Wall clock time and date at job start Wed Apr 1 2020 05:25:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53006 * 109.47286 * 2 1 4 4 C 1.52997 * 109.47167 * 239.99872 * 2 1 3 5 5 C 1.50700 * 109.47023 * 119.99924 * 2 1 3 6 6 C 1.35322 * 126.66409 * 60.00005 * 5 2 1 7 7 C 1.42270 * 103.91989 * 180.02562 * 6 5 2 8 8 C 1.48332 * 126.93949 * 180.02562 * 7 6 5 9 9 O 1.21495 * 119.99715 * 359.97438 * 8 7 6 10 10 N 1.34776 * 120.00510 * 179.97438 * 8 7 6 11 11 C 1.47557 * 125.67104 * 359.97438 * 10 8 7 12 12 C 1.55179 * 105.00562 * 203.86174 * 11 10 8 13 13 C 1.53717 * 101.44055 * 324.52314 * 12 11 10 14 14 C 1.53655 * 111.40429 * 272.72874 * 13 12 11 15 15 C 1.55187 * 101.41613 * 272.69363 * 14 13 12 16 16 N 1.47567 * 105.00590 * 324.50559 * 15 14 13 17 17 C 1.36933 * 125.67603 * 203.86245 * 16 15 14 18 18 H 1.07993 * 120.00253 * 180.02562 * 17 16 15 19 19 C 1.38812 * 119.99847 * 359.97438 * 17 16 15 20 20 N 1.31618 * 120.00008 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 120.00084 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.46923 * 359.97438 * 21 19 17 23 23 H 1.48502 * 109.47406 * 120.00272 * 21 19 17 24 24 H 1.48509 * 109.47126 * 240.00387 * 21 19 17 25 25 C 1.47404 * 108.65169 * 23.85907 * 16 15 14 26 26 C 1.47402 * 125.67540 * 179.97438 * 10 8 7 27 27 N 1.30980 * 106.12519 * 0.25813 * 7 6 5 28 28 O 1.20911 * 111.43979 * 359.53779 * 27 7 6 29 29 H 1.08993 * 109.47052 * 300.00075 * 1 2 3 30 30 H 1.09000 * 109.46469 * 59.99881 * 1 2 3 31 31 H 1.08999 * 109.47038 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.46669 * 179.97438 * 3 2 1 33 33 H 1.08997 * 109.46755 * 299.99679 * 3 2 1 34 34 H 1.09002 * 109.46603 * 60.00204 * 3 2 1 35 35 H 1.08999 * 109.47332 * 300.00053 * 4 2 1 36 36 H 1.09000 * 109.47225 * 60.00710 * 4 2 1 37 37 H 1.09001 * 109.46969 * 179.97438 * 4 2 1 38 38 H 1.07998 * 128.04026 * 359.97438 * 6 5 2 39 39 H 1.09001 * 110.33864 * 322.74314 * 11 10 8 40 40 H 1.08998 * 110.33560 * 84.87372 * 11 10 8 41 41 H 1.08999 * 111.03986 * 82.54132 * 12 11 10 42 42 H 1.09001 * 111.03737 * 206.42669 * 12 11 10 43 43 H 1.08995 * 111.04247 * 30.73168 * 14 13 12 44 44 H 1.09005 * 111.03374 * 154.66356 * 14 13 12 45 45 H 1.08997 * 110.33317 * 205.62446 * 15 14 13 46 46 H 1.08994 * 110.42073 * 83.43339 * 15 14 13 47 47 H 0.97001 * 120.00065 * 179.97438 * 20 19 17 48 48 H 1.08999 * 109.98944 * 238.55017 * 25 16 15 49 49 H 1.08996 * 109.98841 * 117.23534 * 25 16 15 50 50 H 1.09002 * 109.98537 * 297.24080 * 26 10 8 51 51 H 1.08994 * 109.98950 * 58.50847 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0323 -0.7104 1.2305 6 6 1.7899 -1.9959 1.5769 7 6 2.4861 -2.1558 2.8073 8 6 2.5601 -3.3835 3.6365 9 8 1.9854 -4.3928 3.2801 10 7 3.2649 -3.3793 4.7854 11 6 4.0081 -2.2290 5.3347 12 6 5.0923 -2.8528 6.2531 13 6 4.3422 -4.0634 6.8317 14 6 3.5543 -3.6834 8.0949 15 6 4.6284 -3.8799 9.1976 16 7 5.4259 -5.0388 8.7519 17 6 6.1614 -5.8614 9.5628 18 1 6.7133 -6.6863 9.1372 19 6 6.1983 -5.6344 10.9317 20 7 5.5260 -4.6287 11.4503 21 14 7.2021 -6.7561 12.0378 22 1 7.8590 -7.8035 11.2153 23 1 8.2371 -5.9585 12.7434 24 1 6.3076 -7.3985 13.0342 25 6 5.2992 -5.1636 7.2887 26 6 3.4214 -4.5230 5.7020 27 7 3.0442 -0.9987 3.0626 28 8 2.8054 -0.1917 2.1945 29 1 -0.3633 0.5138 0.8899 30 1 -0.3632 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1300 1.4424 0.0005 33 1 1.6768 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6767 -1.7489 -1.2492 36 1 1.6768 -0.2074 -2.1392 37 1 3.1300 -0.7208 -1.2494 38 1 1.2036 -2.7296 1.0437 39 1 4.4747 -1.6603 4.5303 40 1 3.3420 -1.5890 5.9131 41 1 5.9597 -3.1706 5.6746 42 1 5.3837 -2.1588 7.0416 43 1 3.2227 -2.6460 8.0522 44 1 2.7102 -4.3563 8.2467 45 1 4.1535 -4.0928 10.1553 46 1 5.2587 -2.9942 9.2766 47 1 5.5515 -4.4703 12.4070 48 1 4.8921 -6.1416 7.0320 49 1 6.2729 -5.0296 6.8175 50 1 2.4513 -4.8120 6.1062 51 1 3.8705 -5.3645 5.1745 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001041465236.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:25:30 Heat of formation + Delta-G solvation = 36.523339 kcal Electronic energy + Delta-G solvation = -30973.689222 eV Core-core repulsion = 26876.426213 eV Total energy + Delta-G solvation = -4097.263009 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -46.21719 -41.63224 -39.88475 -38.27798 -37.32856 -35.18758 -34.45897 -32.29950 -31.81478 -30.63517 -30.29409 -28.34965 -28.15095 -27.66734 -26.20721 -24.55153 -24.30489 -23.92562 -22.18606 -21.99338 -20.41021 -19.74171 -18.92156 -18.84454 -18.34058 -17.74019 -17.29594 -16.77980 -16.71787 -15.96395 -15.79073 -15.58913 -15.12370 -14.99292 -14.95376 -14.61351 -14.50094 -14.44078 -14.12059 -13.94797 -13.71086 -13.26699 -13.19671 -13.09601 -13.02190 -12.77001 -12.70398 -12.69529 -12.54516 -12.47836 -12.16625 -12.00231 -11.99340 -11.82412 -11.77434 -11.68125 -11.61814 -11.52188 -11.48575 -11.22686 -10.75060 -10.47392 -9.92819 -8.88793 -7.77906 -5.21623 -0.02838 0.60366 1.46382 1.47066 1.51291 1.57538 1.90596 1.93239 2.48874 2.71117 3.20279 3.31278 3.44314 3.46020 3.58355 3.76791 3.82096 3.88710 3.93508 3.97343 4.14349 4.19108 4.22154 4.27298 4.39576 4.53913 4.59294 4.66989 4.68438 4.77301 4.79961 4.81071 4.82237 4.85363 4.91055 4.95425 4.97325 5.02762 5.03043 5.11735 5.12839 5.19578 5.25853 5.31464 5.40921 5.44563 5.47027 5.63082 5.81815 6.16015 6.30498 6.66200 6.98668 7.10688 7.77027 8.41295 9.24251 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.034219 B = 0.001964 C = 0.001925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.053660 B =14252.033042 C =14540.168715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.017 3.983 3 C -0.149 4.149 4 C -0.142 4.142 5 C -0.004 4.004 6 C -0.187 4.187 7 C -0.039 4.039 8 C 0.605 3.395 9 O -0.559 6.559 10 N -0.600 5.600 11 C 0.109 3.891 12 C -0.108 4.108 13 C -0.070 4.070 14 C -0.116 4.116 15 C 0.159 3.841 16 N -0.625 5.625 17 C -0.236 4.236 18 H 0.080 0.920 19 C -0.068 4.068 20 N -0.948 5.948 21 Si 0.979 3.021 22 H -0.268 1.268 23 H -0.292 1.292 24 H -0.292 1.292 25 C 0.149 3.851 26 C 0.132 3.868 27 N -0.340 5.340 28 O 0.129 5.871 29 H 0.056 0.944 30 H 0.093 0.907 31 H 0.062 0.938 32 H 0.060 0.940 33 H 0.089 0.911 34 H 0.060 0.940 35 H 0.062 0.938 36 H 0.093 0.907 37 H 0.057 0.943 38 H 0.189 0.811 39 H 0.095 0.905 40 H 0.079 0.921 41 H 0.081 0.919 42 H 0.090 0.910 43 H 0.084 0.916 44 H 0.061 0.939 45 H 0.070 0.930 46 H -0.005 1.005 47 H 0.247 0.753 48 H 0.028 0.972 49 H 0.031 0.969 50 H 0.072 0.928 51 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.678 14.265 -27.389 32.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.016 3.984 3 C -0.206 4.206 4 C -0.199 4.199 5 C -0.067 4.067 6 C -0.210 4.210 7 C -0.196 4.196 8 C 0.393 3.607 9 O -0.437 6.437 10 N -0.333 5.333 11 C -0.013 4.013 12 C -0.146 4.146 13 C -0.071 4.071 14 C -0.154 4.154 15 C 0.035 3.965 16 N -0.351 5.351 17 C -0.365 4.365 18 H 0.098 0.902 19 C -0.260 4.260 20 N -0.598 5.598 21 Si 0.808 3.192 22 H -0.192 1.192 23 H -0.219 1.219 24 H -0.219 1.219 25 C 0.024 3.976 26 C 0.010 3.990 27 N -0.040 5.040 28 O 0.053 5.947 29 H 0.076 0.924 30 H 0.112 0.888 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.108 0.892 34 H 0.079 0.921 35 H 0.081 0.919 36 H 0.112 0.888 37 H 0.076 0.924 38 H 0.206 0.794 39 H 0.114 0.886 40 H 0.097 0.903 41 H 0.100 0.900 42 H 0.108 0.892 43 H 0.102 0.898 44 H 0.080 0.920 45 H 0.088 0.912 46 H 0.013 0.987 47 H 0.057 0.943 48 H 0.045 0.955 49 H 0.049 0.951 50 H 0.090 0.910 51 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -9.183 14.067 -26.384 31.278 hybrid contribution 0.243 -1.301 0.841 1.568 sum -8.940 12.766 -25.543 29.922 Atomic orbital electron populations 1.21985 0.90963 1.03216 1.03780 1.19439 0.96782 0.95695 0.86512 1.21946 1.01776 0.93003 1.03852 1.21985 1.01547 1.00771 0.95635 1.25055 0.94658 0.93066 0.93961 1.22495 1.04976 0.97883 0.95667 1.23255 1.03806 0.93763 0.98822 1.16783 0.78654 0.85765 0.79502 1.90769 1.47368 1.33845 1.71751 1.48527 1.49036 1.15007 1.20695 1.22626 0.93369 0.87618 0.97642 1.22625 0.97005 0.96311 0.98618 1.21373 0.95392 0.96252 0.94091 1.22749 0.97388 1.01310 0.93968 1.21734 0.90393 0.87516 0.96906 1.44888 1.56154 1.32217 1.01837 1.19472 1.21237 1.06852 0.88911 0.90222 1.25614 1.02173 1.00182 0.98068 1.70055 1.46726 1.32130 1.10894 0.84989 0.77606 0.78015 0.78589 1.19227 1.21908 1.21904 1.21183 0.96124 0.95738 0.84579 1.21762 0.99659 0.88409 0.89162 1.74269 1.18787 1.00243 1.10664 1.84770 1.50850 1.35052 1.24076 0.92449 0.88817 0.91936 0.92069 0.89224 0.92096 0.91930 0.88829 0.92422 0.79385 0.88648 0.90300 0.90030 0.89194 0.89773 0.91993 0.91220 0.98744 0.94349 0.95451 0.95148 0.90986 0.90922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.90 8.36 71.98 0.60 -0.30 16 2 C 0.02 0.14 0.94 -52.93 -0.05 0.09 16 3 C -0.15 -0.96 8.07 71.98 0.58 -0.38 16 4 C -0.14 -0.89 8.36 71.98 0.60 -0.29 16 5 C 0.00 -0.06 5.76 25.01 0.14 0.08 16 6 C -0.19 -3.68 10.40 22.60 0.24 -3.45 16 7 C -0.04 -1.01 7.02 42.96 0.30 -0.71 16 8 C 0.61 18.88 7.88 86.93 0.68 19.56 16 9 O -0.56 -20.34 17.28 -3.70 -0.06 -20.40 16 10 N -0.60 -17.87 3.34 -815.73 -2.73 -20.59 16 11 C 0.11 2.85 6.05 86.92 0.53 3.37 16 12 C -0.11 -3.11 5.89 31.58 0.19 -2.92 16 13 C -0.07 -2.36 0.62 -51.84 -0.03 -2.39 16 14 C -0.12 -4.28 5.89 31.56 0.19 -4.10 16 15 C 0.16 7.77 5.77 86.93 0.50 8.27 16 16 N -0.62 -32.18 3.41 -693.06 -2.36 -34.54 16 17 C -0.24 -13.29 10.28 84.03 0.86 -12.43 16 18 H 0.08 4.33 7.83 -2.91 -0.02 4.31 16 19 C -0.07 -3.87 5.49 84.86 0.47 -3.41 16 20 N -0.95 -56.58 10.09 21.65 0.22 -56.36 16 21 Si 0.98 46.06 29.55 68.60 2.03 48.09 16 22 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 23 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 24 H -0.29 -13.70 7.11 99.48 0.71 -13.00 16 25 C 0.15 6.15 6.42 86.14 0.55 6.70 16 26 C 0.13 4.17 6.04 86.15 0.52 4.69 16 27 N -0.34 -8.10 9.31 -49.51 -0.46 -8.56 16 28 O 0.13 2.51 10.65 71.91 0.77 3.27 16 29 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 30 H 0.09 0.22 8.14 -2.39 -0.02 0.21 16 31 H 0.06 0.44 8.03 -2.39 -0.02 0.42 16 32 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 33 H 0.09 0.24 8.14 -2.39 -0.02 0.22 16 34 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 35 H 0.06 0.43 8.03 -2.39 -0.02 0.42 16 36 H 0.09 0.22 8.14 -2.39 -0.02 0.20 16 37 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 38 H 0.19 3.16 8.06 -2.91 -0.02 3.14 16 39 H 0.10 2.35 6.26 -2.39 -0.01 2.34 16 40 H 0.08 1.97 8.10 -2.39 -0.02 1.96 16 41 H 0.08 2.27 7.80 -2.39 -0.02 2.26 16 42 H 0.09 2.66 7.89 -2.39 -0.02 2.64 16 43 H 0.08 2.71 7.88 -2.39 -0.02 2.69 16 44 H 0.06 2.31 7.79 -2.38 -0.02 2.29 16 45 H 0.07 3.92 5.89 -2.39 -0.01 3.91 16 46 H -0.01 -0.28 8.10 -2.39 -0.02 -0.30 16 47 H 0.25 14.28 8.31 -92.71 -0.77 13.51 16 48 H 0.03 1.13 7.78 -2.39 -0.02 1.11 16 49 H 0.03 1.24 7.61 -2.39 -0.02 1.22 16 50 H 0.07 2.32 7.61 -2.39 -0.02 2.30 16 51 H 0.07 2.31 7.78 -2.39 -0.02 2.29 16 Total: -1.00 -70.22 401.96 5.18 -65.04 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: 0.91 Total: 11.67 kcal Atomic # 6 Polarization: 5.52 SS G_CDS: 6.87 Total: 12.39 kcal Atomic # 7 Polarization: -114.72 SS G_CDS: -5.33 Total: -120.06 kcal Atomic # 8 Polarization: -17.83 SS G_CDS: 0.70 Total: -17.13 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 2.03 Total: 48.09 kcal Total: -70.22 5.18 -65.04 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041465236.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.563 kcal (2) G-P(sol) polarization free energy of solvation -70.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.039 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds