Wall clock time and date at job start Wed Apr 1 2020 05:06:19
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53006 * 1
3 3 C 1.53004 * 109.46900 * 2 1
4 4 C 1.50703 * 109.46714 * 179.97438 * 3 2 1
5 5 O 1.33484 * 126.83155 * 269.99579 * 4 3 2
6 6 N 1.20660 * 113.16243 * 180.02562 * 5 4 3
7 7 C 1.30020 * 112.29509 * 359.73670 * 6 5 4
8 8 C 1.50700 * 127.33338 * 180.27180 * 7 6 5
9 9 C 1.37366 * 126.82431 * 90.00236 * 4 3 2
10 10 C 1.47392 * 128.56932 * 359.96495 * 9 4 3
11 11 O 1.21606 * 120.00625 * 89.99297 * 10 9 4
12 12 N 1.34779 * 119.99461 * 269.99997 * 10 9 4
13 13 C 1.46592 * 119.75606 * 0.02562 * 12 10 9
14 14 C 1.53880 * 110.71465 * 227.71805 * 13 12 10
15 15 C 1.51978 * 107.28506 * 308.19329 * 14 13 12
16 16 H 1.08996 * 111.01739 * 303.48414 * 15 14 13
17 17 C 1.54222 * 114.95781 * 175.44763 * 15 14 13
18 18 C 1.55301 * 101.57883 * 206.50327 * 17 15 14
19 19 N 1.48152 * 107.21315 * 22.50815 * 18 17 15
20 20 C 1.36935 * 126.39825 * 184.87505 * 19 18 17
21 21 H 1.07998 * 120.00315 * 180.02562 * 20 19 18
22 22 C 1.38810 * 120.00017 * 0.02562 * 20 19 18
23 23 N 1.31619 * 119.99985 * 0.02562 * 22 20 19
24 24 Si 1.86800 * 120.00137 * 179.97438 * 22 20 19
25 25 H 1.48500 * 109.46967 * 0.02562 * 24 22 20
26 26 H 1.48503 * 109.46955 * 120.00209 * 24 22 20
27 27 H 1.48497 * 109.47297 * 240.00106 * 24 22 20
28 28 C 1.45509 * 107.20738 * 4.89894 * 19 18 17
29 29 H 1.08997 * 109.57687 * 85.86872 * 28 19 18
30 30 C 1.47800 * 119.74936 * 179.97438 * 12 10 9
31 31 H 1.09000 * 109.46519 * 60.00172 * 1 2 3
32 32 H 1.08998 * 109.46822 * 179.97438 * 1 2 3
33 33 H 1.08998 * 109.47067 * 300.00168 * 1 2 3
34 34 H 1.08998 * 109.47067 * 239.99832 * 2 1 3
35 35 H 1.08996 * 109.46910 * 120.00130 * 2 1 3
36 36 H 1.08998 * 109.47397 * 60.00034 * 3 2 1
37 37 H 1.08999 * 109.46964 * 299.99935 * 3 2 1
38 38 H 1.08996 * 109.46928 * 270.14655 * 8 7 6
39 39 H 1.08997 * 109.46926 * 30.15041 * 8 7 6
40 40 H 1.08998 * 109.46817 * 150.15006 * 8 7 6
41 41 H 1.09008 * 109.22541 * 348.03570 * 13 12 10
42 42 H 1.08998 * 109.23049 * 107.39681 * 13 12 10
43 43 H 1.09003 * 109.89620 * 67.63715 * 14 13 12
44 44 H 1.09003 * 109.89607 * 188.66944 * 14 13 12
45 45 H 1.08994 * 111.10430 * 88.43725 * 17 15 14
46 46 H 1.09000 * 111.03439 * 324.54095 * 17 15 14
47 47 H 1.09002 * 109.92135 * 263.05884 * 18 17 15
48 48 H 1.09002 * 109.92006 * 141.95601 * 18 17 15
49 49 H 0.96997 * 120.00295 * 180.02562 * 23 22 20
50 50 H 1.09000 * 110.06521 * 9.55426 * 30 12 10
51 51 H 1.08997 * 110.06959 * 247.98345 * 30 12 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 6 2.0400 1.4426 0.0000
4 6 3.5470 1.4425 0.0006
5 8 4.3468 1.4427 1.0694
6 7 5.5193 1.4431 0.7847
7 6 5.7149 1.4377 -0.5007
8 6 7.0369 1.4307 -1.2239
9 6 4.3708 1.4424 -1.0986
10 6 3.9997 1.4415 -2.5250
11 8 3.8460 2.4942 -3.1141
12 7 3.8306 0.2738 -3.1766
13 6 4.0166 -0.9921 -2.4611
14 6 4.9061 -1.9503 -3.2726
15 6 4.3158 -2.0399 -4.6702
16 1 3.2750 -2.3617 -4.6350
17 6 5.1383 -2.8761 -5.6715
18 6 4.7280 -2.2340 -7.0248
19 7 4.2394 -0.8666 -6.7310
20 6 3.6930 0.0114 -7.6285
21 1 3.3698 0.9882 -7.3002
22 6 3.5544 -0.3541 -8.9605
23 7 3.9478 -1.5447 -9.3606
24 14 2.8084 0.8433 -10.1848
25 1 2.4498 2.1047 -9.4879
26 1 3.7942 1.1336 -11.2568
27 1 1.5887 0.2438 -10.7832
28 6 4.4491 -0.6305 -5.3105
29 1 5.4622 -0.2632 -5.1470
30 6 3.4580 0.2793 -4.6068
31 1 -0.3632 0.5138 -0.8900
32 1 -0.3633 -1.0277 -0.0005
33 1 -0.3633 0.5139 0.8900
34 1 1.8934 -0.5139 -0.8900
35 1 1.8933 -0.5138 0.8899
36 1 1.6767 1.9564 0.8900
37 1 1.6767 1.9563 -0.8900
38 1 7.3603 2.4566 -1.3998
39 1 7.7805 0.9143 -0.6168
40 1 6.9262 0.9160 -2.1784
41 1 4.4872 -0.7943 -1.4980
42 1 3.0448 -1.4573 -2.2962
43 1 5.9224 -1.5594 -3.3236
44 1 4.9111 -2.9358 -2.8068
45 1 4.8503 -3.9267 -5.6352
46 1 6.2073 -2.7600 -5.4930
47 1 3.9346 -2.8202 -7.4886
48 1 5.5906 -2.1854 -7.6894
49 1 3.8514 -1.8000 -10.2914
50 1 3.5285 1.2904 -5.0078
51 1 2.4450 -0.1036 -4.7309
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001042054787.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:06:19
Heat of formation + Delta-G solvation = 43.744764 kcal
Electronic energy + Delta-G solvation = -32527.427595 eV
Core-core repulsion = 28430.477730 eV
Total energy + Delta-G solvation = -4096.949865 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 1.00 seconds
Orbital eigenvalues (eV)
-45.03054 -40.19284 -38.26352 -35.96396 -35.41599 -34.67753 -32.93107 -32.04677
-31.29653 -29.60881 -28.88725 -28.55016 -27.35521 -25.12860 -24.61621 -23.09303
-22.41243 -22.10302 -20.57436 -20.14759 -19.69468 -19.21928 -17.89887 -17.54143
-16.75428 -16.39588 -15.88725 -15.64452 -14.97289 -14.81761 -14.49869 -14.32609
-14.15594 -13.80290 -13.72041 -13.47981 -13.34862 -13.24492 -13.02707 -12.97457
-12.67800 -12.62654 -12.30280 -11.95638 -11.89019 -11.68367 -11.58636 -11.40945
-11.31709 -11.04437 -10.93302 -10.82188 -10.78824 -10.23807 -10.11732 -10.00263
-9.95766 -9.89060 -9.68437 -9.58454 -9.40546 -8.65709 -8.53653 -6.88646
-5.74409 -3.08430 1.14253 1.76438 2.41077 2.66618 3.10211 3.39611
3.46584 3.48519 3.91720 4.04604 4.45498 4.48634 4.57708 4.61758
4.77031 4.84126 4.87942 4.95122 5.08286 5.18885 5.27333 5.31665
5.32101 5.34398 5.42310 5.44058 5.46473 5.51747 5.57626 5.62975
5.72321 5.75333 5.82688 5.84740 5.87299 5.94664 5.97706 6.01536
6.07473 6.12332 6.31210 6.41972 6.51204 6.63766 6.69568 6.99590
7.41579 7.52706 7.57977 7.79070 8.06349 8.14732 8.20767 9.16409
9.79370 10.45537 11.37847
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.012963 B = 0.003245 C = 0.003139
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2159.439088 B = 8625.351629 C = 8916.825679
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.152 4.152
2 C -0.124 4.124
3 C -0.044 4.044
4 C 0.014 3.986
5 O 0.096 5.904
6 N -0.357 5.357
7 C 0.054 3.946
8 C -0.079 4.079
9 C -0.236 4.236
10 C 0.594 3.406
11 O -0.526 6.526
12 N -0.592 5.592
13 C 0.110 3.890
14 C -0.119 4.119
15 C -0.113 4.113
16 H 0.078 0.922
17 C -0.137 4.137
18 C 0.177 3.823
19 N -0.591 5.591
20 C -0.229 4.229
21 H 0.080 0.920
22 C -0.005 4.005
23 N -0.921 5.921
24 Si 0.909 3.091
25 H -0.278 1.278
26 H -0.290 1.290
27 H -0.290 1.290
28 C 0.157 3.843
29 H 0.024 0.976
30 C 0.117 3.883
31 H 0.059 0.941
32 H 0.060 0.940
33 H 0.057 0.943
34 H 0.071 0.929
35 H 0.070 0.930
36 H 0.094 0.906
37 H 0.100 0.900
38 H 0.086 0.914
39 H 0.082 0.918
40 H 0.085 0.915
41 H 0.074 0.926
42 H 0.067 0.933
43 H 0.067 0.933
44 H 0.074 0.926
45 H 0.060 0.940
46 H 0.056 0.944
47 H 0.056 0.944
48 H 0.038 0.962
49 H 0.252 0.748
50 H 0.094 0.906
51 H 0.074 0.926
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.396 -0.865 21.089 21.153
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.209 4.209
2 C -0.161 4.161
3 C -0.082 4.082
4 C -0.049 4.049
5 O 0.034 5.966
6 N -0.064 5.064
7 C -0.108 4.108
8 C -0.136 4.136
9 C -0.243 4.243
10 C 0.379 3.621
11 O -0.402 6.402
12 N -0.325 5.325
13 C -0.013 4.013
14 C -0.158 4.158
15 C -0.133 4.133
16 H 0.096 0.904
17 C -0.175 4.175
18 C 0.053 3.947
19 N -0.316 5.316
20 C -0.357 4.357
21 H 0.098 0.902
22 C -0.202 4.202
23 N -0.568 5.568
24 Si 0.739 3.261
25 H -0.204 1.204
26 H -0.217 1.217
27 H -0.217 1.217
28 C 0.048 3.952
29 H 0.041 0.959
30 C -0.005 4.005
31 H 0.078 0.922
32 H 0.079 0.921
33 H 0.076 0.924
34 H 0.089 0.911
35 H 0.089 0.911
36 H 0.113 0.887
37 H 0.118 0.882
38 H 0.104 0.896
39 H 0.101 0.899
40 H 0.104 0.896
41 H 0.092 0.908
42 H 0.085 0.915
43 H 0.086 0.914
44 H 0.092 0.908
45 H 0.078 0.922
46 H 0.075 0.925
47 H 0.074 0.926
48 H 0.056 0.944
49 H 0.062 0.938
50 H 0.112 0.888
51 H 0.092 0.908
Dipole moment (debyes) X Y Z Total
from point charges -0.745 -0.293 21.558 21.573
hybrid contribution -0.550 0.554 -1.437 1.636
sum -1.295 0.262 20.121 20.164
Atomic orbital electron populations
1.21750 0.94506 1.02379 1.02254 1.21602 0.96787 0.94523 1.03235
1.20371 0.82934 0.99558 1.05346 1.24594 0.95653 0.99557 0.85090
1.84511 1.11117 1.68027 1.32949 1.73611 0.95895 1.20312 1.16570
1.24759 0.96127 1.00920 0.88947 1.20240 0.89621 1.04055 0.99695
1.21962 0.92958 1.14040 0.95351 1.16961 0.77238 0.84021 0.83883
1.90833 1.50857 1.31013 1.67479 1.48214 1.67557 1.05074 1.11684
1.21739 1.00076 0.84454 0.95015 1.21805 0.99164 0.98593 0.96196
1.22379 0.99739 0.98343 0.92816 0.90407 1.22804 0.98519 0.98362
0.97854 1.21541 0.98294 0.84473 0.90430 1.44170 1.72360 1.13823
1.01274 1.19086 1.33181 0.95075 0.88353 0.90195 1.24777 1.01296
0.97024 0.97055 1.69950 1.52314 1.18975 1.15555 0.86083 0.78463
0.80129 0.81384 1.20354 1.21743 1.21745 1.20985 0.95577 0.92403
0.86237 0.95887 1.21818 0.98913 1.02937 0.76808 0.92220 0.92055
0.92408 0.91055 0.91140 0.88723 0.88201 0.89565 0.89912 0.89636
0.90777 0.91500 0.91399 0.90787 0.92167 0.92526 0.92608 0.94416
0.93794 0.88779 0.90783
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -0.98 9.91 37.16 0.37 -0.61 16
2 C -0.12 -0.91 5.92 -26.73 -0.16 -1.07 16
3 C -0.04 -0.37 5.66 -27.88 -0.16 -0.53 16
4 C 0.01 0.16 6.80 -34.62 -0.24 -0.07 16
5 O 0.10 1.13 11.06 18.67 0.21 1.33 16
6 N -0.36 -4.60 12.01 34.78 0.42 -4.19 16
7 C 0.05 0.69 7.44 -79.76 -0.59 0.10 16
8 C -0.08 -0.83 10.49 36.01 0.38 -0.45 16
9 C -0.24 -3.13 4.16 -102.89 -0.43 -3.56 16
10 C 0.59 9.39 7.46 -12.53 -0.09 9.29 16
11 O -0.53 -10.36 16.47 5.27 0.09 -10.27 16
12 N -0.59 -8.78 3.01 -173.99 -0.52 -9.30 16
13 C 0.11 1.29 5.74 -3.53 -0.02 1.27 16
14 C -0.12 -1.46 5.73 -26.79 -0.15 -1.62 16
15 C -0.11 -1.81 2.63 -89.24 -0.23 -2.05 16
16 H 0.08 1.28 8.13 -51.93 -0.42 0.86 16
17 C -0.14 -2.39 6.58 -24.87 -0.16 -2.55 16
18 C 0.18 4.11 5.44 -1.91 -0.01 4.10 16
19 N -0.59 -14.45 3.35 -162.87 -0.55 -15.00 16
20 C -0.23 -6.20 9.88 -15.06 -0.15 -6.34 16
21 H 0.08 2.13 7.41 -52.49 -0.39 1.74 16
22 C -0.01 -0.14 5.49 -17.43 -0.10 -0.24 16
23 N -0.92 -26.49 10.43 55.49 0.58 -25.91 16
24 Si 0.91 21.99 29.55 -169.99 -5.02 16.96 16
25 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16
26 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16
27 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16
28 C 0.16 3.09 2.77 -67.79 -0.19 2.90 16
29 H 0.02 0.50 7.90 -51.93 -0.41 0.09 16
30 C 0.12 2.12 5.69 -3.92 -0.02 2.09 16
31 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16
32 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16
33 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16
34 H 0.07 0.60 6.46 -51.93 -0.34 0.26 16
35 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16
36 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16
37 H 0.10 0.93 8.11 -51.93 -0.42 0.51 16
38 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16
39 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16
40 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16
41 H 0.07 0.80 6.16 -51.92 -0.32 0.48 16
42 H 0.07 0.70 7.03 -51.93 -0.36 0.33 16
43 H 0.07 0.86 7.97 -51.93 -0.41 0.45 16
44 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16
45 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16
46 H 0.06 0.93 8.13 -51.93 -0.42 0.51 16
47 H 0.06 1.44 7.21 -51.93 -0.37 1.06 16
48 H 0.04 0.98 7.76 -51.93 -0.40 0.57 16
49 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16
50 H 0.09 1.94 6.76 -51.93 -0.35 1.59 16
51 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16
LS Contribution 401.89 15.07 6.06 6.06
Total: -1.00 -31.84 401.89 -9.12 -40.96
By element:
Atomic # 1 Polarization: 7.10 SS G_CDS: -8.41 Total: -1.32 kcal
Atomic # 6 Polarization: 2.63 SS G_CDS: -1.96 Total: 0.68 kcal
Atomic # 7 Polarization: -54.33 SS G_CDS: -0.07 Total: -54.40 kcal
Atomic # 8 Polarization: -9.23 SS G_CDS: 0.29 Total: -8.94 kcal
Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.96 kcal
Total LS contribution 6.06 Total: 6.06 kcal
Total: -31.84 -9.12 -40.96 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001042054787.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 84.703 kcal
(2) G-P(sol) polarization free energy of solvation -31.843 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.860 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.116 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.958 kcal
(6) G-S(sol) free energy of system = (1) + (5) 43.745 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.00 seconds