Wall clock time and date at job start Wed Apr 1 2020 05:31:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47204 * 2 1 4 4 C 1.53004 * 109.46999 * 239.99974 * 2 1 3 5 5 C 1.50695 * 109.46931 * 120.00165 * 2 1 3 6 6 N 1.29942 * 125.38248 * 60.00604 * 5 2 1 7 7 C 1.36064 * 108.47970 * 179.97438 * 6 5 2 8 8 C 1.47419 * 126.45115 * 179.97438 * 7 6 5 9 9 O 1.21605 * 120.00023 * 173.43283 * 8 7 6 10 10 N 1.34779 * 119.99513 * 353.43298 * 8 7 6 11 11 C 1.47152 * 121.21815 * 353.02143 * 10 8 7 12 12 C 1.52839 * 107.97721 * 237.28525 * 11 10 8 13 13 C 1.53101 * 110.57219 * 302.65111 * 12 11 10 14 14 H 1.08994 * 112.49374 * 289.44464 * 13 12 11 15 15 C 1.56026 * 107.06253 * 164.90824 * 13 12 11 16 16 C 1.54517 * 102.70652 * 281.16686 * 15 13 12 17 17 N 1.47425 * 107.14165 * 337.53970 * 16 15 13 18 18 C 1.36940 * 126.06608 * 178.22848 * 17 16 15 19 19 H 1.07993 * 120.00067 * 179.69190 * 18 17 16 20 20 C 1.38809 * 119.99661 * 359.69181 * 18 17 16 21 21 N 1.31625 * 119.99846 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 120.00195 * 180.27470 * 20 18 17 23 23 H 1.48496 * 109.47177 * 269.72703 * 22 20 18 24 24 H 1.48510 * 109.46822 * 29.72570 * 22 20 18 25 25 H 1.48493 * 109.47251 * 149.72237 * 22 20 18 26 26 C 1.46471 * 107.87768 * 357.96479 * 17 16 15 27 27 H 1.09001 * 108.42878 * 270.37408 * 26 17 16 28 28 C 1.44090 * 121.21786 * 173.62625 * 10 8 7 29 29 C 1.36094 * 107.10286 * 0.25752 * 7 6 5 30 30 O 1.34051 * 125.37790 * 239.95387 * 5 2 1 31 31 H 1.08999 * 109.47034 * 299.99722 * 1 2 3 32 32 H 1.08994 * 109.46979 * 60.00424 * 1 2 3 33 33 H 1.09004 * 109.47292 * 180.02562 * 1 2 3 34 34 H 1.08998 * 109.46910 * 180.02562 * 3 2 1 35 35 H 1.09006 * 109.46854 * 300.00058 * 3 2 1 36 36 H 1.08999 * 109.46898 * 60.00194 * 3 2 1 37 37 H 1.09004 * 109.47063 * 300.00097 * 4 2 1 38 38 H 1.09002 * 109.46780 * 59.99919 * 4 2 1 39 39 H 1.08998 * 109.47249 * 180.02562 * 4 2 1 40 40 H 1.08995 * 109.76007 * 117.66307 * 11 10 8 41 41 H 1.08996 * 109.75877 * 356.90178 * 11 10 8 42 42 H 1.09001 * 109.25349 * 182.37121 * 12 11 10 43 43 H 1.08992 * 109.25553 * 62.93296 * 12 11 10 44 44 H 1.08997 * 110.78509 * 39.67780 * 15 13 12 45 45 H 1.09001 * 110.78415 * 162.92109 * 15 13 12 46 46 H 1.09004 * 110.02921 * 218.09295 * 16 15 13 47 47 H 1.09002 * 109.78474 * 96.85205 * 16 15 13 48 48 H 0.97006 * 119.99601 * 179.97438 * 21 20 18 49 49 H 1.09007 * 108.85036 * 6.58191 * 28 10 8 50 50 H 1.08998 * 108.06998 * 248.11184 * 28 10 8 51 51 H 1.08002 * 126.52764 * 179.74559 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 2.0323 -0.7104 1.2304 6 7 1.7838 -1.9480 1.5388 7 6 2.4046 -2.2322 2.7157 8 6 2.3838 -3.5230 3.4276 9 8 3.0779 -3.6853 4.4128 10 7 1.5955 -4.5232 2.9863 11 6 0.6342 -4.3108 1.8927 12 6 -0.7567 -4.6774 2.4094 13 6 -0.7792 -6.1224 2.9148 14 1 -0.7046 -6.8485 2.1054 15 6 -2.0783 -6.2908 3.7624 16 6 -1.6934 -5.6361 5.1081 17 7 -0.2220 -5.6583 5.1969 18 6 0.5318 -5.1442 6.2180 19 1 1.6087 -5.2190 6.1849 20 6 -0.0882 -4.5268 7.2956 21 7 -1.4006 -4.4352 7.3357 22 14 0.9403 -3.8186 8.6848 23 1 1.1484 -4.8570 9.7258 24 1 2.2558 -3.3802 8.1530 25 1 0.2346 -2.6555 9.2800 26 6 0.2905 -6.3335 4.0024 27 1 0.3612 -7.4006 4.2134 28 6 1.6542 -5.8363 3.5768 29 6 3.0431 -1.0988 3.1153 30 8 2.8069 -0.1658 2.1792 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5137 -0.8900 33 1 -0.3634 -1.0277 0.0005 34 1 3.1300 1.4424 -0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6767 1.9562 0.8900 37 1 1.6766 -1.7490 -1.2493 38 1 1.6766 -0.2074 -2.1392 39 1 3.1300 -0.7217 -1.2491 40 1 0.8924 -4.9471 1.0462 41 1 0.6496 -3.2648 1.5865 42 1 -1.4806 -4.5677 1.6019 43 1 -1.0252 -4.0069 3.2257 44 1 -2.9134 -5.7659 3.2987 45 1 -2.3157 -7.3456 3.9010 46 1 -2.1236 -6.2014 5.9348 47 1 -2.0512 -4.6068 5.1333 48 1 -1.8339 -4.0040 8.0889 49 1 2.3114 -5.8026 4.4458 50 1 2.0715 -6.5207 2.8383 51 1 3.6306 -0.9744 4.0130 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042061017.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:31:18 Heat of formation + Delta-G solvation = -0.765010 kcal Electronic energy + Delta-G solvation = -33049.092853 eV Core-core repulsion = 28950.212900 eV Total energy + Delta-G solvation = -4098.879953 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -44.57233 -41.42779 -39.58553 -37.93536 -36.73921 -35.83196 -34.68446 -32.84399 -31.25688 -30.50232 -30.10681 -28.23996 -28.17571 -26.57200 -26.30544 -24.47220 -24.07456 -23.75802 -21.76914 -21.74656 -20.43592 -19.71382 -18.68321 -18.44578 -17.90135 -17.67247 -17.06705 -16.66406 -16.25588 -16.14773 -15.96179 -15.60755 -15.35813 -14.98814 -14.92087 -14.59732 -14.42513 -14.33700 -14.17687 -13.75160 -13.29800 -13.19640 -13.15059 -13.06473 -12.99091 -12.69237 -12.66628 -12.58045 -12.57322 -12.38337 -12.37125 -12.08121 -11.95803 -11.91481 -11.71674 -11.67913 -11.38970 -11.33392 -11.20013 -10.68670 -10.56823 -10.12462 -9.49664 -8.81271 -7.83677 -5.14093 0.04624 0.93416 1.35353 1.36510 1.48457 1.49132 1.98479 2.29790 2.47874 2.71080 3.34762 3.44793 3.62039 3.67666 3.88141 3.91556 3.95529 3.99903 4.05601 4.10963 4.32433 4.39894 4.42154 4.49926 4.53667 4.60585 4.66710 4.72372 4.76038 4.78637 4.79200 4.88134 4.88506 4.98361 4.98787 4.99240 5.06874 5.13622 5.15758 5.25896 5.27954 5.38201 5.40190 5.41425 5.53327 5.62999 5.71003 5.79522 5.83049 6.22809 6.32964 6.53778 7.13532 7.15314 7.82792 8.46317 9.27198 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011719 B = 0.004075 C = 0.003541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2388.798246 B = 6869.239078 C = 7904.950709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.031 3.969 3 C -0.145 4.145 4 C -0.136 4.136 5 C 0.209 3.791 6 N -0.461 5.461 7 C -0.085 4.085 8 C 0.589 3.411 9 O -0.576 6.576 10 N -0.574 5.574 11 C 0.082 3.918 12 C -0.113 4.113 13 C -0.087 4.087 14 H 0.121 0.879 15 C -0.129 4.129 16 C 0.187 3.813 17 N -0.606 5.606 18 C -0.203 4.203 19 H 0.069 0.931 20 C -0.066 4.066 21 N -0.951 5.951 22 Si 0.956 3.044 23 H -0.284 1.284 24 H -0.283 1.283 25 H -0.293 1.293 26 C 0.143 3.857 27 H 0.032 0.968 28 C 0.113 3.887 29 C 0.012 3.988 30 O -0.189 6.189 31 H 0.048 0.952 32 H 0.102 0.898 33 H 0.061 0.939 34 H 0.062 0.938 35 H 0.099 0.901 36 H 0.055 0.945 37 H 0.061 0.939 38 H 0.100 0.900 39 H 0.056 0.944 40 H 0.088 0.912 41 H 0.136 0.864 42 H 0.097 0.903 43 H 0.025 0.975 44 H 0.080 0.920 45 H 0.070 0.930 46 H 0.000 1.000 47 H 0.004 0.996 48 H 0.242 0.758 49 H 0.056 0.944 50 H 0.090 0.910 51 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.970 8.599 -23.870 25.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.029 3.971 3 C -0.203 4.203 4 C -0.193 4.193 5 C 0.000 4.000 6 N -0.190 5.190 7 C -0.203 4.203 8 C 0.377 3.623 9 O -0.457 6.457 10 N -0.302 5.302 11 C -0.040 4.040 12 C -0.151 4.151 13 C -0.106 4.106 14 H 0.139 0.861 15 C -0.167 4.167 16 C 0.063 3.937 17 N -0.331 5.331 18 C -0.333 4.333 19 H 0.087 0.913 20 C -0.259 4.259 21 N -0.602 5.602 22 Si 0.786 3.214 23 H -0.211 1.211 24 H -0.209 1.209 25 H -0.219 1.219 26 C 0.036 3.964 27 H 0.050 0.950 28 C -0.012 4.012 29 C -0.062 4.062 30 O -0.075 6.075 31 H 0.068 0.932 32 H 0.121 0.879 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.118 0.882 36 H 0.075 0.925 37 H 0.081 0.919 38 H 0.119 0.881 39 H 0.075 0.925 40 H 0.107 0.893 41 H 0.153 0.847 42 H 0.115 0.885 43 H 0.044 0.956 44 H 0.098 0.902 45 H 0.089 0.911 46 H 0.018 0.982 47 H 0.022 0.978 48 H 0.051 0.949 49 H 0.074 0.926 50 H 0.107 0.893 51 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges 3.957 8.202 -23.527 25.228 hybrid contribution 0.789 0.560 2.620 2.793 sum 4.746 8.761 -20.907 23.160 Atomic orbital electron populations 1.21949 0.90813 1.03345 1.03667 1.19509 0.96977 0.95247 0.85321 1.21943 1.01820 0.92443 1.04066 1.21917 1.01315 1.00963 0.95121 1.27396 0.91149 0.88562 0.92911 1.70392 1.22018 1.14172 1.12414 1.21632 1.05639 0.96723 0.96342 1.17147 0.80260 0.82564 0.82302 1.90775 1.45977 1.82064 1.26846 1.47070 1.37658 1.10032 1.35488 1.22749 0.86524 1.06995 0.87691 1.21739 0.97447 0.95730 1.00214 1.22443 0.93986 0.97689 0.96460 0.86073 1.23016 0.97693 1.00634 0.95331 1.20949 0.83304 0.96233 0.93258 1.44501 1.02320 1.67039 1.19288 1.19151 0.89873 1.27766 0.96503 0.91305 1.25347 0.96672 1.02838 1.01002 1.70168 1.07814 1.50679 1.31572 0.85376 0.77933 0.77860 0.80209 1.21071 1.20896 1.21902 1.21014 0.92960 0.94822 0.87629 0.95038 1.20870 0.98341 0.83646 0.98328 1.25541 1.00492 0.85726 0.94427 1.84404 1.54528 1.40311 1.28275 0.93248 0.87894 0.92010 0.91915 0.88226 0.92537 0.91947 0.88086 0.92488 0.89348 0.84727 0.88454 0.95572 0.90169 0.91085 0.98195 0.97774 0.94910 0.92569 0.89254 0.74053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.88 8.46 71.98 0.61 -1.27 16 2 C 0.03 0.45 0.99 -52.93 -0.05 0.40 16 3 C -0.15 -1.59 8.01 71.98 0.58 -1.01 16 4 C -0.14 -1.52 8.46 71.98 0.61 -0.91 16 5 C 0.21 4.89 6.44 88.39 0.57 5.46 16 6 N -0.46 -13.15 7.83 -293.03 -2.30 -15.45 16 7 C -0.08 -2.93 6.70 40.41 0.27 -2.66 16 8 C 0.59 24.81 7.68 86.66 0.67 25.48 16 9 O -0.58 -28.55 16.31 -4.05 -0.07 -28.61 16 10 N -0.57 -21.97 2.93 -833.65 -2.44 -24.41 16 11 C 0.08 2.48 6.19 86.20 0.53 3.01 16 12 C -0.11 -3.60 5.08 30.57 0.16 -3.45 16 13 C -0.09 -2.78 3.63 -9.37 -0.03 -2.81 16 14 H 0.12 2.90 8.14 -2.39 -0.02 2.88 16 15 C -0.13 -4.63 6.34 32.16 0.20 -4.42 16 16 C 0.19 9.57 4.64 86.72 0.40 9.97 16 17 N -0.61 -32.14 3.20 -674.09 -2.16 -34.30 16 18 C -0.20 -12.24 9.70 84.03 0.82 -11.43 16 19 H 0.07 4.28 6.52 -2.91 -0.02 4.26 16 20 C -0.07 -4.10 5.49 84.86 0.47 -3.64 16 21 N -0.95 -60.77 10.38 21.65 0.22 -60.55 16 22 Si 0.96 51.06 29.55 68.60 2.03 53.09 16 23 H -0.28 -14.67 7.11 99.48 0.71 -13.96 16 24 H -0.28 -15.23 7.11 99.48 0.71 -14.52 16 25 H -0.29 -15.42 7.11 99.48 0.71 -14.72 16 26 C 0.14 5.87 3.02 44.77 0.14 6.00 16 27 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 28 C 0.11 4.43 5.53 86.26 0.48 4.91 16 29 C 0.01 0.36 11.95 67.32 0.80 1.16 16 30 O -0.19 -4.75 10.11 0.32 0.00 -4.75 16 31 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.06 0.98 8.14 -2.38 -0.02 0.96 16 34 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 35 H 0.10 0.57 8.14 -2.38 -0.02 0.55 16 36 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 37 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 38 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 39 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 40 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 41 H 0.14 4.09 4.05 -20.69 -0.08 4.01 16 42 H 0.10 2.38 8.14 -2.39 -0.02 2.36 16 43 H 0.03 1.09 6.98 -2.39 -0.02 1.08 16 44 H 0.08 2.55 7.99 -2.39 -0.02 2.53 16 45 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 46 H 0.00 -0.01 7.59 -2.38 -0.02 -0.03 16 47 H 0.00 0.23 7.10 -2.39 -0.02 0.22 16 48 H 0.24 15.11 8.31 -92.70 -0.77 14.34 16 49 H 0.06 2.65 5.44 -2.38 -0.01 2.64 16 50 H 0.09 2.81 8.14 -2.39 -0.02 2.79 16 51 H 0.24 6.10 8.06 -2.91 -0.02 6.07 16 Total: -1.00 -81.40 394.10 3.35 -78.05 By element: Atomic # 1 Polarization: 11.28 SS G_CDS: 0.85 Total: 12.13 kcal Atomic # 6 Polarization: 17.58 SS G_CDS: 7.21 Total: 24.79 kcal Atomic # 7 Polarization: -128.03 SS G_CDS: -6.67 Total: -134.70 kcal Atomic # 8 Polarization: -33.30 SS G_CDS: -0.06 Total: -33.36 kcal Atomic # 14 Polarization: 51.06 SS G_CDS: 2.03 Total: 53.09 kcal Total: -81.40 3.35 -78.05 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042061017.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.289 kcal (2) G-P(sol) polarization free energy of solvation -81.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds