Wall clock time and date at job start Wed Apr 1 2020 05:31:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47204 * 2 1 4 4 C 1.53004 * 109.46999 * 239.99974 * 2 1 3 5 5 C 1.50695 * 109.46931 * 120.00165 * 2 1 3 6 6 N 1.29942 * 125.38248 * 60.00604 * 5 2 1 7 7 C 1.36064 * 108.47970 * 179.97438 * 6 5 2 8 8 C 1.47419 * 126.45115 * 179.97438 * 7 6 5 9 9 O 1.21605 * 120.00023 * 173.43283 * 8 7 6 10 10 N 1.34779 * 119.99513 * 353.43298 * 8 7 6 11 11 C 1.47152 * 121.21815 * 353.02143 * 10 8 7 12 12 C 1.52839 * 107.97721 * 237.28525 * 11 10 8 13 13 C 1.53101 * 110.57219 * 302.65111 * 12 11 10 14 14 H 1.08994 * 112.49374 * 289.44464 * 13 12 11 15 15 C 1.56026 * 107.06253 * 164.90824 * 13 12 11 16 16 C 1.54517 * 102.70652 * 281.16686 * 15 13 12 17 17 N 1.47425 * 107.14165 * 337.53970 * 16 15 13 18 18 C 1.36940 * 126.06608 * 178.22848 * 17 16 15 19 19 H 1.07993 * 120.00067 * 179.69190 * 18 17 16 20 20 C 1.38809 * 119.99661 * 359.69181 * 18 17 16 21 21 N 1.31625 * 119.99846 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 120.00195 * 180.27470 * 20 18 17 23 23 H 1.48496 * 109.47177 * 269.72703 * 22 20 18 24 24 H 1.48510 * 109.46822 * 29.72570 * 22 20 18 25 25 H 1.48493 * 109.47251 * 149.72237 * 22 20 18 26 26 C 1.46471 * 107.87768 * 357.96479 * 17 16 15 27 27 H 1.09001 * 108.42878 * 270.37408 * 26 17 16 28 28 C 1.44090 * 121.21786 * 173.62625 * 10 8 7 29 29 C 1.36094 * 107.10286 * 0.25752 * 7 6 5 30 30 O 1.34051 * 125.37790 * 239.95387 * 5 2 1 31 31 H 1.08999 * 109.47034 * 299.99722 * 1 2 3 32 32 H 1.08994 * 109.46979 * 60.00424 * 1 2 3 33 33 H 1.09004 * 109.47292 * 180.02562 * 1 2 3 34 34 H 1.08998 * 109.46910 * 180.02562 * 3 2 1 35 35 H 1.09006 * 109.46854 * 300.00058 * 3 2 1 36 36 H 1.08999 * 109.46898 * 60.00194 * 3 2 1 37 37 H 1.09004 * 109.47063 * 300.00097 * 4 2 1 38 38 H 1.09002 * 109.46780 * 59.99919 * 4 2 1 39 39 H 1.08998 * 109.47249 * 180.02562 * 4 2 1 40 40 H 1.08995 * 109.76007 * 117.66307 * 11 10 8 41 41 H 1.08996 * 109.75877 * 356.90178 * 11 10 8 42 42 H 1.09001 * 109.25349 * 182.37121 * 12 11 10 43 43 H 1.08992 * 109.25553 * 62.93296 * 12 11 10 44 44 H 1.08997 * 110.78509 * 39.67780 * 15 13 12 45 45 H 1.09001 * 110.78415 * 162.92109 * 15 13 12 46 46 H 1.09004 * 110.02921 * 218.09295 * 16 15 13 47 47 H 1.09002 * 109.78474 * 96.85205 * 16 15 13 48 48 H 0.97006 * 119.99601 * 179.97438 * 21 20 18 49 49 H 1.09007 * 108.85036 * 6.58191 * 28 10 8 50 50 H 1.08998 * 108.06998 * 248.11184 * 28 10 8 51 51 H 1.08002 * 126.52764 * 179.74559 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 2.0323 -0.7104 1.2304 6 7 1.7838 -1.9480 1.5388 7 6 2.4046 -2.2322 2.7157 8 6 2.3838 -3.5230 3.4276 9 8 3.0779 -3.6853 4.4128 10 7 1.5955 -4.5232 2.9863 11 6 0.6342 -4.3108 1.8927 12 6 -0.7567 -4.6774 2.4094 13 6 -0.7792 -6.1224 2.9148 14 1 -0.7046 -6.8485 2.1054 15 6 -2.0783 -6.2908 3.7624 16 6 -1.6934 -5.6361 5.1081 17 7 -0.2220 -5.6583 5.1969 18 6 0.5318 -5.1442 6.2180 19 1 1.6087 -5.2190 6.1849 20 6 -0.0882 -4.5268 7.2956 21 7 -1.4006 -4.4352 7.3357 22 14 0.9403 -3.8186 8.6848 23 1 1.1484 -4.8570 9.7258 24 1 2.2558 -3.3802 8.1530 25 1 0.2346 -2.6555 9.2800 26 6 0.2905 -6.3335 4.0024 27 1 0.3612 -7.4006 4.2134 28 6 1.6542 -5.8363 3.5768 29 6 3.0431 -1.0988 3.1153 30 8 2.8069 -0.1658 2.1792 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5137 -0.8900 33 1 -0.3634 -1.0277 0.0005 34 1 3.1300 1.4424 -0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6767 1.9562 0.8900 37 1 1.6766 -1.7490 -1.2493 38 1 1.6766 -0.2074 -2.1392 39 1 3.1300 -0.7217 -1.2491 40 1 0.8924 -4.9471 1.0462 41 1 0.6496 -3.2648 1.5865 42 1 -1.4806 -4.5677 1.6019 43 1 -1.0252 -4.0069 3.2257 44 1 -2.9134 -5.7659 3.2987 45 1 -2.3157 -7.3456 3.9010 46 1 -2.1236 -6.2014 5.9348 47 1 -2.0512 -4.6068 5.1333 48 1 -1.8339 -4.0040 8.0889 49 1 2.3114 -5.8026 4.4458 50 1 2.0715 -6.5207 2.8383 51 1 3.6306 -0.9744 4.0130 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042061017.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:31:19 Heat of formation + Delta-G solvation = 22.079623 kcal Electronic energy + Delta-G solvation = -33048.102236 eV Core-core repulsion = 28950.212900 eV Total energy + Delta-G solvation = -4097.889336 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -43.47067 -39.87057 -37.95102 -37.23362 -35.17026 -34.56254 -32.76217 -31.06759 -29.94227 -28.98770 -28.30084 -27.67027 -27.60130 -24.95179 -24.41015 -23.43659 -22.64973 -22.33774 -20.55314 -19.88255 -19.21259 -18.32089 -17.31219 -16.82937 -16.47524 -16.45498 -15.56535 -15.24741 -14.76600 -14.63113 -14.45736 -14.29340 -14.11059 -13.84097 -13.61656 -13.29607 -12.97092 -12.85661 -12.65903 -12.57370 -12.52909 -11.99720 -11.92445 -11.90040 -11.66751 -11.50183 -11.38292 -11.30673 -11.24143 -11.05615 -10.78456 -10.74913 -10.69024 -10.26306 -10.00425 -9.80863 -9.74723 -9.57350 -9.43572 -9.18316 -8.95386 -8.45886 -7.98657 -6.68721 -5.56826 -2.88287 1.23769 2.08670 2.51804 3.37635 3.50804 3.55802 3.63209 3.65910 3.83208 4.43968 4.52548 4.59938 4.64623 4.87897 4.97787 5.22591 5.25016 5.30228 5.34045 5.39165 5.43422 5.48982 5.51816 5.54932 5.63691 5.67094 5.67644 5.71685 5.73811 5.85200 5.88122 5.93089 5.95738 6.00130 6.08655 6.11502 6.24357 6.36111 6.38438 6.52694 6.62601 6.65814 6.72794 6.83512 7.08067 7.27218 7.50908 7.70061 7.72400 7.96643 7.98965 8.37935 8.66484 9.37045 9.97868 10.62684 11.55673 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011719 B = 0.004075 C = 0.003541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2388.798246 B = 6869.239078 C = 7904.950709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.033 3.967 3 C -0.147 4.147 4 C -0.139 4.139 5 C 0.199 3.801 6 N -0.450 5.450 7 C -0.053 4.053 8 C 0.600 3.400 9 O -0.529 6.529 10 N -0.570 5.570 11 C 0.081 3.919 12 C -0.120 4.120 13 C -0.103 4.103 14 H 0.073 0.927 15 C -0.144 4.144 16 C 0.179 3.821 17 N -0.589 5.589 18 C -0.209 4.209 19 H 0.083 0.917 20 C -0.010 4.010 21 N -0.927 5.927 22 Si 0.902 3.098 23 H -0.291 1.291 24 H -0.277 1.277 25 H -0.294 1.294 26 C 0.155 3.845 27 H 0.027 0.973 28 C 0.110 3.890 29 C 0.003 3.997 30 O -0.195 6.195 31 H 0.061 0.939 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.063 0.937 35 H 0.071 0.929 36 H 0.064 0.936 37 H 0.071 0.929 38 H 0.071 0.929 39 H 0.059 0.941 40 H 0.055 0.945 41 H 0.132 0.868 42 H 0.058 0.942 43 H 0.075 0.925 44 H 0.057 0.943 45 H 0.053 0.947 46 H 0.040 0.960 47 H 0.044 0.956 48 H 0.248 0.752 49 H 0.094 0.906 50 H 0.051 0.949 51 H 0.230 0.770 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.134 8.189 -19.881 21.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.031 3.969 3 C -0.205 4.205 4 C -0.197 4.197 5 C -0.010 4.010 6 N -0.180 5.180 7 C -0.173 4.173 8 C 0.387 3.613 9 O -0.405 6.405 10 N -0.300 5.300 11 C -0.041 4.041 12 C -0.158 4.158 13 C -0.122 4.122 14 H 0.091 0.909 15 C -0.182 4.182 16 C 0.055 3.945 17 N -0.314 5.314 18 C -0.338 4.338 19 H 0.100 0.900 20 C -0.205 4.205 21 N -0.576 5.576 22 Si 0.733 3.267 23 H -0.218 1.218 24 H -0.203 1.203 25 H -0.220 1.220 26 C 0.047 3.953 27 H 0.045 0.955 28 C -0.014 4.014 29 C -0.070 4.070 30 O -0.081 6.081 31 H 0.080 0.920 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.082 0.918 35 H 0.090 0.910 36 H 0.083 0.917 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.078 0.922 40 H 0.074 0.926 41 H 0.149 0.851 42 H 0.077 0.923 43 H 0.094 0.906 44 H 0.076 0.924 45 H 0.072 0.928 46 H 0.058 0.942 47 H 0.062 0.938 48 H 0.058 0.942 49 H 0.112 0.888 50 H 0.069 0.931 51 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 4.132 7.826 -19.486 21.402 hybrid contribution 0.715 0.668 1.460 1.757 sum 4.847 8.494 -18.026 20.508 Atomic orbital electron populations 1.21926 0.91445 1.03784 1.02755 1.19146 0.96599 0.94452 0.86678 1.21922 1.01850 0.93645 1.03078 1.21907 1.01455 1.01351 0.94965 1.26379 0.92869 0.89060 0.92661 1.70500 1.21445 1.12931 1.13151 1.21924 1.03173 0.97370 0.94788 1.16638 0.80705 0.81364 0.82608 1.90820 1.44013 1.80994 1.24722 1.46866 1.37482 1.10498 1.35142 1.22539 0.87854 1.05772 0.87955 1.21789 0.96003 0.97234 1.00746 1.22386 0.96972 0.96211 0.96665 0.90868 1.23152 0.96216 1.00061 0.98755 1.21199 0.83881 0.98539 0.90891 1.44299 1.01752 1.67177 1.18202 1.19078 0.90123 1.28865 0.95695 0.89965 1.24693 0.95672 1.01427 0.98706 1.69972 1.06824 1.49488 1.31314 0.86218 0.79619 0.78446 0.82388 1.21837 1.20278 1.22029 1.20697 0.91205 0.95337 0.88093 0.95534 1.20959 0.99677 0.82291 0.98507 1.25264 1.01494 0.86173 0.94082 1.84359 1.54427 1.40866 1.28402 0.92005 0.90935 0.90901 0.91822 0.90977 0.91705 0.90966 0.90972 0.92232 0.92637 0.85073 0.92302 0.90605 0.92405 0.92849 0.94214 0.93774 0.94174 0.88755 0.93089 0.75427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.13 8.46 37.16 0.31 -0.82 16 2 C 0.03 0.28 0.99 -155.66 -0.15 0.12 16 3 C -0.15 -1.02 8.01 37.16 0.30 -0.72 16 4 C -0.14 -1.01 8.46 37.16 0.31 -0.69 16 5 C 0.20 2.46 6.44 -13.08 -0.08 2.38 16 6 N -0.45 -6.62 7.83 -7.65 -0.06 -6.68 16 7 C -0.05 -0.90 6.70 -83.02 -0.56 -1.46 16 8 C 0.60 12.28 7.68 -12.52 -0.10 12.18 16 9 O -0.53 -12.43 16.31 5.27 0.09 -12.35 16 10 N -0.57 -10.99 2.93 -177.47 -0.52 -11.51 16 11 C 0.08 1.33 6.19 -3.77 -0.02 1.30 16 12 C -0.12 -2.05 5.08 -26.76 -0.14 -2.19 16 13 C -0.10 -1.81 3.63 -88.43 -0.32 -2.13 16 14 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 15 C -0.14 -2.73 6.34 -24.32 -0.15 -2.88 16 16 C 0.18 4.44 4.64 -2.74 -0.01 4.43 16 17 N -0.59 -15.14 3.20 -164.41 -0.53 -15.67 16 18 C -0.21 -6.03 9.70 -15.06 -0.15 -6.17 16 19 H 0.08 2.42 6.52 -52.49 -0.34 2.08 16 20 C -0.01 -0.29 5.49 -17.43 -0.10 -0.39 16 21 N -0.93 -28.21 10.38 55.49 0.58 -27.64 16 22 Si 0.90 23.76 29.55 -169.99 -5.02 18.73 16 23 H -0.29 -7.58 7.11 56.52 0.40 -7.18 16 24 H -0.28 -7.35 7.11 56.52 0.40 -6.95 16 25 H -0.29 -7.74 7.11 56.52 0.40 -7.34 16 26 C 0.16 3.25 3.02 -68.30 -0.21 3.05 16 27 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 28 C 0.11 2.18 5.53 -6.20 -0.03 2.15 16 29 C 0.00 0.04 11.95 29.96 0.36 0.40 16 30 O -0.19 -2.53 10.11 6.49 0.07 -2.46 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 35 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 36 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.13 2.10 4.05 -61.20 -0.25 1.85 16 42 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.08 1.61 6.98 -51.93 -0.36 1.25 16 44 H 0.06 1.00 7.99 -51.93 -0.41 0.58 16 45 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 46 H 0.04 1.09 7.59 -51.93 -0.39 0.70 16 47 H 0.04 1.22 7.10 -51.93 -0.37 0.85 16 48 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 49 H 0.09 2.14 5.44 -51.93 -0.28 1.86 16 50 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 51 H 0.23 2.80 8.06 -52.49 -0.42 2.38 16 LS Contribution 394.10 15.07 5.94 5.94 Total: -1.00 -34.30 394.10 -8.51 -42.81 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: -8.31 Total: 0.25 kcal Atomic # 6 Polarization: 9.30 SS G_CDS: -0.74 Total: 8.56 kcal Atomic # 7 Polarization: -60.96 SS G_CDS: -0.53 Total: -61.49 kcal Atomic # 8 Polarization: -14.96 SS G_CDS: 0.15 Total: -14.81 kcal Atomic # 14 Polarization: 23.76 SS G_CDS: -5.02 Total: 18.73 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -34.30 -8.51 -42.81 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042061017.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.894 kcal (2) G-P(sol) polarization free energy of solvation -34.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.815 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds