Wall clock time and date at job start Wed Apr 1 2020 05:06:18
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53006 * 1
3 3 C 1.53004 * 109.46900 * 2 1
4 4 C 1.50703 * 109.46714 * 179.97438 * 3 2 1
5 5 O 1.33484 * 126.83155 * 269.99579 * 4 3 2
6 6 N 1.20660 * 113.16243 * 180.02562 * 5 4 3
7 7 C 1.30020 * 112.29509 * 359.73670 * 6 5 4
8 8 C 1.50700 * 127.33338 * 180.27180 * 7 6 5
9 9 C 1.37366 * 126.82431 * 90.00236 * 4 3 2
10 10 C 1.47392 * 128.56932 * 359.96495 * 9 4 3
11 11 O 1.21606 * 120.00625 * 89.99297 * 10 9 4
12 12 N 1.34779 * 119.99461 * 269.99997 * 10 9 4
13 13 C 1.46592 * 119.75606 * 0.02562 * 12 10 9
14 14 C 1.53880 * 110.71465 * 227.71805 * 13 12 10
15 15 C 1.51978 * 107.28506 * 308.19329 * 14 13 12
16 16 H 1.08996 * 111.01739 * 303.48414 * 15 14 13
17 17 C 1.54222 * 114.95781 * 175.44763 * 15 14 13
18 18 C 1.55301 * 101.57883 * 206.50327 * 17 15 14
19 19 N 1.48152 * 107.21315 * 22.50815 * 18 17 15
20 20 C 1.36935 * 126.39825 * 184.87505 * 19 18 17
21 21 H 1.07998 * 120.00315 * 180.02562 * 20 19 18
22 22 C 1.38810 * 120.00017 * 0.02562 * 20 19 18
23 23 N 1.31619 * 119.99985 * 0.02562 * 22 20 19
24 24 Si 1.86800 * 120.00137 * 179.97438 * 22 20 19
25 25 H 1.48500 * 109.46967 * 0.02562 * 24 22 20
26 26 H 1.48503 * 109.46955 * 120.00209 * 24 22 20
27 27 H 1.48497 * 109.47297 * 240.00106 * 24 22 20
28 28 C 1.45509 * 107.20738 * 4.89894 * 19 18 17
29 29 H 1.08997 * 109.57687 * 85.86872 * 28 19 18
30 30 C 1.47800 * 119.74936 * 179.97438 * 12 10 9
31 31 H 1.09000 * 109.46519 * 60.00172 * 1 2 3
32 32 H 1.08998 * 109.46822 * 179.97438 * 1 2 3
33 33 H 1.08998 * 109.47067 * 300.00168 * 1 2 3
34 34 H 1.08998 * 109.47067 * 239.99832 * 2 1 3
35 35 H 1.08996 * 109.46910 * 120.00130 * 2 1 3
36 36 H 1.08998 * 109.47397 * 60.00034 * 3 2 1
37 37 H 1.08999 * 109.46964 * 299.99935 * 3 2 1
38 38 H 1.08996 * 109.46928 * 270.14655 * 8 7 6
39 39 H 1.08997 * 109.46926 * 30.15041 * 8 7 6
40 40 H 1.08998 * 109.46817 * 150.15006 * 8 7 6
41 41 H 1.09008 * 109.22541 * 348.03570 * 13 12 10
42 42 H 1.08998 * 109.23049 * 107.39681 * 13 12 10
43 43 H 1.09003 * 109.89620 * 67.63715 * 14 13 12
44 44 H 1.09003 * 109.89607 * 188.66944 * 14 13 12
45 45 H 1.08994 * 111.10430 * 88.43725 * 17 15 14
46 46 H 1.09000 * 111.03439 * 324.54095 * 17 15 14
47 47 H 1.09002 * 109.92135 * 263.05884 * 18 17 15
48 48 H 1.09002 * 109.92006 * 141.95601 * 18 17 15
49 49 H 0.96997 * 120.00295 * 180.02562 * 23 22 20
50 50 H 1.09000 * 110.06521 * 9.55426 * 30 12 10
51 51 H 1.08997 * 110.06959 * 247.98345 * 30 12 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 6 2.0400 1.4426 0.0000
4 6 3.5470 1.4425 0.0006
5 8 4.3468 1.4427 1.0694
6 7 5.5193 1.4431 0.7847
7 6 5.7149 1.4377 -0.5007
8 6 7.0369 1.4307 -1.2239
9 6 4.3708 1.4424 -1.0986
10 6 3.9997 1.4415 -2.5250
11 8 3.8460 2.4942 -3.1141
12 7 3.8306 0.2738 -3.1766
13 6 4.0166 -0.9921 -2.4611
14 6 4.9061 -1.9503 -3.2726
15 6 4.3158 -2.0399 -4.6702
16 1 3.2750 -2.3617 -4.6350
17 6 5.1383 -2.8761 -5.6715
18 6 4.7280 -2.2340 -7.0248
19 7 4.2394 -0.8666 -6.7310
20 6 3.6930 0.0114 -7.6285
21 1 3.3698 0.9882 -7.3002
22 6 3.5544 -0.3541 -8.9605
23 7 3.9478 -1.5447 -9.3606
24 14 2.8084 0.8433 -10.1848
25 1 2.4498 2.1047 -9.4879
26 1 3.7942 1.1336 -11.2568
27 1 1.5887 0.2438 -10.7832
28 6 4.4491 -0.6305 -5.3105
29 1 5.4622 -0.2632 -5.1470
30 6 3.4580 0.2793 -4.6068
31 1 -0.3632 0.5138 -0.8900
32 1 -0.3633 -1.0277 -0.0005
33 1 -0.3633 0.5139 0.8900
34 1 1.8934 -0.5139 -0.8900
35 1 1.8933 -0.5138 0.8899
36 1 1.6767 1.9564 0.8900
37 1 1.6767 1.9563 -0.8900
38 1 7.3603 2.4566 -1.3998
39 1 7.7805 0.9143 -0.6168
40 1 6.9262 0.9160 -2.1784
41 1 4.4872 -0.7943 -1.4980
42 1 3.0448 -1.4573 -2.2962
43 1 5.9224 -1.5594 -3.3236
44 1 4.9111 -2.9358 -2.8068
45 1 4.8503 -3.9267 -5.6352
46 1 6.2073 -2.7600 -5.4930
47 1 3.9346 -2.8202 -7.4886
48 1 5.5906 -2.1854 -7.6894
49 1 3.8514 -1.8000 -10.2914
50 1 3.5285 1.2904 -5.0078
51 1 2.4450 -0.1036 -4.7309
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001042054787.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:06:18
Heat of formation + Delta-G solvation = 25.842317 kcal
Electronic energy + Delta-G solvation = -32528.203903 eV
Core-core repulsion = 28430.477730 eV
Total energy + Delta-G solvation = -4097.726173 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 1.06 seconds
Orbital eigenvalues (eV)
-45.98383 -41.51284 -39.72538 -36.96152 -36.58724 -35.64522 -34.65407 -32.96920
-32.83126 -31.03756 -30.21302 -29.76776 -28.11859 -26.56730 -26.23972 -24.35288
-23.64118 -22.79041 -21.81686 -21.66911 -20.96832 -20.38893 -18.90942 -18.76646
-18.37676 -17.62889 -17.07083 -16.82091 -16.50224 -16.00687 -15.74043 -15.68260
-15.41932 -15.20926 -14.72828 -14.48620 -14.42069 -14.30960 -14.19682 -13.90080
-13.83151 -13.73657 -13.58132 -13.26243 -13.15010 -13.08272 -12.78167 -12.57701
-12.51727 -12.26653 -12.22296 -12.11092 -11.98776 -11.78989 -11.56112 -11.54301
-11.40851 -11.36548 -11.05640 -10.91419 -10.73174 -10.40919 -9.82093 -8.90691
-7.86303 -5.21048 0.22345 0.78921 1.20275 1.44023 1.45098 1.55062
1.63058 2.01114 2.49107 2.97811 3.16637 3.32411 3.41519 3.53016
3.73315 3.82167 3.92881 3.94692 4.02375 4.05022 4.14936 4.24147
4.25674 4.30783 4.41916 4.47323 4.51830 4.60159 4.61764 4.66178
4.68396 4.74180 4.78344 4.79588 4.86067 4.88803 4.93532 5.03344
5.08842 5.13956 5.20836 5.22961 5.27968 5.34255 5.45376 5.48670
5.57477 5.66980 5.79147 6.18997 6.21587 6.90897 7.08396 7.13743
7.76633 8.43228 9.24686
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.012963 B = 0.003245 C = 0.003139
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2159.439088 B = 8625.351629 C = 8916.825679
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.150 4.150
2 C -0.119 4.119
3 C -0.046 4.046
4 C 0.039 3.961
5 O 0.100 5.900
6 N -0.368 5.368
7 C 0.053 3.947
8 C -0.080 4.080
9 C -0.262 4.262
10 C 0.599 3.401
11 O -0.574 6.574
12 N -0.586 5.586
13 C 0.108 3.892
14 C -0.110 4.110
15 C -0.095 4.095
16 H 0.080 0.920
17 C -0.121 4.121
18 C 0.180 3.820
19 N -0.612 5.612
20 C -0.235 4.235
21 H 0.076 0.924
22 C -0.060 4.060
23 N -0.947 5.947
24 Si 0.969 3.031
25 H -0.271 1.271
26 H -0.293 1.293
27 H -0.288 1.288
28 C 0.149 3.851
29 H 0.010 0.990
30 C 0.131 3.869
31 H 0.048 0.952
32 H 0.066 0.934
33 H 0.069 0.931
34 H 0.061 0.939
35 H 0.083 0.917
36 H 0.120 0.880
37 H 0.088 0.912
38 H 0.088 0.912
39 H 0.102 0.898
40 H 0.080 0.920
41 H 0.092 0.908
42 H 0.090 0.910
43 H 0.067 0.933
44 H 0.113 0.887
45 H 0.086 0.914
46 H 0.069 0.931
47 H 0.023 0.977
48 H -0.001 1.001
49 H 0.247 0.753
50 H 0.060 0.940
51 H 0.074 0.926
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.811 -1.876 24.318 24.458
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.208 4.208
2 C -0.157 4.157
3 C -0.084 4.084
4 C -0.025 4.025
5 O 0.040 5.960
6 N -0.075 5.075
7 C -0.109 4.109
8 C -0.137 4.137
9 C -0.269 4.269
10 C 0.386 3.614
11 O -0.454 6.454
12 N -0.317 5.317
13 C -0.014 4.014
14 C -0.148 4.148
15 C -0.115 4.115
16 H 0.098 0.902
17 C -0.159 4.159
18 C 0.056 3.944
19 N -0.337 5.337
20 C -0.364 4.364
21 H 0.094 0.906
22 C -0.253 4.253
23 N -0.596 5.596
24 Si 0.798 3.202
25 H -0.196 1.196
26 H -0.220 1.220
27 H -0.215 1.215
28 C 0.041 3.959
29 H 0.027 0.973
30 C 0.007 3.993
31 H 0.068 0.932
32 H 0.085 0.915
33 H 0.088 0.912
34 H 0.080 0.920
35 H 0.102 0.898
36 H 0.138 0.862
37 H 0.106 0.894
38 H 0.106 0.894
39 H 0.121 0.879
40 H 0.098 0.902
41 H 0.110 0.890
42 H 0.108 0.892
43 H 0.085 0.915
44 H 0.131 0.869
45 H 0.105 0.895
46 H 0.088 0.912
47 H 0.042 0.958
48 H 0.017 0.983
49 H 0.056 0.944
50 H 0.079 0.921
51 H 0.092 0.908
Dipole moment (debyes) X Y Z Total
from point charges -1.156 -1.327 24.849 24.911
hybrid contribution -0.417 0.910 -2.402 2.602
sum -1.572 -0.417 22.447 22.506
Atomic orbital electron populations
1.21744 0.93825 1.02794 1.02406 1.21583 0.97284 0.93413 1.03400
1.20564 0.81001 1.00750 1.06054 1.25001 0.96495 0.96831 0.84194
1.84512 1.10934 1.67762 1.32834 1.73611 0.96362 1.21053 1.16486
1.25030 0.96519 1.00419 0.88946 1.20322 0.89330 1.04432 0.99610
1.21689 0.94041 1.17069 0.94148 1.17231 0.76097 0.83331 0.84741
1.90806 1.53011 1.32777 1.68824 1.48190 1.66863 1.06402 1.10253
1.22006 1.01508 0.82739 0.95106 1.21798 0.98726 1.00758 0.93516
1.22291 1.00065 0.94626 0.94519 0.90208 1.22677 0.99517 0.99441
0.94269 1.21355 0.95587 0.84223 0.93246 1.44423 1.72043 1.13976
1.03250 1.19342 1.32382 0.95492 0.89200 0.90580 1.25513 1.02453
0.98639 0.98700 1.70149 1.53704 1.20429 1.15353 0.85146 0.77465
0.78532 0.79068 1.19565 1.22043 1.21518 1.21122 0.94943 0.95510
0.84346 0.97301 1.21402 0.98506 1.00561 0.78783 0.93235 0.91517
0.91152 0.92010 0.89786 0.86163 0.89362 0.89381 0.87903 0.90153
0.89002 0.89239 0.91466 0.86918 0.89506 0.91198 0.95842 0.98318
0.94401 0.92102 0.90751
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.53 9.91 71.98 0.71 -0.82 16
2 C -0.12 -1.38 5.92 30.60 0.18 -1.20 16
3 C -0.05 -0.65 5.66 29.85 0.17 -0.48 16
4 C 0.04 0.77 6.80 25.48 0.17 0.94 16
5 O 0.10 2.09 11.06 77.07 0.85 2.95 16
6 N -0.37 -8.63 12.01 -44.78 -0.54 -9.17 16
7 C 0.05 1.25 7.44 45.16 0.34 1.58 16
8 C -0.08 -1.55 10.49 71.24 0.75 -0.80 16
9 C -0.26 -6.58 4.16 -18.74 -0.08 -6.65 16
10 C 0.60 18.77 7.46 86.65 0.65 19.41 16
11 O -0.57 -23.35 16.47 -4.05 -0.07 -23.41 16
12 N -0.59 -16.81 3.01 -822.64 -2.48 -19.29 16
13 C 0.11 2.18 5.74 86.66 0.50 2.68 16
14 C -0.11 -2.27 5.73 30.55 0.17 -2.10 16
15 C -0.10 -2.86 2.63 -9.90 -0.03 -2.89 16
16 H 0.08 2.42 8.13 -2.39 -0.02 2.40 16
17 C -0.12 -4.02 6.58 31.80 0.21 -3.81 16
18 C 0.18 8.66 5.44 86.85 0.47 9.13 16
19 N -0.61 -30.89 3.35 -669.21 -2.24 -33.13 16
20 C -0.24 -13.20 9.88 84.03 0.83 -12.37 16
21 H 0.08 4.22 7.41 -2.91 -0.02 4.20 16
22 C -0.06 -3.42 5.49 84.86 0.47 -2.95 16
23 N -0.95 -56.73 10.43 21.65 0.23 -56.50 16
24 Si 0.97 46.54 29.55 68.60 2.03 48.56 16
25 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16
26 H -0.29 -14.12 7.11 99.48 0.71 -13.42 16
27 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16
28 C 0.15 5.89 2.77 45.61 0.13 6.01 16
29 H 0.01 0.40 7.90 -2.39 -0.02 0.39 16
30 C 0.13 4.80 5.69 85.75 0.49 5.29 16
31 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16
32 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16
33 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16
34 H 0.06 0.84 6.46 -2.39 -0.02 0.82 16
35 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16
36 H 0.12 1.13 8.14 -2.39 -0.02 1.11 16
37 H 0.09 1.53 8.11 -2.39 -0.02 1.51 16
38 H 0.09 1.67 8.14 -2.39 -0.02 1.66 16
39 H 0.10 1.55 8.14 -2.39 -0.02 1.54 16
40 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16
41 H 0.09 1.64 6.16 -2.38 -0.01 1.62 16
42 H 0.09 1.49 7.03 -2.39 -0.02 1.47 16
43 H 0.07 1.46 7.97 -2.39 -0.02 1.44 16
44 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16
45 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16
46 H 0.07 2.16 8.13 -2.39 -0.02 2.14 16
47 H 0.02 1.25 7.21 -2.39 -0.02 1.24 16
48 H 0.00 -0.08 7.76 -2.39 -0.02 -0.10 16
49 H 0.25 14.37 8.31 -92.71 -0.77 13.60 16
50 H 0.06 2.64 6.76 -2.39 -0.02 2.62 16
51 H 0.07 2.71 8.14 -2.39 -0.02 2.69 16
Total: -1.00 -73.56 401.89 4.83 -68.73
By element:
Atomic # 1 Polarization: 9.38 SS G_CDS: 0.92 Total: 10.30 kcal
Atomic # 6 Polarization: 4.84 SS G_CDS: 6.13 Total: 10.97 kcal
Atomic # 7 Polarization: -113.06 SS G_CDS: -5.03 Total: -118.09 kcal
Atomic # 8 Polarization: -21.26 SS G_CDS: 0.79 Total: -20.47 kcal
Atomic # 14 Polarization: 46.54 SS G_CDS: 2.03 Total: 48.56 kcal
Total: -73.56 4.83 -68.73 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001042054787.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 94.570 kcal
(2) G-P(sol) polarization free energy of solvation -73.561 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.009 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.833 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.728 kcal
(6) G-S(sol) free energy of system = (1) + (5) 25.842 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.06 seconds