Wall clock time and date at job start Wed Apr 1 2020 05:06:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53004 * 109.46900 * 2 1 4 4 C 1.50703 * 109.46714 * 179.97438 * 3 2 1 5 5 O 1.33484 * 126.83155 * 269.99579 * 4 3 2 6 6 N 1.20660 * 113.16243 * 180.02562 * 5 4 3 7 7 C 1.30020 * 112.29509 * 359.73670 * 6 5 4 8 8 C 1.50700 * 127.33338 * 180.27180 * 7 6 5 9 9 C 1.37366 * 126.82431 * 90.00236 * 4 3 2 10 10 C 1.47392 * 128.56932 * 359.96495 * 9 4 3 11 11 O 1.21606 * 120.00625 * 89.99297 * 10 9 4 12 12 N 1.34779 * 119.99461 * 269.99997 * 10 9 4 13 13 C 1.46592 * 119.75606 * 0.02562 * 12 10 9 14 14 C 1.53880 * 110.71465 * 227.71805 * 13 12 10 15 15 C 1.51978 * 107.28506 * 308.19329 * 14 13 12 16 16 H 1.08996 * 111.01739 * 303.48414 * 15 14 13 17 17 C 1.54222 * 114.95781 * 175.44763 * 15 14 13 18 18 C 1.55301 * 101.57883 * 206.50327 * 17 15 14 19 19 N 1.48152 * 107.21315 * 22.50815 * 18 17 15 20 20 C 1.36935 * 126.39825 * 184.87505 * 19 18 17 21 21 H 1.07998 * 120.00315 * 180.02562 * 20 19 18 22 22 C 1.38810 * 120.00017 * 0.02562 * 20 19 18 23 23 N 1.31619 * 119.99985 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00137 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.46967 * 0.02562 * 24 22 20 26 26 H 1.48503 * 109.46955 * 120.00209 * 24 22 20 27 27 H 1.48497 * 109.47297 * 240.00106 * 24 22 20 28 28 C 1.45509 * 107.20738 * 4.89894 * 19 18 17 29 29 H 1.08997 * 109.57687 * 85.86872 * 28 19 18 30 30 C 1.47800 * 119.74936 * 179.97438 * 12 10 9 31 31 H 1.09000 * 109.46519 * 60.00172 * 1 2 3 32 32 H 1.08998 * 109.46822 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47067 * 300.00168 * 1 2 3 34 34 H 1.08998 * 109.47067 * 239.99832 * 2 1 3 35 35 H 1.08996 * 109.46910 * 120.00130 * 2 1 3 36 36 H 1.08998 * 109.47397 * 60.00034 * 3 2 1 37 37 H 1.08999 * 109.46964 * 299.99935 * 3 2 1 38 38 H 1.08996 * 109.46928 * 270.14655 * 8 7 6 39 39 H 1.08997 * 109.46926 * 30.15041 * 8 7 6 40 40 H 1.08998 * 109.46817 * 150.15006 * 8 7 6 41 41 H 1.09008 * 109.22541 * 348.03570 * 13 12 10 42 42 H 1.08998 * 109.23049 * 107.39681 * 13 12 10 43 43 H 1.09003 * 109.89620 * 67.63715 * 14 13 12 44 44 H 1.09003 * 109.89607 * 188.66944 * 14 13 12 45 45 H 1.08994 * 111.10430 * 88.43725 * 17 15 14 46 46 H 1.09000 * 111.03439 * 324.54095 * 17 15 14 47 47 H 1.09002 * 109.92135 * 263.05884 * 18 17 15 48 48 H 1.09002 * 109.92006 * 141.95601 * 18 17 15 49 49 H 0.96997 * 120.00295 * 180.02562 * 23 22 20 50 50 H 1.09000 * 110.06521 * 9.55426 * 30 12 10 51 51 H 1.08997 * 110.06959 * 247.98345 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5470 1.4425 0.0006 5 8 4.3468 1.4427 1.0694 6 7 5.5193 1.4431 0.7847 7 6 5.7149 1.4377 -0.5007 8 6 7.0369 1.4307 -1.2239 9 6 4.3708 1.4424 -1.0986 10 6 3.9997 1.4415 -2.5250 11 8 3.8460 2.4942 -3.1141 12 7 3.8306 0.2738 -3.1766 13 6 4.0166 -0.9921 -2.4611 14 6 4.9061 -1.9503 -3.2726 15 6 4.3158 -2.0399 -4.6702 16 1 3.2750 -2.3617 -4.6350 17 6 5.1383 -2.8761 -5.6715 18 6 4.7280 -2.2340 -7.0248 19 7 4.2394 -0.8666 -6.7310 20 6 3.6930 0.0114 -7.6285 21 1 3.3698 0.9882 -7.3002 22 6 3.5544 -0.3541 -8.9605 23 7 3.9478 -1.5447 -9.3606 24 14 2.8084 0.8433 -10.1848 25 1 2.4498 2.1047 -9.4879 26 1 3.7942 1.1336 -11.2568 27 1 1.5887 0.2438 -10.7832 28 6 4.4491 -0.6305 -5.3105 29 1 5.4622 -0.2632 -5.1470 30 6 3.4580 0.2793 -4.6068 31 1 -0.3632 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5139 0.8900 34 1 1.8934 -0.5139 -0.8900 35 1 1.8933 -0.5138 0.8899 36 1 1.6767 1.9564 0.8900 37 1 1.6767 1.9563 -0.8900 38 1 7.3603 2.4566 -1.3998 39 1 7.7805 0.9143 -0.6168 40 1 6.9262 0.9160 -2.1784 41 1 4.4872 -0.7943 -1.4980 42 1 3.0448 -1.4573 -2.2962 43 1 5.9224 -1.5594 -3.3236 44 1 4.9111 -2.9358 -2.8068 45 1 4.8503 -3.9267 -5.6352 46 1 6.2073 -2.7600 -5.4930 47 1 3.9346 -2.8202 -7.4886 48 1 5.5906 -2.1854 -7.6894 49 1 3.8514 -1.8000 -10.2914 50 1 3.5285 1.2904 -5.0078 51 1 2.4450 -0.1036 -4.7309 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042054787.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:06:19 Heat of formation + Delta-G solvation = 43.744764 kcal Electronic energy + Delta-G solvation = -32527.427595 eV Core-core repulsion = 28430.477730 eV Total energy + Delta-G solvation = -4096.949865 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -45.03054 -40.19284 -38.26352 -35.96396 -35.41599 -34.67753 -32.93107 -32.04677 -31.29653 -29.60881 -28.88725 -28.55016 -27.35521 -25.12860 -24.61621 -23.09303 -22.41243 -22.10302 -20.57436 -20.14759 -19.69468 -19.21928 -17.89887 -17.54143 -16.75428 -16.39588 -15.88725 -15.64452 -14.97289 -14.81761 -14.49869 -14.32609 -14.15594 -13.80290 -13.72041 -13.47981 -13.34862 -13.24492 -13.02707 -12.97457 -12.67800 -12.62654 -12.30280 -11.95638 -11.89019 -11.68367 -11.58636 -11.40945 -11.31709 -11.04437 -10.93302 -10.82188 -10.78824 -10.23807 -10.11732 -10.00263 -9.95766 -9.89060 -9.68437 -9.58454 -9.40546 -8.65709 -8.53653 -6.88646 -5.74409 -3.08430 1.14253 1.76438 2.41077 2.66618 3.10211 3.39611 3.46584 3.48519 3.91720 4.04604 4.45498 4.48634 4.57708 4.61758 4.77031 4.84126 4.87942 4.95122 5.08286 5.18885 5.27333 5.31665 5.32101 5.34398 5.42310 5.44058 5.46473 5.51747 5.57626 5.62975 5.72321 5.75333 5.82688 5.84740 5.87299 5.94664 5.97706 6.01536 6.07473 6.12332 6.31210 6.41972 6.51204 6.63766 6.69568 6.99590 7.41579 7.52706 7.57977 7.79070 8.06349 8.14732 8.20767 9.16409 9.79370 10.45537 11.37847 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012963 B = 0.003245 C = 0.003139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2159.439088 B = 8625.351629 C = 8916.825679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.124 4.124 3 C -0.044 4.044 4 C 0.014 3.986 5 O 0.096 5.904 6 N -0.357 5.357 7 C 0.054 3.946 8 C -0.079 4.079 9 C -0.236 4.236 10 C 0.594 3.406 11 O -0.526 6.526 12 N -0.592 5.592 13 C 0.110 3.890 14 C -0.119 4.119 15 C -0.113 4.113 16 H 0.078 0.922 17 C -0.137 4.137 18 C 0.177 3.823 19 N -0.591 5.591 20 C -0.229 4.229 21 H 0.080 0.920 22 C -0.005 4.005 23 N -0.921 5.921 24 Si 0.909 3.091 25 H -0.278 1.278 26 H -0.290 1.290 27 H -0.290 1.290 28 C 0.157 3.843 29 H 0.024 0.976 30 C 0.117 3.883 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.057 0.943 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.094 0.906 37 H 0.100 0.900 38 H 0.086 0.914 39 H 0.082 0.918 40 H 0.085 0.915 41 H 0.074 0.926 42 H 0.067 0.933 43 H 0.067 0.933 44 H 0.074 0.926 45 H 0.060 0.940 46 H 0.056 0.944 47 H 0.056 0.944 48 H 0.038 0.962 49 H 0.252 0.748 50 H 0.094 0.906 51 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.396 -0.865 21.089 21.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.161 4.161 3 C -0.082 4.082 4 C -0.049 4.049 5 O 0.034 5.966 6 N -0.064 5.064 7 C -0.108 4.108 8 C -0.136 4.136 9 C -0.243 4.243 10 C 0.379 3.621 11 O -0.402 6.402 12 N -0.325 5.325 13 C -0.013 4.013 14 C -0.158 4.158 15 C -0.133 4.133 16 H 0.096 0.904 17 C -0.175 4.175 18 C 0.053 3.947 19 N -0.316 5.316 20 C -0.357 4.357 21 H 0.098 0.902 22 C -0.202 4.202 23 N -0.568 5.568 24 Si 0.739 3.261 25 H -0.204 1.204 26 H -0.217 1.217 27 H -0.217 1.217 28 C 0.048 3.952 29 H 0.041 0.959 30 C -0.005 4.005 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.113 0.887 37 H 0.118 0.882 38 H 0.104 0.896 39 H 0.101 0.899 40 H 0.104 0.896 41 H 0.092 0.908 42 H 0.085 0.915 43 H 0.086 0.914 44 H 0.092 0.908 45 H 0.078 0.922 46 H 0.075 0.925 47 H 0.074 0.926 48 H 0.056 0.944 49 H 0.062 0.938 50 H 0.112 0.888 51 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -0.745 -0.293 21.558 21.573 hybrid contribution -0.550 0.554 -1.437 1.636 sum -1.295 0.262 20.121 20.164 Atomic orbital electron populations 1.21750 0.94506 1.02379 1.02254 1.21602 0.96787 0.94523 1.03235 1.20371 0.82934 0.99558 1.05346 1.24594 0.95653 0.99557 0.85090 1.84511 1.11117 1.68027 1.32949 1.73611 0.95895 1.20312 1.16570 1.24759 0.96127 1.00920 0.88947 1.20240 0.89621 1.04055 0.99695 1.21962 0.92958 1.14040 0.95351 1.16961 0.77238 0.84021 0.83883 1.90833 1.50857 1.31013 1.67479 1.48214 1.67557 1.05074 1.11684 1.21739 1.00076 0.84454 0.95015 1.21805 0.99164 0.98593 0.96196 1.22379 0.99739 0.98343 0.92816 0.90407 1.22804 0.98519 0.98362 0.97854 1.21541 0.98294 0.84473 0.90430 1.44170 1.72360 1.13823 1.01274 1.19086 1.33181 0.95075 0.88353 0.90195 1.24777 1.01296 0.97024 0.97055 1.69950 1.52314 1.18975 1.15555 0.86083 0.78463 0.80129 0.81384 1.20354 1.21743 1.21745 1.20985 0.95577 0.92403 0.86237 0.95887 1.21818 0.98913 1.02937 0.76808 0.92220 0.92055 0.92408 0.91055 0.91140 0.88723 0.88201 0.89565 0.89912 0.89636 0.90777 0.91500 0.91399 0.90787 0.92167 0.92526 0.92608 0.94416 0.93794 0.88779 0.90783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.91 37.16 0.37 -0.61 16 2 C -0.12 -0.91 5.92 -26.73 -0.16 -1.07 16 3 C -0.04 -0.37 5.66 -27.88 -0.16 -0.53 16 4 C 0.01 0.16 6.80 -34.62 -0.24 -0.07 16 5 O 0.10 1.13 11.06 18.67 0.21 1.33 16 6 N -0.36 -4.60 12.01 34.78 0.42 -4.19 16 7 C 0.05 0.69 7.44 -79.76 -0.59 0.10 16 8 C -0.08 -0.83 10.49 36.01 0.38 -0.45 16 9 C -0.24 -3.13 4.16 -102.89 -0.43 -3.56 16 10 C 0.59 9.39 7.46 -12.53 -0.09 9.29 16 11 O -0.53 -10.36 16.47 5.27 0.09 -10.27 16 12 N -0.59 -8.78 3.01 -173.99 -0.52 -9.30 16 13 C 0.11 1.29 5.74 -3.53 -0.02 1.27 16 14 C -0.12 -1.46 5.73 -26.79 -0.15 -1.62 16 15 C -0.11 -1.81 2.63 -89.24 -0.23 -2.05 16 16 H 0.08 1.28 8.13 -51.93 -0.42 0.86 16 17 C -0.14 -2.39 6.58 -24.87 -0.16 -2.55 16 18 C 0.18 4.11 5.44 -1.91 -0.01 4.10 16 19 N -0.59 -14.45 3.35 -162.87 -0.55 -15.00 16 20 C -0.23 -6.20 9.88 -15.06 -0.15 -6.34 16 21 H 0.08 2.13 7.41 -52.49 -0.39 1.74 16 22 C -0.01 -0.14 5.49 -17.43 -0.10 -0.24 16 23 N -0.92 -26.49 10.43 55.49 0.58 -25.91 16 24 Si 0.91 21.99 29.55 -169.99 -5.02 16.96 16 25 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 26 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 27 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 28 C 0.16 3.09 2.77 -67.79 -0.19 2.90 16 29 H 0.02 0.50 7.90 -51.93 -0.41 0.09 16 30 C 0.12 2.12 5.69 -3.92 -0.02 2.09 16 31 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.07 0.60 6.46 -51.93 -0.34 0.26 16 35 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 36 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.10 0.93 8.11 -51.93 -0.42 0.51 16 38 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.07 0.80 6.16 -51.92 -0.32 0.48 16 42 H 0.07 0.70 7.03 -51.93 -0.36 0.33 16 43 H 0.07 0.86 7.97 -51.93 -0.41 0.45 16 44 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 46 H 0.06 0.93 8.13 -51.93 -0.42 0.51 16 47 H 0.06 1.44 7.21 -51.93 -0.37 1.06 16 48 H 0.04 0.98 7.76 -51.93 -0.40 0.57 16 49 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 50 H 0.09 1.94 6.76 -51.93 -0.35 1.59 16 51 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 LS Contribution 401.89 15.07 6.06 6.06 Total: -1.00 -31.84 401.89 -9.12 -40.96 By element: Atomic # 1 Polarization: 7.10 SS G_CDS: -8.41 Total: -1.32 kcal Atomic # 6 Polarization: 2.63 SS G_CDS: -1.96 Total: 0.68 kcal Atomic # 7 Polarization: -54.33 SS G_CDS: -0.07 Total: -54.40 kcal Atomic # 8 Polarization: -9.23 SS G_CDS: 0.29 Total: -8.94 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -31.84 -9.12 -40.96 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042054787.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.703 kcal (2) G-P(sol) polarization free energy of solvation -31.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.958 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds