Wall clock time and date at job start Wed Apr 1 2020 05:29:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53009 * 109.46899 * 2 1 4 4 C 1.52997 * 109.47507 * 240.00012 * 2 1 3 5 5 C 1.50695 * 109.47420 * 119.99620 * 2 1 3 6 6 O 1.34258 * 126.53192 * 242.61934 * 5 2 1 7 7 C 1.34043 * 108.22941 * 179.97438 * 6 5 2 8 8 N 1.29932 * 109.24480 * 359.74676 * 7 6 5 9 9 C 1.36069 * 108.47953 * 0.40759 * 8 7 6 10 10 C 1.47414 * 126.45403 * 179.86478 * 9 8 7 11 11 O 1.21615 * 119.99746 * 255.91076 * 10 9 8 12 12 N 1.34773 * 120.00272 * 75.90274 * 10 9 8 13 13 C 1.46591 * 119.75650 * 355.06113 * 12 10 9 14 14 C 1.53887 * 110.71939 * 228.01588 * 13 12 10 15 15 C 1.51990 * 107.28845 * 308.18926 * 14 13 12 16 16 H 1.08997 * 111.56975 * 303.13256 * 15 14 13 17 17 C 1.53706 * 114.99457 * 175.42138 * 15 14 13 18 18 C 1.55296 * 101.81340 * 206.54980 * 17 15 14 19 19 N 1.48153 * 107.04568 * 22.44776 * 18 17 15 20 20 C 1.36933 * 126.39991 * 185.02434 * 19 18 17 21 21 H 1.08007 * 119.99874 * 179.97438 * 20 19 18 22 22 C 1.38810 * 119.99929 * 359.97058 * 20 19 18 23 23 N 1.31615 * 120.00201 * 0.02562 * 22 20 19 24 24 Si 1.86808 * 119.99964 * 180.02562 * 22 20 19 25 25 H 1.48492 * 109.47153 * 59.99585 * 24 22 20 26 26 H 1.48499 * 109.46929 * 180.02562 * 24 22 20 27 27 H 1.48506 * 109.46428 * 299.99584 * 24 22 20 28 28 C 1.45506 * 107.20251 * 4.99826 * 19 18 17 29 29 H 1.09003 * 109.56797 * 85.84754 * 28 19 18 30 30 C 1.47798 * 119.75816 * 175.32764 * 12 10 9 31 31 H 1.08996 * 109.47199 * 294.84736 * 1 2 3 32 32 H 1.09006 * 109.47077 * 54.84882 * 1 2 3 33 33 H 1.08998 * 109.47052 * 174.84726 * 1 2 3 34 34 H 1.09003 * 109.46497 * 180.02562 * 3 2 1 35 35 H 1.09000 * 109.46804 * 299.99669 * 3 2 1 36 36 H 1.08993 * 109.47047 * 60.00112 * 3 2 1 37 37 H 1.09001 * 109.46810 * 306.65064 * 4 2 1 38 38 H 1.08999 * 109.47353 * 66.65160 * 4 2 1 39 39 H 1.08998 * 109.47639 * 186.65212 * 4 2 1 40 40 H 1.08001 * 125.38103 * 179.97438 * 7 6 5 41 41 H 1.09002 * 109.22920 * 348.32841 * 13 12 10 42 42 H 1.09003 * 109.23667 * 107.69508 * 13 12 10 43 43 H 1.08992 * 109.89956 * 188.74079 * 14 13 12 44 44 H 1.09005 * 109.95312 * 67.66678 * 14 13 12 45 45 H 1.08998 * 110.95468 * 88.41853 * 17 15 14 46 46 H 1.09000 * 110.98792 * 324.69865 * 17 15 14 47 47 H 1.08995 * 109.91971 * 263.09794 * 18 17 15 48 48 H 1.09008 * 110.08545 * 141.88498 * 18 17 15 49 49 H 0.97003 * 120.00520 * 180.02562 * 23 22 20 50 50 H 1.09004 * 110.06528 * 247.69392 * 30 12 10 51 51 H 1.09010 * 110.06334 * 9.25036 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 2.0324 -0.7103 1.2304 6 8 2.7666 -0.1747 2.2187 7 6 3.0078 -1.1303 3.1271 8 7 2.4468 -2.2376 2.7431 9 6 1.8277 -2.0169 1.5517 10 6 1.0721 -3.0052 0.7609 11 8 1.5685 -3.4942 -0.2358 12 7 -0.1689 -3.3670 1.1426 13 6 -0.7201 -2.8581 2.4020 14 6 -1.3336 -4.0015 3.2292 15 6 -2.2943 -4.7511 2.3208 16 1 -3.0558 -4.0887 1.9090 17 6 -2.9289 -6.0061 2.9410 18 6 -3.2318 -6.8642 1.6825 19 7 -2.3289 -6.3917 0.6071 20 6 -2.3293 -6.8103 -0.6967 21 1 -1.6213 -6.3936 -1.3978 22 6 -3.2397 -7.7701 -1.1171 23 7 -4.1027 -8.2775 -0.2628 24 14 -3.2399 -8.3417 -2.8956 25 1 -1.9179 -8.9318 -3.2260 26 1 -4.3005 -9.3632 -3.0871 27 1 -3.5019 -7.1836 -3.7875 28 6 -1.4419 -5.3993 1.1950 29 1 -0.5837 -5.8979 1.6456 30 6 -0.9617 -4.2786 0.2912 31 1 -0.3633 0.4318 0.9325 32 1 -0.3633 0.5917 -0.8403 33 1 -0.3633 -1.0235 -0.0923 34 1 3.1300 1.4425 -0.0005 35 1 1.6766 1.9564 -0.8900 36 1 1.6766 1.9564 0.8899 37 1 1.5828 -1.7088 -1.3107 38 1 1.7772 -0.1433 -2.1352 39 1 3.1235 -0.8255 -1.1917 40 1 3.5755 -0.9997 4.0365 41 1 0.0761 -2.3859 2.9775 42 1 -1.4911 -2.1191 2.1839 43 1 -1.8734 -3.5931 4.0835 44 1 -0.5482 -4.6740 3.5741 45 1 -3.8469 -5.7565 3.4729 46 1 -2.2249 -6.5147 3.5996 47 1 -4.2705 -6.7284 1.3816 48 1 -3.0405 -7.9167 1.8922 49 1 -4.7387 -8.9486 -0.5564 50 1 -1.8146 -3.7479 -0.1320 51 1 -0.3379 -4.6825 -0.5064 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042306238.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:29:03 Heat of formation + Delta-G solvation = 17.483284 kcal Electronic energy + Delta-G solvation = -32772.884526 eV Core-core repulsion = 28674.795878 eV Total energy + Delta-G solvation = -4098.088648 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -43.66166 -40.10106 -38.29203 -37.15141 -35.40937 -34.89522 -32.88122 -31.25470 -30.30128 -29.12716 -28.44448 -27.66220 -27.48442 -25.02815 -24.54059 -23.19177 -22.82005 -22.22344 -20.53720 -20.03975 -19.57074 -19.17546 -17.70065 -17.02695 -16.65848 -16.21485 -15.82284 -15.52488 -15.05361 -14.78434 -14.47748 -14.30924 -14.23604 -13.88358 -13.80568 -13.57385 -13.30048 -12.95906 -12.74761 -12.52597 -12.51954 -12.24357 -11.94403 -11.91008 -11.85866 -11.56470 -11.47237 -11.33838 -11.24834 -11.16534 -10.89712 -10.79174 -10.70841 -10.70000 -10.16113 -10.00148 -9.93013 -9.83037 -9.62529 -9.46666 -9.03008 -8.60214 -8.44793 -6.83331 -5.69500 -3.03248 1.12039 2.17665 2.34969 2.58896 3.07130 3.44133 3.48386 3.49853 3.93603 4.24224 4.40297 4.52940 4.56755 4.71165 4.80905 4.96044 5.03288 5.15768 5.24797 5.33883 5.36981 5.41317 5.42773 5.48351 5.53294 5.60291 5.63281 5.68020 5.71038 5.72232 5.80156 5.84514 5.88562 5.92402 5.99314 6.05551 6.10107 6.14770 6.20029 6.22955 6.37779 6.50915 6.58900 6.70846 6.76909 7.08035 7.34959 7.47821 7.57642 7.63055 7.83296 8.19393 8.25889 9.21243 9.84270 10.51234 11.42758 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014777 B = 0.003323 C = 0.002941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1894.350814 B = 8423.463866 C = 9519.768582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.016 3.984 3 C -0.142 4.142 4 C -0.153 4.153 5 C 0.020 3.980 6 O -0.196 6.196 7 C 0.167 3.833 8 N -0.456 5.456 9 C -0.047 4.047 10 C 0.602 3.398 11 O -0.522 6.522 12 N -0.590 5.590 13 C 0.112 3.888 14 C -0.116 4.116 15 C -0.113 4.113 16 H 0.077 0.923 17 C -0.138 4.138 18 C 0.178 3.822 19 N -0.591 5.591 20 C -0.229 4.229 21 H 0.079 0.921 22 C -0.005 4.005 23 N -0.922 5.922 24 Si 0.910 3.090 25 H -0.284 1.284 26 H -0.291 1.291 27 H -0.284 1.284 28 C 0.157 3.843 29 H 0.025 0.975 30 C 0.117 3.883 31 H 0.060 0.940 32 H 0.074 0.926 33 H 0.066 0.934 34 H 0.061 0.939 35 H 0.068 0.932 36 H 0.061 0.939 37 H 0.084 0.916 38 H 0.069 0.931 39 H 0.059 0.941 40 H 0.254 0.746 41 H 0.078 0.922 42 H 0.063 0.937 43 H 0.072 0.928 44 H 0.069 0.931 45 H 0.059 0.941 46 H 0.056 0.944 47 H 0.055 0.945 48 H 0.038 0.962 49 H 0.253 0.747 50 H 0.074 0.926 51 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.782 20.897 7.877 24.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.015 3.985 3 C -0.199 4.199 4 C -0.210 4.210 5 C -0.035 4.035 6 O -0.082 6.082 7 C -0.061 4.061 8 N -0.185 5.185 9 C -0.168 4.168 10 C 0.387 3.613 11 O -0.398 6.398 12 N -0.322 5.322 13 C -0.012 4.012 14 C -0.155 4.155 15 C -0.133 4.133 16 H 0.095 0.905 17 C -0.176 4.176 18 C 0.053 3.947 19 N -0.317 5.317 20 C -0.357 4.357 21 H 0.097 0.903 22 C -0.202 4.202 23 N -0.569 5.569 24 Si 0.740 3.260 25 H -0.211 1.211 26 H -0.216 1.216 27 H -0.211 1.211 28 C 0.047 3.953 29 H 0.043 0.957 30 C -0.005 4.005 31 H 0.080 0.920 32 H 0.093 0.907 33 H 0.085 0.915 34 H 0.080 0.920 35 H 0.087 0.913 36 H 0.080 0.920 37 H 0.103 0.897 38 H 0.088 0.912 39 H 0.078 0.922 40 H 0.269 0.731 41 H 0.096 0.904 42 H 0.081 0.919 43 H 0.091 0.909 44 H 0.088 0.912 45 H 0.078 0.922 46 H 0.075 0.925 47 H 0.074 0.926 48 H 0.056 0.944 49 H 0.063 0.937 50 H 0.092 0.908 51 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 9.910 19.893 7.519 23.462 hybrid contribution 0.131 0.169 -0.835 0.862 sum 10.042 20.062 6.685 23.409 Atomic orbital electron populations 1.21997 0.91904 1.03486 1.02817 1.19285 0.96169 0.95195 0.87840 1.21882 1.01611 0.93754 1.02683 1.22159 1.01960 1.02251 0.94665 1.23527 0.96092 0.92328 0.91564 1.84322 1.55063 1.41132 1.27648 1.28046 1.01284 0.80871 0.95855 1.70875 1.10924 1.26692 1.10026 1.21388 1.06170 0.93957 0.95258 1.16815 0.80777 0.80000 0.83695 1.90801 1.68442 1.53642 1.26905 1.48163 1.14733 1.47072 1.22269 1.21702 0.98481 0.96434 0.84542 1.21763 0.98941 0.97166 0.97616 1.22288 0.97267 0.96586 0.97180 0.90460 1.22722 0.99369 0.96406 0.99097 1.21541 0.94799 0.94865 0.83452 1.44158 1.37309 1.43352 1.06842 1.18999 1.14474 1.18082 0.84134 0.90316 1.24772 0.98246 0.99188 0.97968 1.69932 1.22320 1.31726 1.32938 0.86229 0.77185 0.78208 0.84363 1.21099 1.21642 1.21106 1.20979 0.93108 0.89183 0.91982 0.95737 1.21814 0.94725 0.90286 0.93669 0.92042 0.90675 0.91522 0.92038 0.91306 0.92030 0.89675 0.91217 0.92210 0.73063 0.90404 0.91899 0.90931 0.91183 0.92241 0.92541 0.92643 0.94410 0.93723 0.90771 0.88730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.39 8.30 37.16 0.31 -1.08 16 2 C 0.02 0.16 0.80 -155.66 -0.12 0.03 16 3 C -0.14 -1.09 8.07 37.16 0.30 -0.79 16 4 C -0.15 -1.72 8.18 37.16 0.30 -1.42 16 5 C 0.02 0.24 5.73 -35.08 -0.20 0.04 16 6 O -0.20 -1.99 10.19 6.53 0.07 -1.92 16 7 C 0.17 1.53 13.19 51.96 0.69 2.21 16 8 N -0.46 -6.09 10.65 -11.48 -0.12 -6.21 16 9 C -0.05 -0.68 4.92 -83.02 -0.41 -1.09 16 10 C 0.60 10.25 5.33 -12.53 -0.07 10.18 16 11 O -0.52 -10.48 14.32 5.26 0.08 -10.40 16 12 N -0.59 -9.56 2.79 -174.01 -0.49 -10.04 16 13 C 0.11 1.49 6.20 -3.53 -0.02 1.47 16 14 C -0.12 -1.61 5.72 -26.78 -0.15 -1.77 16 15 C -0.11 -1.95 2.61 -89.51 -0.23 -2.19 16 16 H 0.08 1.35 8.13 -51.93 -0.42 0.92 16 17 C -0.14 -2.53 6.54 -25.15 -0.16 -2.70 16 18 C 0.18 4.28 5.45 -1.92 -0.01 4.27 16 19 N -0.59 -14.98 3.35 -162.91 -0.55 -15.52 16 20 C -0.23 -6.34 9.88 -15.06 -0.15 -6.49 16 21 H 0.08 2.13 7.41 -52.48 -0.39 1.74 16 22 C -0.01 -0.15 5.49 -17.43 -0.10 -0.25 16 23 N -0.92 -27.02 10.43 55.49 0.58 -26.44 16 24 Si 0.91 22.33 29.55 -169.99 -5.02 17.31 16 25 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 26 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 27 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 28 C 0.16 3.27 2.77 -67.83 -0.19 3.08 16 29 H 0.03 0.57 7.90 -51.93 -0.41 0.16 16 30 C 0.12 2.22 5.70 -3.95 -0.02 2.20 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.07 0.78 6.67 -51.93 -0.35 0.43 16 34 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.08 1.22 5.08 -51.93 -0.26 0.95 16 38 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.25 0.91 8.06 -52.49 -0.42 0.48 16 41 H 0.08 1.00 5.81 -51.93 -0.30 0.69 16 42 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 44 H 0.07 1.05 7.97 -51.93 -0.41 0.63 16 45 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 46 H 0.06 1.00 8.12 -51.93 -0.42 0.57 16 47 H 0.06 1.47 7.21 -51.93 -0.37 1.09 16 48 H 0.04 1.01 7.76 -51.92 -0.40 0.60 16 49 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 50 H 0.07 1.38 8.14 -51.93 -0.42 0.95 16 51 H 0.09 2.01 6.74 -51.92 -0.35 1.66 16 LS Contribution 392.22 15.07 5.91 5.91 Total: -1.00 -33.40 392.22 -8.09 -41.49 By element: Atomic # 1 Polarization: 8.43 SS G_CDS: -8.30 Total: 0.12 kcal Atomic # 6 Polarization: 5.95 SS G_CDS: -0.24 Total: 5.71 kcal Atomic # 7 Polarization: -57.64 SS G_CDS: -0.57 Total: -58.22 kcal Atomic # 8 Polarization: -12.47 SS G_CDS: 0.14 Total: -12.33 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -33.40 -8.09 -41.49 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042306238.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.971 kcal (2) G-P(sol) polarization free energy of solvation -33.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.487 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds