Wall clock time and date at job start Wed Apr 1 2020 05:31:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.46907 * 2 1 4 4 C 1.53005 * 109.46929 * 240.00177 * 2 1 3 5 5 C 1.50696 * 109.47281 * 120.00001 * 2 1 3 6 6 N 1.29938 * 125.37976 * 59.99841 * 5 2 1 7 7 C 1.36062 * 108.47807 * 179.97438 * 6 5 2 8 8 C 1.47419 * 126.44842 * 179.97438 * 7 6 5 9 9 O 1.21617 * 120.00211 * 187.52140 * 8 7 6 10 10 N 1.34780 * 120.00127 * 7.51741 * 8 7 6 11 11 C 1.46597 * 119.74826 * 7.00869 * 10 8 7 12 12 C 1.53888 * 110.71185 * 132.26093 * 11 10 8 13 13 C 1.51973 * 107.28710 * 51.80523 * 12 11 10 14 14 H 1.09004 * 111.02073 * 57.33214 * 13 12 11 15 15 C 1.53702 * 115.00488 * 184.55735 * 13 12 11 16 16 C 1.55297 * 101.81729 * 153.46346 * 15 13 12 17 17 N 1.48150 * 107.04400 * 337.54905 * 16 15 13 18 18 C 1.36936 * 126.40154 * 175.00026 * 17 16 15 19 19 H 1.07998 * 120.00382 * 180.02562 * 18 17 16 20 20 C 1.38811 * 119.99632 * 0.02982 * 18 17 16 21 21 N 1.31618 * 120.00118 * 359.97438 * 20 18 17 22 22 Si 1.86810 * 119.99829 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.46944 * 59.99746 * 22 20 18 24 24 H 1.48500 * 109.46808 * 180.02562 * 22 20 18 25 25 H 1.48505 * 109.46895 * 299.99588 * 22 20 18 26 26 C 1.45510 * 107.20608 * 355.00373 * 17 16 15 27 27 H 1.08994 * 109.56966 * 273.37174 * 26 17 16 28 28 C 1.47792 * 119.75273 * 186.73628 * 10 8 7 29 29 C 1.36094 * 107.10611 * 0.02562 * 7 6 5 30 30 O 1.34054 * 125.37708 * 239.95912 * 5 2 1 31 31 H 1.08998 * 109.47001 * 300.00089 * 1 2 3 32 32 H 1.08999 * 109.47383 * 59.99629 * 1 2 3 33 33 H 1.08996 * 109.47019 * 180.02562 * 1 2 3 34 34 H 1.09000 * 109.46944 * 180.02562 * 3 2 1 35 35 H 1.09005 * 109.47186 * 299.99692 * 3 2 1 36 36 H 1.08998 * 109.47363 * 60.00133 * 3 2 1 37 37 H 1.08996 * 109.47035 * 299.99702 * 4 2 1 38 38 H 1.08999 * 109.46930 * 59.99917 * 4 2 1 39 39 H 1.09003 * 109.46832 * 179.97438 * 4 2 1 40 40 H 1.08998 * 109.22506 * 252.58002 * 11 10 8 41 41 H 1.08999 * 109.23019 * 11.98650 * 11 10 8 42 42 H 1.08992 * 109.89101 * 171.24770 * 12 11 10 43 43 H 1.09005 * 109.89063 * 292.28383 * 12 11 10 44 44 H 1.09001 * 110.95491 * 271.59064 * 15 13 12 45 45 H 1.08997 * 110.96157 * 35.28828 * 15 13 12 46 46 H 1.09001 * 109.92534 * 96.90277 * 16 15 13 47 47 H 1.09002 * 109.91739 * 218.00014 * 16 15 13 48 48 H 0.97006 * 119.99806 * 180.02562 * 21 20 18 49 49 H 1.09000 * 110.06308 * 350.46646 * 28 10 8 50 50 H 1.08993 * 110.06894 * 112.03784 * 28 10 8 51 51 H 1.07998 * 126.53060 * 180.02562 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0324 -0.7104 1.2304 6 7 1.7837 -1.9479 1.5389 7 6 2.4047 -2.2321 2.7157 8 6 2.3838 -3.5229 3.4276 9 8 2.8660 -3.6114 4.5405 10 7 1.8303 -4.6049 2.8450 11 6 1.3901 -4.5339 1.4485 12 6 1.8990 -5.7502 0.6549 13 6 1.5002 -6.9946 1.4307 14 1 0.4217 -7.0302 1.5852 15 6 2.0197 -8.3183 0.8472 16 6 2.0814 -9.2200 2.1101 17 7 2.1663 -8.3192 3.2832 18 6 2.1433 -8.6951 4.5997 19 1 2.2119 -7.9475 5.3761 20 6 2.0318 -10.0371 4.9364 21 7 1.9477 -10.9482 3.9903 22 14 2.0012 -10.5500 6.7325 23 1 0.8432 -9.9128 7.4095 24 1 1.8771 -12.0270 6.8234 25 1 3.2595 -10.1180 7.3921 26 6 2.2785 -6.9603 2.7751 27 1 3.3260 -6.7274 2.5840 28 6 1.6773 -5.8559 3.6170 29 6 3.0477 -1.1002 3.1126 30 8 2.8070 -0.1656 2.1792 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 -0.3633 -1.0276 0.0005 34 1 3.1300 1.4425 -0.0005 35 1 1.6767 1.9564 -0.8900 36 1 1.6767 1.9564 0.8900 37 1 1.6767 -1.7489 -1.2493 38 1 1.6766 -0.2074 -2.1392 39 1 3.1300 -0.7208 -1.2495 40 1 0.3008 -4.5143 1.4161 41 1 1.7791 -3.6221 0.9954 42 1 1.4400 -5.7664 -0.3336 43 1 2.9838 -5.7031 0.5593 44 1 1.3215 -8.7217 0.1138 45 1 3.0100 -8.1898 0.4103 46 1 1.1807 -9.8305 2.1750 47 1 2.9618 -9.8612 2.0659 48 1 1.8694 -11.8860 4.2257 49 1 2.2099 -5.7778 4.5649 50 1 0.6214 -6.0584 3.7955 51 1 3.6399 -0.9775 4.0074 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042061020.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:31:29 Heat of formation + Delta-G solvation = 0.249347 kcal Electronic energy + Delta-G solvation = -31928.223150 eV Core-core repulsion = 27829.387182 eV Total energy + Delta-G solvation = -4098.835967 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -44.58266 -41.44077 -39.71687 -37.91714 -36.97098 -35.87923 -34.66246 -32.92695 -31.41849 -30.63511 -30.14712 -28.21240 -28.15792 -26.57547 -26.20529 -24.39522 -23.98865 -23.48749 -21.84948 -21.68879 -20.94356 -19.89934 -18.81303 -18.39709 -17.93375 -17.63892 -17.04169 -16.78502 -16.36968 -16.13151 -15.83090 -15.68515 -15.42722 -14.98030 -14.88647 -14.85354 -14.44099 -14.40384 -14.01294 -13.90503 -13.58458 -13.22805 -13.17553 -13.10769 -13.04400 -12.79774 -12.64867 -12.55457 -12.55229 -12.39978 -12.19341 -12.04035 -11.94394 -11.89957 -11.79484 -11.75405 -11.56052 -11.42322 -11.06246 -10.75350 -10.73827 -10.15600 -9.70854 -8.93392 -7.87731 -5.23120 0.02314 0.89481 1.42276 1.45528 1.49001 1.51847 1.78259 2.11136 2.47796 2.67782 3.30080 3.39339 3.51879 3.68396 3.79889 3.92771 3.93643 3.96241 4.00177 4.08237 4.24612 4.28180 4.33736 4.41867 4.51089 4.55912 4.59882 4.71891 4.77011 4.78979 4.80742 4.82345 4.90747 4.91090 5.01019 5.01136 5.06197 5.08098 5.12819 5.14601 5.26225 5.32934 5.40623 5.43168 5.43624 5.47565 5.61727 5.64258 5.76103 6.16930 6.21615 6.46774 6.93866 7.06131 7.73966 8.41538 9.23154 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.019487 B = 0.002707 C = 0.002456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1436.534254 B =10342.323198 C =11397.245815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.030 3.970 3 C -0.145 4.145 4 C -0.140 4.140 5 C 0.212 3.788 6 N -0.464 5.464 7 C -0.091 4.091 8 C 0.589 3.411 9 O -0.579 6.579 10 N -0.588 5.588 11 C 0.089 3.911 12 C -0.108 4.108 13 C -0.096 4.096 14 H 0.075 0.925 15 C -0.122 4.122 16 C 0.181 3.819 17 N -0.612 5.612 18 C -0.240 4.240 19 H 0.075 0.925 20 C -0.061 4.061 21 N -0.948 5.948 22 Si 0.973 3.027 23 H -0.276 1.276 24 H -0.290 1.290 25 H -0.281 1.281 26 C 0.151 3.849 27 H 0.005 0.995 28 C 0.128 3.872 29 C 0.027 3.973 30 O -0.188 6.188 31 H 0.054 0.946 32 H 0.098 0.902 33 H 0.060 0.940 34 H 0.061 0.939 35 H 0.095 0.905 36 H 0.060 0.940 37 H 0.062 0.938 38 H 0.098 0.902 39 H 0.056 0.944 40 H 0.069 0.931 41 H 0.141 0.859 42 H 0.110 0.890 43 H 0.060 0.940 44 H 0.087 0.913 45 H 0.069 0.931 46 H 0.024 0.976 47 H 0.001 0.999 48 H 0.248 0.752 49 H 0.062 0.938 50 H 0.067 0.933 51 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.283 27.635 -15.431 31.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.029 3.971 3 C -0.203 4.203 4 C -0.197 4.197 5 C 0.003 3.997 6 N -0.194 5.194 7 C -0.209 4.209 8 C 0.378 3.622 9 O -0.460 6.460 10 N -0.319 5.319 11 C -0.032 4.032 12 C -0.146 4.146 13 C -0.116 4.116 14 H 0.094 0.906 15 C -0.160 4.160 16 C 0.057 3.943 17 N -0.337 5.337 18 C -0.369 4.369 19 H 0.093 0.907 20 C -0.255 4.255 21 N -0.597 5.597 22 Si 0.802 3.198 23 H -0.202 1.202 24 H -0.215 1.215 25 H -0.208 1.208 26 C 0.043 3.957 27 H 0.023 0.977 28 C 0.004 3.996 29 C -0.047 4.047 30 O -0.073 6.073 31 H 0.073 0.927 32 H 0.117 0.883 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.114 0.886 36 H 0.079 0.921 37 H 0.081 0.919 38 H 0.116 0.884 39 H 0.075 0.925 40 H 0.087 0.913 41 H 0.158 0.842 42 H 0.129 0.871 43 H 0.079 0.921 44 H 0.106 0.894 45 H 0.087 0.913 46 H 0.042 0.958 47 H 0.019 0.981 48 H 0.057 0.943 49 H 0.081 0.919 50 H 0.085 0.915 51 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges -2.429 26.966 -15.098 31.000 hybrid contribution 0.633 -0.923 2.169 2.441 sum -1.796 26.043 -12.929 29.131 Atomic orbital electron populations 1.21929 0.90728 1.03252 1.03707 1.19481 0.97042 0.95228 0.85344 1.21941 1.01794 0.92426 1.04109 1.21946 1.01379 1.01069 0.95339 1.27264 0.91307 0.88248 0.92917 1.70549 1.22988 1.13818 1.12031 1.21452 1.06642 0.96237 0.96619 1.17314 0.77412 0.82921 0.84556 1.90789 1.48547 1.85376 1.21301 1.48126 1.59194 1.10315 1.14233 1.22675 1.00181 1.01813 0.78525 1.21803 1.01268 0.92018 0.99543 1.22193 0.99291 0.95035 0.95045 0.90643 1.22608 1.01279 0.95280 0.96791 1.21353 0.97843 0.90884 0.84226 1.44429 1.85994 1.01236 1.02062 1.19289 1.42835 0.92009 0.82771 0.90687 1.25577 1.02501 0.95777 1.01605 1.70145 1.57643 1.00070 1.31844 0.85232 0.78130 0.76683 0.79803 1.20240 1.21544 1.20770 1.20971 0.95587 0.85136 0.94041 0.97717 1.21298 1.00468 0.82796 0.94999 1.25663 0.99480 0.85272 0.94322 1.84436 1.54250 1.40279 1.28375 0.92725 0.88339 0.92133 0.91996 0.88581 0.92121 0.91866 0.88373 0.92472 0.91266 0.84233 0.87136 0.92148 0.89409 0.91278 0.95755 0.98097 0.94277 0.91920 0.91473 0.73270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.24 8.46 71.98 0.61 -0.63 16 2 C 0.03 0.31 0.99 -52.93 -0.05 0.26 16 3 C -0.15 -1.00 8.01 71.98 0.58 -0.42 16 4 C -0.14 -1.18 8.46 71.98 0.61 -0.57 16 5 C 0.21 3.74 6.44 88.39 0.57 4.31 16 6 N -0.46 -10.48 7.83 -293.03 -2.29 -12.78 16 7 C -0.09 -2.45 6.61 40.41 0.27 -2.18 16 8 C 0.59 20.71 7.65 86.66 0.66 21.37 16 9 O -0.58 -24.19 16.27 -4.08 -0.07 -24.26 16 10 N -0.59 -20.41 3.02 -823.54 -2.48 -22.89 16 11 C 0.09 2.40 5.86 86.66 0.51 2.91 16 12 C -0.11 -2.83 5.72 30.56 0.17 -2.66 16 13 C -0.10 -3.34 2.61 -10.07 -0.03 -3.37 16 14 H 0.08 2.68 8.14 -2.39 -0.02 2.66 16 15 C -0.12 -4.46 6.54 31.62 0.21 -4.26 16 16 C 0.18 9.24 5.45 86.85 0.47 9.71 16 17 N -0.61 -33.00 3.35 -670.12 -2.24 -35.24 16 18 C -0.24 -14.15 9.88 84.03 0.83 -13.32 16 19 H 0.08 4.35 7.41 -2.91 -0.02 4.33 16 20 C -0.06 -3.64 5.49 84.86 0.47 -3.17 16 21 N -0.95 -58.58 10.43 21.65 0.23 -58.35 16 22 Si 0.97 47.94 29.55 68.60 2.03 49.97 16 23 H -0.28 -13.14 7.11 99.48 0.71 -12.44 16 24 H -0.29 -14.11 7.11 99.48 0.71 -13.40 16 25 H -0.28 -13.60 7.11 99.48 0.71 -12.89 16 26 C 0.15 6.66 2.74 45.45 0.12 6.78 16 27 H 0.01 0.26 7.93 -2.39 -0.02 0.24 16 28 C 0.13 5.34 5.68 85.59 0.49 5.83 16 29 C 0.03 0.56 11.95 67.32 0.80 1.37 16 30 O -0.19 -3.41 10.11 0.28 0.00 -3.41 16 31 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.10 0.40 8.14 -2.39 -0.02 0.38 16 33 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 35 H 0.10 0.24 8.14 -2.38 -0.02 0.22 16 36 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 37 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 38 H 0.10 0.36 8.14 -2.39 -0.02 0.34 16 39 H 0.06 0.53 8.14 -2.39 -0.02 0.52 16 40 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 41 H 0.14 3.44 4.27 -11.95 -0.05 3.39 16 42 H 0.11 2.14 8.14 -2.39 -0.02 2.12 16 43 H 0.06 1.66 7.99 -2.38 -0.02 1.64 16 44 H 0.09 2.75 8.14 -2.39 -0.02 2.74 16 45 H 0.07 2.37 8.12 -2.39 -0.02 2.35 16 46 H 0.02 1.36 7.21 -2.39 -0.02 1.35 16 47 H 0.00 0.04 7.77 -2.39 -0.02 0.03 16 48 H 0.25 14.88 8.31 -92.70 -0.77 14.11 16 49 H 0.06 2.97 6.73 -2.39 -0.02 2.95 16 50 H 0.07 2.83 8.14 -2.39 -0.02 2.81 16 51 H 0.25 3.88 8.06 -2.91 -0.02 3.86 16 Total: -1.00 -76.51 398.20 3.33 -73.18 By element: Atomic # 1 Polarization: 10.94 SS G_CDS: 0.87 Total: 11.82 kcal Atomic # 6 Polarization: 14.68 SS G_CDS: 7.29 Total: 21.97 kcal Atomic # 7 Polarization: -122.47 SS G_CDS: -6.80 Total: -129.27 kcal Atomic # 8 Polarization: -27.61 SS G_CDS: -0.06 Total: -27.67 kcal Atomic # 14 Polarization: 47.94 SS G_CDS: 2.03 Total: 49.97 kcal Total: -76.51 3.33 -73.18 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042061020.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.430 kcal (2) G-P(sol) polarization free energy of solvation -76.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.181 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds