Wall clock time and date at job start Wed Apr 1 2020 05:06:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47060 * 2 1 4 4 C 1.50706 * 109.46735 * 180.02562 * 3 2 1 5 5 O 1.33488 * 126.82532 * 269.68067 * 4 3 2 6 6 N 1.20664 * 113.15580 * 179.77994 * 5 4 3 7 7 C 1.30010 * 112.29781 * 0.50809 * 6 5 4 8 8 C 1.50700 * 127.33045 * 179.73341 * 7 6 5 9 9 C 1.37349 * 126.83170 * 89.99848 * 4 3 2 10 10 C 1.47405 * 128.56791 * 0.02562 * 9 4 3 11 11 O 1.21606 * 120.00010 * 89.99350 * 10 9 4 12 12 N 1.34777 * 119.99943 * 270.00245 * 10 9 4 13 13 C 1.47153 * 121.21578 * 359.97438 * 12 10 9 14 14 C 1.52832 * 107.98037 * 237.29324 * 13 12 10 15 15 C 1.53098 * 110.58109 * 302.65731 * 14 13 12 16 16 H 1.08996 * 112.49293 * 289.44069 * 15 14 13 17 17 C 1.56024 * 106.38865 * 164.56194 * 15 14 13 18 18 C 1.54501 * 102.61284 * 281.62336 * 17 15 14 19 19 N 1.47430 * 107.15034 * 337.15410 * 18 17 15 20 20 C 1.36939 * 126.06461 * 178.37383 * 19 18 17 21 21 H 1.07997 * 120.00465 * 180.02562 * 20 19 18 22 22 C 1.38819 * 119.99837 * 0.02562 * 20 19 18 23 23 N 1.31621 * 119.99749 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00051 * 179.97438 * 22 20 19 25 25 H 1.48495 * 109.46630 * 60.00314 * 24 22 20 26 26 H 1.48501 * 109.46990 * 180.02562 * 24 22 20 27 27 H 1.48493 * 109.47174 * 300.00065 * 24 22 20 28 28 C 1.46465 * 107.87828 * 358.37749 * 19 18 17 29 29 H 1.08998 * 108.42550 * 270.09913 * 28 19 18 30 30 C 1.46756 * 121.21861 * 179.71540 * 12 10 9 31 31 H 1.09002 * 109.47153 * 300.00319 * 1 2 3 32 32 H 1.08998 * 109.47533 * 59.99948 * 1 2 3 33 33 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 34 34 H 1.09002 * 109.47153 * 239.99681 * 2 1 3 35 35 H 1.09001 * 109.46832 * 119.99872 * 2 1 3 36 36 H 1.09001 * 109.47194 * 299.99650 * 3 2 1 37 37 H 1.08992 * 109.47399 * 59.99823 * 3 2 1 38 38 H 1.09004 * 109.47174 * 269.95668 * 8 7 6 39 39 H 1.08997 * 109.47668 * 29.96034 * 8 7 6 40 40 H 1.09004 * 109.46861 * 149.96124 * 8 7 6 41 41 H 1.09001 * 109.76134 * 356.92205 * 13 12 10 42 42 H 1.09008 * 109.75627 * 117.62366 * 13 12 10 43 43 H 1.08994 * 109.25419 * 62.94432 * 14 13 12 44 44 H 1.09006 * 109.25230 * 182.41270 * 14 13 12 45 45 H 1.08998 * 110.78725 * 39.90846 * 17 15 14 46 46 H 1.09007 * 110.77863 * 163.34481 * 17 15 14 47 47 H 1.09008 * 109.90283 * 217.77853 * 18 17 15 48 48 H 1.09000 * 110.05265 * 96.61957 * 18 17 15 49 49 H 0.96998 * 120.00185 * 179.97438 * 23 22 20 50 50 H 1.09002 * 109.23008 * 247.78316 * 30 12 10 51 51 H 1.09002 * 109.22786 * 7.14652 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4424 -0.0006 5 8 4.3476 1.4482 1.0675 6 7 5.5199 1.4423 0.7819 7 6 5.7144 1.4424 -0.5035 8 6 7.0360 1.4417 -1.2278 9 6 4.3699 1.4425 -1.1003 10 6 3.9977 1.4432 -2.5266 11 8 3.8445 2.4967 -3.1145 12 7 3.8271 0.2763 -3.1791 13 6 4.0059 -1.0137 -2.4941 14 6 5.0726 -1.8053 -3.2500 15 6 4.6685 -1.9897 -4.7152 16 1 3.8330 -2.6795 -4.8337 17 6 5.9566 -2.4360 -5.4742 18 6 6.7236 -1.1061 -5.6480 19 7 5.7326 -0.0180 -5.5602 20 6 5.9996 1.3232 -5.6317 21 1 5.1945 2.0389 -5.5551 22 6 7.3052 1.7629 -5.8028 23 7 8.2864 0.8906 -5.8957 24 14 7.6693 3.5924 -5.9011 25 1 7.2300 4.2525 -4.6456 26 1 9.1286 3.7975 -6.0844 27 1 6.9387 4.1814 -7.0519 28 6 4.4120 -0.6259 -5.3829 29 1 3.9781 -0.8006 -6.3674 30 6 3.4506 0.2458 -4.5972 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 -0.3635 -1.0276 0.0005 34 1 1.8933 -0.5139 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 1.6767 1.9563 -0.8900 37 1 1.6766 1.9563 0.8899 38 1 7.3549 2.4693 -1.4029 39 1 7.7822 0.9280 -0.6218 40 1 6.9267 0.9275 -2.1827 41 1 4.3311 -0.8440 -1.4677 42 1 3.0658 -1.5655 -2.4962 43 1 6.0196 -1.2679 -3.2032 44 1 5.1912 -2.7839 -2.7846 45 1 6.5341 -3.1401 -4.8753 46 1 5.7047 -2.8666 -6.4434 47 1 7.2130 -1.0845 -6.6218 48 1 7.4658 -0.9966 -4.8573 49 1 9.1987 1.1977 -6.0156 50 1 2.4405 -0.1528 -4.6920 51 1 3.4747 1.2596 -4.9969 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042054789.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:06:27 Heat of formation + Delta-G solvation = 44.520313 kcal Electronic energy + Delta-G solvation = -33764.577750 eV Core-core repulsion = 29667.661516 eV Total energy + Delta-G solvation = -4096.916234 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -44.73687 -39.94729 -38.06055 -35.80528 -34.99886 -34.32642 -32.84920 -31.85869 -31.15482 -29.28856 -28.45754 -28.42373 -27.22694 -25.03593 -24.49944 -23.05232 -22.62819 -22.03437 -20.36338 -20.00097 -19.51498 -18.46083 -17.61417 -17.28844 -16.57918 -16.31255 -15.57748 -15.47114 -14.93276 -14.69207 -14.28346 -14.21527 -13.96720 -13.67996 -13.57557 -13.09625 -13.02673 -12.92315 -12.80277 -12.71622 -12.53369 -12.38773 -12.01132 -11.72725 -11.67721 -11.59878 -11.44065 -11.28617 -11.15164 -10.92814 -10.81950 -10.77487 -10.68507 -10.14543 -9.93153 -9.89509 -9.75541 -9.69461 -9.55034 -9.51866 -9.17129 -8.53661 -8.20123 -6.78083 -5.65306 -2.97322 1.40629 2.10136 2.76388 2.99575 3.43038 3.47915 3.50999 3.56781 4.26338 4.33149 4.56866 4.68544 4.71329 4.82146 4.95415 5.03998 5.09066 5.12901 5.31384 5.37223 5.43081 5.44863 5.50780 5.51752 5.54885 5.65721 5.69230 5.75528 5.77926 5.84100 5.85138 5.89902 5.94632 5.98964 6.01012 6.02074 6.10762 6.21985 6.27297 6.38169 6.42342 6.51129 6.59627 6.70019 6.90407 7.03440 7.60835 7.62956 7.77260 7.89810 8.28899 8.36644 8.54394 9.28270 9.88927 10.53283 11.46581 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010888 B = 0.004981 C = 0.004193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2570.971550 B = 5620.200389 C = 6675.861978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.123 4.123 3 C -0.040 4.040 4 C 0.001 3.999 5 O 0.092 5.908 6 N -0.363 5.363 7 C 0.064 3.936 8 C -0.080 4.080 9 C -0.227 4.227 10 C 0.605 3.395 11 O -0.521 6.521 12 N -0.581 5.581 13 C 0.113 3.887 14 C -0.122 4.122 15 C -0.101 4.101 16 H 0.076 0.924 17 C -0.143 4.143 18 C 0.179 3.821 19 N -0.587 5.587 20 C -0.214 4.214 21 H 0.080 0.920 22 C -0.004 4.004 23 N -0.924 5.924 24 Si 0.900 3.100 25 H -0.284 1.284 26 H -0.292 1.292 27 H -0.286 1.286 28 C 0.154 3.846 29 H 0.027 0.973 30 C 0.113 3.887 31 H 0.056 0.944 32 H 0.057 0.943 33 H 0.059 0.941 34 H 0.070 0.930 35 H 0.069 0.931 36 H 0.097 0.903 37 H 0.092 0.908 38 H 0.084 0.916 39 H 0.077 0.923 40 H 0.098 0.902 41 H 0.072 0.928 42 H 0.065 0.935 43 H 0.081 0.919 44 H 0.061 0.939 45 H 0.058 0.942 46 H 0.054 0.946 47 H 0.041 0.959 48 H 0.045 0.955 49 H 0.250 0.750 50 H 0.057 0.943 51 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.855 -7.331 11.249 18.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.161 4.161 3 C -0.078 4.078 4 C -0.062 4.062 5 O 0.031 5.969 6 N -0.070 5.070 7 C -0.098 4.098 8 C -0.138 4.138 9 C -0.234 4.234 10 C 0.390 3.610 11 O -0.397 6.397 12 N -0.314 5.314 13 C -0.010 4.010 14 C -0.160 4.160 15 C -0.120 4.120 16 H 0.094 0.906 17 C -0.182 4.182 18 C 0.054 3.946 19 N -0.313 5.313 20 C -0.342 4.342 21 H 0.098 0.902 22 C -0.200 4.200 23 N -0.573 5.573 24 Si 0.731 3.269 25 H -0.210 1.210 26 H -0.218 1.218 27 H -0.213 1.213 28 C 0.046 3.954 29 H 0.045 0.955 30 C -0.010 4.010 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.089 0.911 35 H 0.088 0.912 36 H 0.116 0.884 37 H 0.110 0.890 38 H 0.102 0.898 39 H 0.096 0.904 40 H 0.116 0.884 41 H 0.091 0.909 42 H 0.083 0.917 43 H 0.099 0.901 44 H 0.079 0.921 45 H 0.077 0.923 46 H 0.073 0.927 47 H 0.059 0.941 48 H 0.063 0.937 49 H 0.060 0.940 50 H 0.076 0.924 51 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -11.926 -6.597 11.945 18.123 hybrid contribution 0.228 0.973 -0.808 1.285 sum -11.698 -5.624 11.137 17.103 Atomic orbital electron populations 1.21744 0.94728 1.02149 1.02155 1.21580 0.96495 0.94804 1.03203 1.20291 0.83235 0.99255 1.05057 1.24506 0.95491 1.00859 0.85346 1.84489 1.11193 1.68288 1.32943 1.73596 0.95715 1.20974 1.16754 1.24872 0.96467 0.99779 0.88642 1.20287 0.89019 1.04216 1.00236 1.22021 0.92930 1.13025 0.95443 1.16703 0.76923 0.83775 0.83594 1.90811 1.50645 1.30858 1.67356 1.47689 1.67865 1.04839 1.10972 1.21641 0.98904 0.84335 0.96090 1.21834 0.99854 0.99235 0.95097 1.22365 0.97643 0.97413 0.94617 0.90618 1.23154 0.96533 0.99725 0.98753 1.21214 0.90316 0.82432 1.00614 1.44261 1.00056 1.02086 1.84878 1.18974 0.92650 0.80712 1.41882 0.90206 1.24653 0.95684 0.97151 1.02501 1.69943 0.99024 1.31353 1.56935 0.86353 0.76654 0.85614 0.78257 1.21013 1.21837 1.21278 1.20774 0.88693 0.90809 0.95148 0.95543 1.21583 0.96304 1.03553 0.79540 0.92465 0.92350 0.92216 0.91102 0.91206 0.88442 0.88965 0.89760 0.90420 0.88380 0.90943 0.91703 0.90076 0.92054 0.92318 0.92715 0.94130 0.93658 0.93987 0.92449 0.88557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.91 37.16 0.37 -0.63 16 2 C -0.12 -1.01 5.92 -26.73 -0.16 -1.17 16 3 C -0.04 -0.40 5.66 -27.88 -0.16 -0.55 16 4 C 0.00 0.02 6.80 -34.63 -0.24 -0.22 16 5 O 0.09 1.34 11.06 18.66 0.21 1.54 16 6 N -0.36 -5.94 12.01 34.78 0.42 -5.53 16 7 C 0.06 1.10 7.59 -79.77 -0.61 0.50 16 8 C -0.08 -1.38 10.49 36.01 0.38 -1.00 16 9 C -0.23 -3.80 4.23 -102.89 -0.44 -4.24 16 10 C 0.60 11.44 7.50 -12.53 -0.09 11.34 16 11 O -0.52 -11.95 16.56 5.27 0.09 -11.87 16 12 N -0.58 -9.74 2.96 -175.11 -0.52 -10.26 16 13 C 0.11 1.54 5.60 -3.77 -0.02 1.52 16 14 C -0.12 -1.81 5.04 -26.77 -0.13 -1.94 16 15 C -0.10 -1.56 3.68 -88.43 -0.33 -1.89 16 16 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 17 C -0.14 -2.47 6.33 -24.33 -0.15 -2.62 16 18 C 0.18 4.07 4.61 -2.75 -0.01 4.06 16 19 N -0.59 -13.85 3.20 -164.17 -0.53 -14.37 16 20 C -0.21 -5.76 9.71 -15.06 -0.15 -5.91 16 21 H 0.08 2.23 6.53 -52.49 -0.34 1.88 16 22 C 0.00 -0.12 5.49 -17.43 -0.10 -0.21 16 23 N -0.92 -26.46 10.38 55.49 0.58 -25.89 16 24 Si 0.90 22.95 29.55 -169.99 -5.02 17.93 16 25 H -0.28 -7.37 7.11 56.52 0.40 -6.97 16 26 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 27 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 28 C 0.15 2.90 2.97 -68.08 -0.20 2.70 16 29 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 30 C 0.11 1.99 5.71 -4.56 -0.03 1.96 16 31 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.07 0.64 6.96 -51.93 -0.36 0.28 16 35 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.10 1.03 8.11 -51.93 -0.42 0.61 16 37 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.08 1.48 8.14 -51.93 -0.42 1.05 16 39 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 40 H 0.10 1.93 8.14 -51.93 -0.42 1.51 16 41 H 0.07 0.98 6.39 -51.93 -0.33 0.64 16 42 H 0.06 0.71 7.75 -51.92 -0.40 0.31 16 43 H 0.08 1.50 6.86 -51.93 -0.36 1.14 16 44 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 45 H 0.06 0.92 7.97 -51.93 -0.41 0.51 16 46 H 0.05 0.90 8.14 -51.92 -0.42 0.47 16 47 H 0.04 1.05 7.57 -51.92 -0.39 0.66 16 48 H 0.05 1.15 7.04 -51.93 -0.37 0.78 16 49 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 50 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 51 H 0.10 2.00 5.56 -51.93 -0.29 1.71 16 LS Contribution 399.19 15.07 6.02 6.02 Total: -1.00 -31.77 399.19 -9.13 -40.90 By element: Atomic # 1 Polarization: 8.13 SS G_CDS: -8.31 Total: -0.18 kcal Atomic # 6 Polarization: 3.76 SS G_CDS: -2.06 Total: 1.70 kcal Atomic # 7 Polarization: -55.99 SS G_CDS: -0.05 Total: -56.04 kcal Atomic # 8 Polarization: -10.62 SS G_CDS: 0.29 Total: -10.32 kcal Atomic # 14 Polarization: 22.95 SS G_CDS: -5.02 Total: 17.93 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -31.77 -9.13 -40.90 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042054789.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.419 kcal (2) G-P(sol) polarization free energy of solvation -31.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.899 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds