Wall clock time and date at job start Wed Apr 1 2020 05:06:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47060 * 2 1 4 4 C 1.50706 * 109.46735 * 180.02562 * 3 2 1 5 5 O 1.33488 * 126.82532 * 269.68067 * 4 3 2 6 6 N 1.20664 * 113.15580 * 179.77994 * 5 4 3 7 7 C 1.30010 * 112.29781 * 0.50809 * 6 5 4 8 8 C 1.50700 * 127.33045 * 179.73341 * 7 6 5 9 9 C 1.37349 * 126.83170 * 89.99848 * 4 3 2 10 10 C 1.47405 * 128.56791 * 0.02562 * 9 4 3 11 11 O 1.21606 * 120.00010 * 89.99350 * 10 9 4 12 12 N 1.34777 * 119.99943 * 270.00245 * 10 9 4 13 13 C 1.47153 * 121.21578 * 359.97438 * 12 10 9 14 14 C 1.52832 * 107.98037 * 237.29324 * 13 12 10 15 15 C 1.53098 * 110.58109 * 302.65731 * 14 13 12 16 16 H 1.08996 * 112.49293 * 289.44069 * 15 14 13 17 17 C 1.56024 * 106.38865 * 164.56194 * 15 14 13 18 18 C 1.54501 * 102.61284 * 281.62336 * 17 15 14 19 19 N 1.47430 * 107.15034 * 337.15410 * 18 17 15 20 20 C 1.36939 * 126.06461 * 178.37383 * 19 18 17 21 21 H 1.07997 * 120.00465 * 180.02562 * 20 19 18 22 22 C 1.38819 * 119.99837 * 0.02562 * 20 19 18 23 23 N 1.31621 * 119.99749 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00051 * 179.97438 * 22 20 19 25 25 H 1.48495 * 109.46630 * 60.00314 * 24 22 20 26 26 H 1.48501 * 109.46990 * 180.02562 * 24 22 20 27 27 H 1.48493 * 109.47174 * 300.00065 * 24 22 20 28 28 C 1.46465 * 107.87828 * 358.37749 * 19 18 17 29 29 H 1.08998 * 108.42550 * 270.09913 * 28 19 18 30 30 C 1.46756 * 121.21861 * 179.71540 * 12 10 9 31 31 H 1.09002 * 109.47153 * 300.00319 * 1 2 3 32 32 H 1.08998 * 109.47533 * 59.99948 * 1 2 3 33 33 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 34 34 H 1.09002 * 109.47153 * 239.99681 * 2 1 3 35 35 H 1.09001 * 109.46832 * 119.99872 * 2 1 3 36 36 H 1.09001 * 109.47194 * 299.99650 * 3 2 1 37 37 H 1.08992 * 109.47399 * 59.99823 * 3 2 1 38 38 H 1.09004 * 109.47174 * 269.95668 * 8 7 6 39 39 H 1.08997 * 109.47668 * 29.96034 * 8 7 6 40 40 H 1.09004 * 109.46861 * 149.96124 * 8 7 6 41 41 H 1.09001 * 109.76134 * 356.92205 * 13 12 10 42 42 H 1.09008 * 109.75627 * 117.62366 * 13 12 10 43 43 H 1.08994 * 109.25419 * 62.94432 * 14 13 12 44 44 H 1.09006 * 109.25230 * 182.41270 * 14 13 12 45 45 H 1.08998 * 110.78725 * 39.90846 * 17 15 14 46 46 H 1.09007 * 110.77863 * 163.34481 * 17 15 14 47 47 H 1.09008 * 109.90283 * 217.77853 * 18 17 15 48 48 H 1.09000 * 110.05265 * 96.61957 * 18 17 15 49 49 H 0.96998 * 120.00185 * 179.97438 * 23 22 20 50 50 H 1.09002 * 109.23008 * 247.78316 * 30 12 10 51 51 H 1.09002 * 109.22786 * 7.14652 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4424 -0.0006 5 8 4.3476 1.4482 1.0675 6 7 5.5199 1.4423 0.7819 7 6 5.7144 1.4424 -0.5035 8 6 7.0360 1.4417 -1.2278 9 6 4.3699 1.4425 -1.1003 10 6 3.9977 1.4432 -2.5266 11 8 3.8445 2.4967 -3.1145 12 7 3.8271 0.2763 -3.1791 13 6 4.0059 -1.0137 -2.4941 14 6 5.0726 -1.8053 -3.2500 15 6 4.6685 -1.9897 -4.7152 16 1 3.8330 -2.6795 -4.8337 17 6 5.9566 -2.4360 -5.4742 18 6 6.7236 -1.1061 -5.6480 19 7 5.7326 -0.0180 -5.5602 20 6 5.9996 1.3232 -5.6317 21 1 5.1945 2.0389 -5.5551 22 6 7.3052 1.7629 -5.8028 23 7 8.2864 0.8906 -5.8957 24 14 7.6693 3.5924 -5.9011 25 1 7.2300 4.2525 -4.6456 26 1 9.1286 3.7975 -6.0844 27 1 6.9387 4.1814 -7.0519 28 6 4.4120 -0.6259 -5.3829 29 1 3.9781 -0.8006 -6.3674 30 6 3.4506 0.2458 -4.5972 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 -0.3635 -1.0276 0.0005 34 1 1.8933 -0.5139 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 1.6767 1.9563 -0.8900 37 1 1.6766 1.9563 0.8899 38 1 7.3549 2.4693 -1.4029 39 1 7.7822 0.9280 -0.6218 40 1 6.9267 0.9275 -2.1827 41 1 4.3311 -0.8440 -1.4677 42 1 3.0658 -1.5655 -2.4962 43 1 6.0196 -1.2679 -3.2032 44 1 5.1912 -2.7839 -2.7846 45 1 6.5341 -3.1401 -4.8753 46 1 5.7047 -2.8666 -6.4434 47 1 7.2130 -1.0845 -6.6218 48 1 7.4658 -0.9966 -4.8573 49 1 9.1987 1.1977 -6.0156 50 1 2.4405 -0.1528 -4.6920 51 1 3.4747 1.2596 -4.9969 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042054789.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:06:26 Heat of formation + Delta-G solvation = 26.053412 kcal Electronic energy + Delta-G solvation = -33765.378535 eV Core-core repulsion = 29667.661516 eV Total energy + Delta-G solvation = -4097.717019 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -46.00386 -41.37168 -39.59176 -36.71468 -36.44784 -35.64501 -34.64137 -32.97080 -32.70254 -30.80634 -30.07823 -29.83619 -28.10318 -26.55260 -26.23964 -24.44354 -23.95126 -22.75634 -21.74692 -21.63578 -20.78408 -19.89021 -18.88637 -18.59937 -18.42191 -17.60954 -17.06189 -16.65598 -16.36590 -16.11245 -15.79085 -15.56190 -15.41431 -15.10714 -14.53431 -14.48465 -14.39143 -14.25061 -14.10609 -14.05897 -13.79179 -13.71002 -13.24502 -13.19642 -13.10186 -12.98509 -12.67185 -12.58904 -12.51073 -12.36827 -12.21505 -12.16391 -12.07796 -11.65478 -11.53630 -11.41847 -11.32257 -11.19736 -11.12163 -10.88603 -10.64642 -10.38443 -9.57568 -8.77326 -7.81410 -5.10386 0.25075 0.76372 1.35602 1.36354 1.37974 1.44989 1.79372 2.16785 2.48311 2.96514 3.18364 3.37315 3.49122 3.68251 3.80298 3.87953 3.92172 4.05791 4.06822 4.12994 4.17788 4.27270 4.39097 4.39932 4.47164 4.48469 4.55805 4.56415 4.67296 4.69706 4.74754 4.76641 4.80328 4.84914 4.88288 4.98170 4.99040 5.01604 5.14128 5.18723 5.26286 5.31751 5.31893 5.49945 5.56297 5.62612 5.67714 5.75355 5.85595 6.25806 6.41522 7.12741 7.13985 7.18241 7.86307 8.49271 9.28711 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010888 B = 0.004981 C = 0.004193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2570.971550 B = 5620.200389 C = 6675.861978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.118 4.118 3 C -0.042 4.042 4 C 0.034 3.966 5 O 0.105 5.895 6 N -0.367 5.367 7 C 0.046 3.954 8 C -0.071 4.071 9 C -0.257 4.257 10 C 0.602 3.398 11 O -0.576 6.576 12 N -0.577 5.577 13 C 0.114 3.886 14 C -0.119 4.119 15 C -0.082 4.082 16 H 0.126 0.874 17 C -0.130 4.130 18 C 0.187 3.813 19 N -0.603 5.603 20 C -0.200 4.200 21 H 0.065 0.935 22 C -0.054 4.054 23 N -0.944 5.944 24 Si 0.943 3.057 25 H -0.295 1.295 26 H -0.290 1.290 27 H -0.283 1.283 28 C 0.142 3.858 29 H 0.031 0.969 30 C 0.116 3.884 31 H 0.066 0.934 32 H 0.053 0.947 33 H 0.069 0.931 34 H 0.064 0.936 35 H 0.079 0.921 36 H 0.090 0.910 37 H 0.119 0.881 38 H 0.072 0.928 39 H 0.097 0.903 40 H 0.065 0.935 41 H 0.074 0.926 42 H 0.110 0.890 43 H 0.034 0.966 44 H 0.099 0.901 45 H 0.079 0.921 46 H 0.069 0.931 47 H -0.003 1.003 48 H 0.008 0.992 49 H 0.242 0.758 50 H 0.104 0.896 51 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.139 -10.060 13.217 23.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.156 4.156 3 C -0.080 4.080 4 C -0.030 4.030 5 O 0.043 5.957 6 N -0.074 5.074 7 C -0.115 4.115 8 C -0.128 4.128 9 C -0.264 4.264 10 C 0.389 3.611 11 O -0.456 6.456 12 N -0.307 5.307 13 C -0.008 4.008 14 C -0.157 4.157 15 C -0.101 4.101 16 H 0.144 0.856 17 C -0.168 4.168 18 C 0.062 3.938 19 N -0.328 5.328 20 C -0.330 4.330 21 H 0.083 0.917 22 C -0.247 4.247 23 N -0.595 5.595 24 Si 0.774 3.226 25 H -0.223 1.223 26 H -0.216 1.216 27 H -0.209 1.209 28 C 0.035 3.965 29 H 0.049 0.951 30 C -0.007 4.007 31 H 0.085 0.915 32 H 0.072 0.928 33 H 0.088 0.912 34 H 0.083 0.917 35 H 0.098 0.902 36 H 0.109 0.891 37 H 0.138 0.862 38 H 0.091 0.909 39 H 0.116 0.884 40 H 0.083 0.917 41 H 0.092 0.908 42 H 0.128 0.872 43 H 0.052 0.948 44 H 0.117 0.883 45 H 0.098 0.902 46 H 0.087 0.913 47 H 0.016 0.984 48 H 0.026 0.974 49 H 0.051 0.949 50 H 0.122 0.878 51 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -15.229 -9.381 13.916 22.662 hybrid contribution 1.151 1.810 -1.391 2.557 sum -14.078 -7.571 12.525 20.307 Atomic orbital electron populations 1.21724 0.93326 1.02927 1.02473 1.21571 0.97557 0.93048 1.03391 1.20586 0.80189 1.01121 1.06062 1.25111 0.96722 0.97371 0.83819 1.84478 1.10748 1.67532 1.32957 1.73575 0.96639 1.21091 1.16051 1.24804 0.96500 1.01035 0.89171 1.20086 0.90338 1.03254 0.99131 1.21847 0.93379 1.16069 0.95111 1.16996 0.76133 0.83585 0.84356 1.90773 1.53273 1.32847 1.68737 1.47810 1.66560 1.05652 1.10717 1.21906 1.00636 0.82667 0.95565 1.21807 0.97983 1.00684 0.95275 1.22415 0.98041 0.95526 0.94108 0.85587 1.23015 0.96908 0.96466 1.00391 1.20959 0.90433 0.85556 0.96859 1.44424 1.02636 1.01213 1.84554 1.18984 0.91956 0.82552 1.39483 0.91726 1.25141 0.96037 0.99485 1.04049 1.70112 0.98648 1.31956 1.58791 0.85675 0.76392 0.82995 0.77544 1.22283 1.21608 1.20935 1.21107 0.86519 0.92803 0.96095 0.95115 1.21520 0.98224 1.01251 0.79713 0.91470 0.92803 0.91204 0.91702 0.90230 0.89138 0.86237 0.90925 0.88416 0.91651 0.90771 0.87167 0.94752 0.88312 0.90237 0.91278 0.98426 0.97355 0.94888 0.87846 0.92647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 9.91 71.98 0.71 -0.65 16 2 C -0.12 -1.46 5.92 30.59 0.18 -1.28 16 3 C -0.04 -0.69 5.66 29.85 0.17 -0.53 16 4 C 0.03 0.85 6.80 25.48 0.17 1.03 16 5 O 0.11 2.85 11.06 77.03 0.85 3.70 16 6 N -0.37 -11.70 12.01 -44.79 -0.54 -12.24 16 7 C 0.05 1.61 7.59 45.16 0.34 1.95 16 8 C -0.07 -2.58 10.49 71.24 0.75 -1.83 16 9 C -0.26 -8.54 4.23 -18.75 -0.08 -8.62 16 10 C 0.60 23.12 7.50 86.66 0.65 23.77 16 11 O -0.58 -27.70 16.56 -4.05 -0.07 -27.77 16 12 N -0.58 -18.67 2.96 -826.18 -2.45 -21.12 16 13 C 0.11 2.70 5.60 86.20 0.48 3.19 16 14 C -0.12 -3.16 5.04 30.57 0.15 -3.01 16 15 C -0.08 -2.22 3.68 -9.37 -0.03 -2.25 16 16 H 0.13 2.36 8.14 -2.39 -0.02 2.34 16 17 C -0.13 -4.18 6.33 32.15 0.20 -3.98 16 18 C 0.19 8.80 4.61 86.71 0.40 9.20 16 19 N -0.60 -29.31 3.20 -673.33 -2.15 -31.46 16 20 C -0.20 -11.33 9.71 84.03 0.82 -10.51 16 21 H 0.06 3.83 6.53 -2.91 -0.02 3.81 16 22 C -0.05 -3.19 5.49 84.86 0.47 -2.72 16 23 N -0.94 -57.30 10.38 21.65 0.22 -57.08 16 24 Si 0.94 49.67 29.55 68.60 2.03 51.70 16 25 H -0.30 -15.97 7.11 99.48 0.71 -15.26 16 26 H -0.29 -15.04 7.11 99.48 0.71 -14.34 16 27 H -0.28 -14.57 7.11 99.48 0.71 -13.86 16 28 C 0.14 5.14 2.97 44.91 0.13 5.27 16 29 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 30 C 0.12 3.92 5.71 85.90 0.49 4.41 16 31 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 33 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 34 H 0.06 0.89 6.96 -2.39 -0.02 0.87 16 35 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.09 1.73 8.11 -2.39 -0.02 1.71 16 37 H 0.12 1.39 8.14 -2.39 -0.02 1.37 16 38 H 0.07 2.75 8.14 -2.38 -0.02 2.73 16 39 H 0.10 3.04 8.14 -2.39 -0.02 3.02 16 40 H 0.06 2.80 8.14 -2.38 -0.02 2.78 16 41 H 0.07 1.79 6.39 -2.39 -0.02 1.78 16 42 H 0.11 1.73 7.75 -2.38 -0.02 1.71 16 43 H 0.03 1.25 6.86 -2.39 -0.02 1.24 16 44 H 0.10 1.94 8.14 -2.38 -0.02 1.92 16 45 H 0.08 2.26 7.97 -2.39 -0.02 2.25 16 46 H 0.07 2.06 8.14 -2.38 -0.02 2.04 16 47 H 0.00 -0.14 7.57 -2.38 -0.02 -0.16 16 48 H 0.01 0.44 7.04 -2.39 -0.02 0.43 16 49 H 0.24 14.54 8.31 -92.71 -0.77 13.77 16 50 H 0.10 2.57 8.14 -2.39 -0.02 2.55 16 51 H 0.05 2.36 5.56 -2.39 -0.01 2.35 16 Total: -1.00 -77.12 399.19 4.83 -72.29 By element: Atomic # 1 Polarization: 7.61 SS G_CDS: 0.93 Total: 8.53 kcal Atomic # 6 Polarization: 7.44 SS G_CDS: 6.01 Total: 13.45 kcal Atomic # 7 Polarization: -116.99 SS G_CDS: -4.91 Total: -121.90 kcal Atomic # 8 Polarization: -24.86 SS G_CDS: 0.78 Total: -24.07 kcal Atomic # 14 Polarization: 49.67 SS G_CDS: 2.03 Total: 51.70 kcal Total: -77.12 4.83 -72.29 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042054789.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.343 kcal (2) G-P(sol) polarization free energy of solvation -77.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.290 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds