Wall clock time and date at job start Wed Apr 1 2020 05:31:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.46907 * 2 1 4 4 C 1.53005 * 109.46929 * 240.00177 * 2 1 3 5 5 C 1.50696 * 109.47281 * 120.00001 * 2 1 3 6 6 N 1.29938 * 125.37976 * 59.99841 * 5 2 1 7 7 C 1.36062 * 108.47807 * 179.97438 * 6 5 2 8 8 C 1.47419 * 126.44842 * 179.97438 * 7 6 5 9 9 O 1.21617 * 120.00211 * 187.52140 * 8 7 6 10 10 N 1.34780 * 120.00127 * 7.51741 * 8 7 6 11 11 C 1.46597 * 119.74826 * 7.00869 * 10 8 7 12 12 C 1.53888 * 110.71185 * 132.26093 * 11 10 8 13 13 C 1.51973 * 107.28710 * 51.80523 * 12 11 10 14 14 H 1.09004 * 111.02073 * 57.33214 * 13 12 11 15 15 C 1.53702 * 115.00488 * 184.55735 * 13 12 11 16 16 C 1.55297 * 101.81729 * 153.46346 * 15 13 12 17 17 N 1.48150 * 107.04400 * 337.54905 * 16 15 13 18 18 C 1.36936 * 126.40154 * 175.00026 * 17 16 15 19 19 H 1.07998 * 120.00382 * 180.02562 * 18 17 16 20 20 C 1.38811 * 119.99632 * 0.02982 * 18 17 16 21 21 N 1.31618 * 120.00118 * 359.97438 * 20 18 17 22 22 Si 1.86810 * 119.99829 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.46944 * 59.99746 * 22 20 18 24 24 H 1.48500 * 109.46808 * 180.02562 * 22 20 18 25 25 H 1.48505 * 109.46895 * 299.99588 * 22 20 18 26 26 C 1.45510 * 107.20608 * 355.00373 * 17 16 15 27 27 H 1.08994 * 109.56966 * 273.37174 * 26 17 16 28 28 C 1.47792 * 119.75273 * 186.73628 * 10 8 7 29 29 C 1.36094 * 107.10611 * 0.02562 * 7 6 5 30 30 O 1.34054 * 125.37708 * 239.95912 * 5 2 1 31 31 H 1.08998 * 109.47001 * 300.00089 * 1 2 3 32 32 H 1.08999 * 109.47383 * 59.99629 * 1 2 3 33 33 H 1.08996 * 109.47019 * 180.02562 * 1 2 3 34 34 H 1.09000 * 109.46944 * 180.02562 * 3 2 1 35 35 H 1.09005 * 109.47186 * 299.99692 * 3 2 1 36 36 H 1.08998 * 109.47363 * 60.00133 * 3 2 1 37 37 H 1.08996 * 109.47035 * 299.99702 * 4 2 1 38 38 H 1.08999 * 109.46930 * 59.99917 * 4 2 1 39 39 H 1.09003 * 109.46832 * 179.97438 * 4 2 1 40 40 H 1.08998 * 109.22506 * 252.58002 * 11 10 8 41 41 H 1.08999 * 109.23019 * 11.98650 * 11 10 8 42 42 H 1.08992 * 109.89101 * 171.24770 * 12 11 10 43 43 H 1.09005 * 109.89063 * 292.28383 * 12 11 10 44 44 H 1.09001 * 110.95491 * 271.59064 * 15 13 12 45 45 H 1.08997 * 110.96157 * 35.28828 * 15 13 12 46 46 H 1.09001 * 109.92534 * 96.90277 * 16 15 13 47 47 H 1.09002 * 109.91739 * 218.00014 * 16 15 13 48 48 H 0.97006 * 119.99806 * 180.02562 * 21 20 18 49 49 H 1.09000 * 110.06308 * 350.46646 * 28 10 8 50 50 H 1.08993 * 110.06894 * 112.03784 * 28 10 8 51 51 H 1.07998 * 126.53060 * 180.02562 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0324 -0.7104 1.2304 6 7 1.7837 -1.9479 1.5389 7 6 2.4047 -2.2321 2.7157 8 6 2.3838 -3.5229 3.4276 9 8 2.8660 -3.6114 4.5405 10 7 1.8303 -4.6049 2.8450 11 6 1.3901 -4.5339 1.4485 12 6 1.8990 -5.7502 0.6549 13 6 1.5002 -6.9946 1.4307 14 1 0.4217 -7.0302 1.5852 15 6 2.0197 -8.3183 0.8472 16 6 2.0814 -9.2200 2.1101 17 7 2.1663 -8.3192 3.2832 18 6 2.1433 -8.6951 4.5997 19 1 2.2119 -7.9475 5.3761 20 6 2.0318 -10.0371 4.9364 21 7 1.9477 -10.9482 3.9903 22 14 2.0012 -10.5500 6.7325 23 1 0.8432 -9.9128 7.4095 24 1 1.8771 -12.0270 6.8234 25 1 3.2595 -10.1180 7.3921 26 6 2.2785 -6.9603 2.7751 27 1 3.3260 -6.7274 2.5840 28 6 1.6773 -5.8559 3.6170 29 6 3.0477 -1.1002 3.1126 30 8 2.8070 -0.1656 2.1792 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 -0.3633 -1.0276 0.0005 34 1 3.1300 1.4425 -0.0005 35 1 1.6767 1.9564 -0.8900 36 1 1.6767 1.9564 0.8900 37 1 1.6767 -1.7489 -1.2493 38 1 1.6766 -0.2074 -2.1392 39 1 3.1300 -0.7208 -1.2495 40 1 0.3008 -4.5143 1.4161 41 1 1.7791 -3.6221 0.9954 42 1 1.4400 -5.7664 -0.3336 43 1 2.9838 -5.7031 0.5593 44 1 1.3215 -8.7217 0.1138 45 1 3.0100 -8.1898 0.4103 46 1 1.1807 -9.8305 2.1750 47 1 2.9618 -9.8612 2.0659 48 1 1.8694 -11.8860 4.2257 49 1 2.2099 -5.7778 4.5649 50 1 0.6214 -6.0584 3.7955 51 1 3.6399 -0.9775 4.0074 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042061020.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:31:30 Heat of formation + Delta-G solvation = 21.549333 kcal Electronic energy + Delta-G solvation = -31927.299513 eV Core-core repulsion = 27829.387182 eV Total energy + Delta-G solvation = -4097.912331 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -43.70429 -39.98811 -38.15914 -37.38827 -35.49375 -34.80711 -32.82682 -31.18291 -30.22710 -29.27225 -28.39125 -27.80060 -27.73596 -24.96123 -24.49260 -23.58199 -22.69848 -22.08929 -20.68222 -19.95593 -19.52704 -18.91139 -17.49087 -17.06133 -16.77620 -16.36829 -15.79077 -15.42822 -14.97609 -14.71688 -14.56983 -14.44600 -14.26257 -13.94710 -13.75591 -13.44212 -13.28440 -12.88140 -12.80005 -12.71225 -12.60445 -12.26105 -12.12642 -12.06787 -11.83302 -11.69003 -11.53020 -11.47036 -11.36753 -11.25576 -10.97213 -10.73587 -10.71432 -10.39856 -10.13232 -9.96301 -9.89115 -9.61946 -9.54056 -9.37012 -9.20613 -8.58117 -8.31948 -6.80853 -5.67493 -3.01004 0.98013 1.84081 2.30421 3.06644 3.32431 3.45563 3.49345 3.50957 3.55152 4.28262 4.38312 4.40249 4.55030 4.66031 4.73601 5.11966 5.12648 5.17031 5.17538 5.19975 5.27942 5.30986 5.37253 5.41731 5.44732 5.45714 5.52304 5.57954 5.69273 5.74449 5.78890 5.82929 5.85842 5.86210 5.99600 6.06608 6.16789 6.22112 6.29837 6.33859 6.43279 6.59277 6.63934 6.79006 6.85219 7.13044 7.27149 7.59931 7.62031 7.67515 7.85503 8.26386 8.29837 9.23605 9.86506 10.53830 11.44850 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.019487 B = 0.002707 C = 0.002456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1436.534254 B =10342.323198 C =11397.245815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.032 3.968 3 C -0.148 4.148 4 C -0.141 4.141 5 C 0.202 3.798 6 N -0.450 5.450 7 C -0.060 4.060 8 C 0.593 3.407 9 O -0.540 6.540 10 N -0.585 5.585 11 C 0.089 3.911 12 C -0.119 4.119 13 C -0.112 4.112 14 H 0.076 0.924 15 C -0.138 4.138 16 C 0.178 3.822 17 N -0.592 5.592 18 C -0.228 4.228 19 H 0.079 0.921 20 C -0.007 4.007 21 N -0.922 5.922 22 Si 0.910 3.090 23 H -0.285 1.285 24 H -0.291 1.291 25 H -0.285 1.285 26 C 0.157 3.843 27 H 0.023 0.977 28 C 0.115 3.885 29 C 0.005 3.995 30 O -0.194 6.194 31 H 0.059 0.941 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.063 0.937 35 H 0.072 0.928 36 H 0.063 0.937 37 H 0.072 0.928 38 H 0.073 0.927 39 H 0.060 0.940 40 H 0.059 0.941 41 H 0.125 0.875 42 H 0.071 0.929 43 H 0.063 0.937 44 H 0.058 0.942 45 H 0.055 0.945 46 H 0.055 0.945 47 H 0.037 0.963 48 H 0.252 0.748 49 H 0.092 0.908 50 H 0.072 0.928 51 H 0.230 0.770 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.667 24.667 -13.153 28.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.030 3.970 3 C -0.205 4.205 4 C -0.199 4.199 5 C -0.006 4.006 6 N -0.180 5.180 7 C -0.180 4.180 8 C 0.379 3.621 9 O -0.418 6.418 10 N -0.317 5.317 11 C -0.034 4.034 12 C -0.158 4.158 13 C -0.132 4.132 14 H 0.094 0.906 15 C -0.177 4.177 16 C 0.054 3.946 17 N -0.317 5.317 18 C -0.356 4.356 19 H 0.097 0.903 20 C -0.203 4.203 21 N -0.570 5.570 22 Si 0.741 3.259 23 H -0.211 1.211 24 H -0.216 1.216 25 H -0.211 1.211 26 C 0.049 3.951 27 H 0.040 0.960 28 C -0.007 4.007 29 C -0.068 4.068 30 O -0.079 6.079 31 H 0.078 0.922 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.083 0.917 35 H 0.091 0.909 36 H 0.082 0.918 37 H 0.091 0.909 38 H 0.092 0.908 39 H 0.079 0.921 40 H 0.078 0.922 41 H 0.142 0.858 42 H 0.089 0.911 43 H 0.081 0.919 44 H 0.077 0.923 45 H 0.074 0.926 46 H 0.073 0.927 47 H 0.055 0.945 48 H 0.063 0.937 49 H 0.111 0.889 50 H 0.090 0.910 51 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -1.801 23.963 -12.782 27.219 hybrid contribution 0.415 -0.102 1.480 1.541 sum -1.387 23.861 -11.302 26.439 Atomic orbital electron populations 1.21917 0.91431 1.03756 1.02696 1.19179 0.96599 0.94518 0.86662 1.21927 1.01939 0.93553 1.03094 1.21927 1.01598 1.01421 0.94938 1.26446 0.92760 0.88762 0.92681 1.70700 1.22328 1.12512 1.12473 1.21894 1.03826 0.97130 0.95123 1.16866 0.78465 0.81896 0.84852 1.90823 1.46872 1.84559 1.19536 1.48071 1.58981 1.11410 1.13215 1.22454 0.99545 1.01064 0.80333 1.21820 1.01107 0.94488 0.98349 1.22272 1.00018 0.93723 0.97161 0.90554 1.22731 0.99545 0.96272 0.99109 1.21526 1.01056 0.90312 0.81733 1.44160 1.86190 0.98994 1.02329 1.19006 1.43449 0.91791 0.81326 0.90333 1.24778 1.02176 0.95727 0.97603 1.69938 1.56613 1.00231 1.30196 0.86222 0.78005 0.77278 0.84440 1.21116 1.21647 1.21128 1.20862 0.95902 0.86691 0.91693 0.95960 1.21710 1.01551 0.81553 0.95905 1.25274 1.01155 0.86159 0.94233 1.84379 1.54325 1.40741 1.28489 0.92179 0.90854 0.90887 0.91748 0.90879 0.91776 0.90866 0.90824 0.92095 0.92238 0.85817 0.91067 0.91866 0.92283 0.92640 0.92674 0.94486 0.93744 0.88938 0.90996 0.75371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.84 8.46 37.16 0.31 -0.52 16 2 C 0.03 0.21 0.99 -155.66 -0.15 0.06 16 3 C -0.15 -0.75 8.01 37.16 0.30 -0.46 16 4 C -0.14 -0.83 8.46 37.16 0.31 -0.51 16 5 C 0.20 2.02 6.44 -13.08 -0.08 1.93 16 6 N -0.45 -5.48 7.83 -7.66 -0.06 -5.54 16 7 C -0.06 -0.84 6.61 -83.02 -0.55 -1.38 16 8 C 0.59 10.30 7.65 -12.52 -0.10 10.21 16 9 O -0.54 -10.89 16.27 5.26 0.09 -10.80 16 10 N -0.59 -10.13 3.02 -174.28 -0.53 -10.66 16 11 C 0.09 1.28 5.86 -3.53 -0.02 1.26 16 12 C -0.12 -1.73 5.72 -26.79 -0.15 -1.88 16 13 C -0.11 -2.02 2.61 -89.51 -0.23 -2.25 16 14 H 0.08 1.42 8.14 -51.93 -0.42 0.99 16 15 C -0.14 -2.62 6.54 -25.15 -0.16 -2.78 16 16 C 0.18 4.38 5.45 -1.92 -0.01 4.37 16 17 N -0.59 -15.34 3.35 -163.16 -0.55 -15.89 16 18 C -0.23 -6.44 9.88 -15.06 -0.15 -6.59 16 19 H 0.08 2.17 7.41 -52.49 -0.39 1.78 16 20 C -0.01 -0.19 5.49 -17.43 -0.10 -0.29 16 21 N -0.92 -27.43 10.43 55.49 0.58 -26.85 16 22 Si 0.91 22.68 29.55 -169.99 -5.02 17.65 16 23 H -0.28 -6.99 7.11 56.52 0.40 -6.58 16 24 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 25 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 26 C 0.16 3.40 2.74 -68.04 -0.19 3.21 16 27 H 0.02 0.53 7.93 -51.93 -0.41 0.12 16 28 C 0.11 2.32 5.68 -4.18 -0.02 2.29 16 29 C 0.01 0.06 11.95 29.96 0.36 0.42 16 30 O -0.19 -1.98 10.11 6.48 0.07 -1.91 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 36 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 39 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.12 1.66 4.27 -56.77 -0.24 1.42 16 42 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.06 0.95 7.99 -51.93 -0.41 0.54 16 44 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 45 H 0.05 1.00 8.12 -51.93 -0.42 0.57 16 46 H 0.06 1.49 7.21 -51.93 -0.37 1.11 16 47 H 0.04 1.00 7.77 -51.93 -0.40 0.60 16 48 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 49 H 0.09 2.06 6.73 -51.93 -0.35 1.71 16 50 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 51 H 0.23 1.96 8.06 -52.49 -0.42 1.54 16 LS Contribution 398.20 15.07 6.00 6.00 Total: -1.00 -33.17 398.20 -8.54 -41.71 By element: Atomic # 1 Polarization: 7.69 SS G_CDS: -8.48 Total: -0.79 kcal Atomic # 6 Polarization: 7.71 SS G_CDS: -0.64 Total: 7.07 kcal Atomic # 7 Polarization: -58.38 SS G_CDS: -0.55 Total: -58.93 kcal Atomic # 8 Polarization: -12.87 SS G_CDS: 0.15 Total: -12.72 kcal Atomic # 14 Polarization: 22.68 SS G_CDS: -5.02 Total: 17.65 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -33.17 -8.54 -41.71 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042061020.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.264 kcal (2) G-P(sol) polarization free energy of solvation -33.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.714 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds