 42 1 5.3837 -2.1588 7.0416 43 1 3.2227 -2.6460 8.0522 44 1 2.7102 -4.3563 8.2467 45 1 4.1535 -4.0928 10.1553 46 1 5.2587 -2.9942 9.2766 47 1 5.5515 -4.4703 12.4070 48 1 4.8921 -6.1416 7.0320 49 1 6.2729 -5.0296 6.8175 50 1 2.4513 -4.8120 6.1062 51 1 3.8705 -5.3645 5.1745 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001041465236.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:25:31 Heat of formation + Delta-G solvation = 54.007137 kcal Electronic energy + Delta-G solvation = -30972.931067 eV Core-core repulsion = 26876.426213 eV Total energy + Delta-G solvation = -4096.504855 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -45.33357 -40.29680 -38.46814 -37.81699 -35.74226 -34.19105 -32.70815 -31.24091 -30.39056 -29.18911 -28.65821 -27.90877 -27.82903 -26.15811 -24.64021 -23.52684 -23.10113 -22.76362 -21.24619 -20.24382 -19.09931 -18.56400 -18.02583 -17.49833 -16.98435 -16.65185 -15.96581 -15.54959 -15.08402 -14.83931 -14.60488 -14.52763 -14.37867 -13.96517 -13.85454 -13.59174 -13.11015 -12.92200 -12.90145 -12.82312 -12.68755 -12.54855 -12.20832 -12.04034 -11.88689 -11.70598 -11.62547 -11.50655 -11.37944 -11.32585 -11.01877 -10.93505 -10.75937 -10.65500 -10.34936 -10.20990 -10.02333 -9.95701 -9.76131 -9.71887 -9.50944 -8.68735 -8.63663 -6.83798 -5.65778 -3.07071 0.91883 1.42706 2.55163 2.76012 3.05767 3.39749 3.45441 3.47829 3.73006 3.95537 4.30513 4.34221 4.46939 4.50056 4.72041 4.74020 4.78713 4.97533 4.98722 5.03941 5.08375 5.16237 5.24126 5.34009 5.34788 5.36021 5.39264 5.43953 5.49549 5.55979 5.65222 5.68220 5.73038 5.77620 5.80509 5.83755 5.95773 6.04018 6.11412 6.23996 6.25242 6.33560 6.54578 6.60417 6.74466 6.82238 7.37546 7.50055 7.62633 7.72944 7.85032 7.99700 8.35050 9.21571 9.82068 10.47198 11.38364 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.034219 B = 0.001964 C = 0.001925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.053660 B =14252.033042 C =14540.168715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.016 3.984 3 C -0.148 4.148 4 C -0.142 4.142 5 C -0.023 4.023 6 C -0.179 4.179 7 C -0.016 4.016 8 C 0.607 3.393 9 O -0.529 6.529 10 N -0.599 5.599 11 C 0.099 3.901 12 C -0.113 4.113 13 C -0.082 4.082 14 C -0.132 4.132 15 C 0.155 3.845 16 N -0.603 5.603 17 C -0.220 4.220 18 H 0.078 0.922 19 C -0.013 4.013 20 N -0.922 5.922 21 Si 0.914 3.086 22 H -0.280 1.280 23 H -0.291 1.291 24 H -0.291 1.291 25 C 0.152 3.848 26 C 0.126 3.874 27 N -0.328 5.328 28 O 0.122 5.878 29 H 0.062 0.938 30 H 0.072 0.928 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.068 0.932 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.071 0.929 37 H 0.062 0.938 38 H 0.178 0.822 39 H 0.085 0.915 40 H 0.071 0.929 41 H 0.075 0.925 42 H 0.091 0.909 43 H 0.059 0.941 44 H 0.063 0.937 45 H 0.105 0.895 46 H 0.013 0.987 47 H 0.251 0.749 48 H 0.027 0.973 49 H 0.026 0.974 50 H 0.074 0.926 51 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.275 13.094 -24.979 29.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.014 3.986 3 C -0.205 4.205 4 C -0.200 4.200 5 C -0.086 4.086 6 C -0.201 4.201 7 C -0.175 4.175 8 C 0.393 3.607 9 O -0.405 6.405 10 N -0.332 5.332 11 C -0.023 4.023 12 C -0.151 4.151 13 C -0.083 4.083 14 C -0.170 4.170 15 C 0.030 3.970 16 N -0.330 5.330 17 C -0.349 4.349 18 H 0.096 0.904 19 C -0.208 4.208 20 N -0.571 5.571 21 Si 0.745 3.255 22 H -0.205 1.205 23 H -0.218 1.218 24 H -0.218 1.218 25 C 0.026 3.974 26 C 0.004 3.996 27 N -0.029 5.029 28 O 0.047 5.953 29 H 0.081 0.919 30 H 0.090 0.910 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.087 0.913 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.090 0.910 37 H 0.081 0.919 38 H 0.196 0.804 39 H 0.103 0.897 40 H 0.089 0.911 41 H 0.093 0.907 42 H 0.109 0.891 43 H 0.078 0.922 44 H 0.081 0.919 45 H 0.123 0.877 46 H 0.031 0.969 47 H 0.062 0.938 48 H 0.045 0.955 49 H 0.044 0.956 50 H 0.092 0.908 51 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -8.789 12.896 -23.957 28.592 hybrid contribution 0.126 -0.982 0.173 1.005 sum -8.662 11.914 -23.785 27.976 Atomic orbital electron populations 1.21955 0.91962 1.03056 1.02986 1.19204 0.96141 0.95372 0.87835 1.21917 1.01994 0.93625 1.03000 1.21956 1.01861 1.00679 0.95466 1.24440 0.96531 0.93591 0.94050 1.22322 1.04647 0.96831 0.96347 1.23427 1.01958 0.94258 0.97837 1.16475 0.79375 0.85290 0.79585 1.90797 1.46122 1.32512 1.71024 1.48497 1.48933 1.14950 1.20775 1.22650 0.93875 0.88169 0.97655 1.22660 0.96590 0.97366 0.98488 1.21563 0.95906 0.96436 0.94360 1.22923 0.98983 0.99804 0.95337 1.21972 0.89776 0.88642 0.96600 1.44608 1.56201 1.32230 0.99925 1.19124 1.21125 1.06459 0.88153 0.90419 1.24788 1.00729 0.98569 0.96699 1.69810 1.45521 1.30703 1.11084 0.85997 0.79235 0.79635 0.80630 1.20536 1.21793 1.21765 1.21044 0.95043 0.94416 0.86915 1.21953 1.00178 0.88012 0.89429 1.74300 1.18430 1.00373 1.09828 1.84796 1.50942 1.35508 1.24007 0.91852 0.90955 0.91733 0.91664 0.91282 0.91655 0.91730 0.90960 0.91866 0.80446 0.89651 0.91060 0.90662 0.89085 0.92189 0.91860 0.87693 0.96897 0.93803 0.95479 0.95591 0.90758 0.90882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.64 8.36 37.16 0.31 -0.33 16 2 C 0.02 0.09 0.94 -155.66 -0.15 -0.06 16 3 C -0.15 -0.68 8.07 37.16 0.30 -0.38 16 4 C -0.14 -0.64 8.36 37.16 0.31 -0.33 16 5 C -0.02 -0.20 5.76 -35.35 -0.20 -0.40 16 6 C -0.18 -1.87 10.40 -39.07 -0.41 -2.28 16 7 C -0.02 -0.21 7.02 -82.53 -0.58 -0.79 16 8 C 0.61 9.65 7.88 -12.11 -0.10 9.56 16 9 O -0.53 -9.66 17.28 5.37 0.09 -9.57 16 10 N -0.60 -9.23 3.34 -171.79 -0.57 -9.81 16 11 C 0.10 1.37 6.05 -2.31 -0.01 1.36 16 12 C -0.11 -1.71 5.89 -25.20 -0.15 -1.86 16 13 C -0.08 -1.41 0.62 -153.99 -0.10 -1.50 16 14 C -0.13 -2.47 5.89 -25.23 -0.15 -2.62 16 15 C 0.15 3.69 5.77 -2.30 -0.01 3.68 16 16 N -0.60 -15.30 3.41 -170.41 -0.58 -15.89 16 17 C -0.22 -6.13 10.28 -15.06 -0.15 -6.28 16 18 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 19 C -0.01 -0.35 5.49 -17.43 -0.10 -0.45 16 20 N -0.92 -26.80 10.09 55.49 0.56 -26.24 16 21 Si 0.91 22.13 29.55 -169.99 -5.02 17.11 16 22 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 23 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 24 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 25 C 0.15 3.14 6.42 -3.64 -0.02 3.12 16 26 C 0.13 2.04 6.04 -3.64 -0.02 2.02 16 27 N -0.33 -4.14 9.31 33.29 0.31 -3.83 16 28 O 0.12 1.29 10.65 17.25 0.18 1.47 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 30 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.06 0.30 8.03 -51.93 -0.42 -0.12 16 32 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 34 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.06 0.30 8.03 -51.93 -0.42 -0.12 16 36 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 37 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 38 H 0.18 1.60 8.06 -52.49 -0.42 1.17 16 39 H 0.09 1.13 6.26 -51.93 -0.33 0.81 16 40 H 0.07 0.97 8.10 -51.93 -0.42 0.55 16 41 H 0.07 1.11 7.80 -51.93 -0.40 0.70 16 42 H 0.09 1.40 7.89 -51.93 -0.41 0.99 16 43 H 0.06 1.01 7.88 -51.93 -0.41 0.60 16 44 H 0.06 1.19 7.79 -51.93 -0.40 0.79 16 45 H 0.11 2.84 5.89 -51.93 -0.31 2.54 16 46 H 0.01 0.33 8.10 -51.93 -0.42 -0.09 16 47 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 48 H 0.03 0.56 7.78 -51.93 -0.40 0.16 16 49 H 0.03 0.54 7.61 -51.93 -0.40 0.14 16 50 H 0.07 1.22 7.61 -51.93 -0.40 0.83 16 51 H 0.07 1.19 7.78 -51.93 -0.40 0.78 16 LS Contribution 401.96 15.07 6.06 6.06 Total: -1.00 -32.02 401.96 -8.66 -40.68 By element: Atomic # 1 Polarization: 6.01 SS G_CDS: -8.46 Total: -2.45 kcal Atomic # 6 Polarization: 3.68 SS G_CDS: -1.23 Total: 2.46 kcal Atomic # 7 Polarization: -55.48 SS G_CDS: -0.29 Total: -55.76 kcal Atomic # 8 Polarization: -8.38 SS G_CDS: 0.28 Total: -8.10 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -32.02 -8.66 -40.68 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041465236.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.691 kcal (2) G-P(sol) polarization free energy of solvation -32.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.684 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds