Wall clock time and date at job start Wed Apr 1 2020 05:29:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53009 * 109.46899 * 2 1 4 4 C 1.52997 * 109.47507 * 240.00012 * 2 1 3 5 5 C 1.50695 * 109.47420 * 119.99620 * 2 1 3 6 6 O 1.34258 * 126.53192 * 242.61934 * 5 2 1 7 7 C 1.34043 * 108.22941 * 179.97438 * 6 5 2 8 8 N 1.29932 * 109.24480 * 359.74676 * 7 6 5 9 9 C 1.36069 * 108.47953 * 0.40759 * 8 7 6 10 10 C 1.47414 * 126.45403 * 179.86478 * 9 8 7 11 11 O 1.21615 * 119.99746 * 255.91076 * 10 9 8 12 12 N 1.34773 * 120.00272 * 75.90274 * 10 9 8 13 13 C 1.46591 * 119.75650 * 355.06113 * 12 10 9 14 14 C 1.53887 * 110.71939 * 228.01588 * 13 12 10 15 15 C 1.51990 * 107.28845 * 308.18926 * 14 13 12 16 16 H 1.08997 * 111.56975 * 303.13256 * 15 14 13 17 17 C 1.53706 * 114.99457 * 175.42138 * 15 14 13 18 18 C 1.55296 * 101.81340 * 206.54980 * 17 15 14 19 19 N 1.48153 * 107.04568 * 22.44776 * 18 17 15 20 20 C 1.36933 * 126.39991 * 185.02434 * 19 18 17 21 21 H 1.08007 * 119.99874 * 179.97438 * 20 19 18 22 22 C 1.38810 * 119.99929 * 359.97058 * 20 19 18 23 23 N 1.31615 * 120.00201 * 0.02562 * 22 20 19 24 24 Si 1.86808 * 119.99964 * 180.02562 * 22 20 19 25 25 H 1.48492 * 109.47153 * 59.99585 * 24 22 20 26 26 H 1.48499 * 109.46929 * 180.02562 * 24 22 20 27 27 H 1.48506 * 109.46428 * 299.99584 * 24 22 20 28 28 C 1.45506 * 107.20251 * 4.99826 * 19 18 17 29 29 H 1.09003 * 109.56797 * 85.84754 * 28 19 18 30 30 C 1.47798 * 119.75816 * 175.32764 * 12 10 9 31 31 H 1.08996 * 109.47199 * 294.84736 * 1 2 3 32 32 H 1.09006 * 109.47077 * 54.84882 * 1 2 3 33 33 H 1.08998 * 109.47052 * 174.84726 * 1 2 3 34 34 H 1.09003 * 109.46497 * 180.02562 * 3 2 1 35 35 H 1.09000 * 109.46804 * 299.99669 * 3 2 1 36 36 H 1.08993 * 109.47047 * 60.00112 * 3 2 1 37 37 H 1.09001 * 109.46810 * 306.65064 * 4 2 1 38 38 H 1.08999 * 109.47353 * 66.65160 * 4 2 1 39 39 H 1.08998 * 109.47639 * 186.65212 * 4 2 1 40 40 H 1.08001 * 125.38103 * 179.97438 * 7 6 5 41 41 H 1.09002 * 109.22920 * 348.32841 * 13 12 10 42 42 H 1.09003 * 109.23667 * 107.69508 * 13 12 10 43 43 H 1.08992 * 109.89956 * 188.74079 * 14 13 12 44 44 H 1.09005 * 109.95312 * 67.66678 * 14 13 12 45 45 H 1.08998 * 110.95468 * 88.41853 * 17 15 14 46 46 H 1.09000 * 110.98792 * 324.69865 * 17 15 14 47 47 H 1.08995 * 109.91971 * 263.09794 * 18 17 15 48 48 H 1.09008 * 110.08545 * 141.88498 * 18 17 15 49 49 H 0.97003 * 120.00520 * 180.02562 * 23 22 20 50 50 H 1.09004 * 110.06528 * 247.69392 * 30 12 10 51 51 H 1.09010 * 110.06334 * 9.25036 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 2.0324 -0.7103 1.2304 6 8 2.7666 -0.1747 2.2187 7 6 3.0078 -1.1303 3.1271 8 7 2.4468 -2.2376 2.7431 9 6 1.8277 -2.0169 1.5517 10 6 1.0721 -3.0052 0.7609 11 8 1.5685 -3.4942 -0.2358 12 7 -0.1689 -3.3670 1.1426 13 6 -0.7201 -2.8581 2.4020 14 6 -1.3336 -4.0015 3.2292 15 6 -2.2943 -4.7511 2.3208 16 1 -3.0558 -4.0887 1.9090 17 6 -2.9289 -6.0061 2.9410 18 6 -3.2318 -6.8642 1.6825 19 7 -2.3289 -6.3917 0.6071 20 6 -2.3293 -6.8103 -0.6967 21 1 -1.6213 -6.3936 -1.3978 22 6 -3.2397 -7.7701 -1.1171 23 7 -4.1027 -8.2775 -0.2628 24 14 -3.2399 -8.3417 -2.8956 25 1 -1.9179 -8.9318 -3.2260 26 1 -4.3005 -9.3632 -3.0871 27 1 -3.5019 -7.1836 -3.7875 28 6 -1.4419 -5.3993 1.1950 29 1 -0.5837 -5.8979 1.6456 30 6 -0.9617 -4.2786 0.2912 31 1 -0.3633 0.4318 0.9325 32 1 -0.3633 0.5917 -0.8403 33 1 -0.3633 -1.0235 -0.0923 34 1 3.1300 1.4425 -0.0005 35 1 1.6766 1.9564 -0.8900 36 1 1.6766 1.9564 0.8899 37 1 1.5828 -1.7088 -1.3107 38 1 1.7772 -0.1433 -2.1352 39 1 3.1235 -0.8255 -1.1917 40 1 3.5755 -0.9997 4.0365 41 1 0.0761 -2.3859 2.9775 42 1 -1.4911 -2.1191 2.1839 43 1 -1.8734 -3.5931 4.0835 44 1 -0.5482 -4.6740 3.5741 45 1 -3.8469 -5.7565 3.4729 46 1 -2.2249 -6.5147 3.5996 47 1 -4.2705 -6.7284 1.3816 48 1 -3.0405 -7.9167 1.8922 49 1 -4.7387 -8.9486 -0.5564 50 1 -1.8146 -3.7479 -0.1320 51 1 -0.3379 -4.6825 -0.5064 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042306238.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:29:02 Heat of formation + Delta-G solvation = -5.472732 kcal Electronic energy + Delta-G solvation = -32773.879973 eV Core-core repulsion = 28674.795878 eV Total energy + Delta-G solvation = -4099.084095 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -44.51562 -41.48098 -39.77632 -37.96721 -36.93061 -35.84157 -34.68188 -32.94100 -31.54118 -30.45800 -30.09071 -28.31459 -28.30679 -26.58177 -26.21872 -24.20855 -23.85207 -23.60721 -21.83408 -21.66221 -20.87230 -20.26178 -18.92490 -18.46296 -17.97690 -17.35290 -16.93869 -16.83353 -16.50778 -16.10955 -15.84045 -15.67310 -15.38259 -15.06369 -15.03175 -14.77155 -14.60565 -14.43039 -14.02078 -13.84907 -13.61237 -13.34210 -13.17605 -13.13851 -13.08305 -12.74994 -12.69765 -12.64286 -12.60098 -12.41051 -12.15829 -12.08340 -12.03821 -11.97791 -11.77935 -11.60961 -11.55849 -11.41045 -11.22631 -11.06540 -10.72979 -9.94718 -9.79323 -8.92550 -7.86738 -5.22103 0.25609 1.16038 1.43464 1.46426 1.46586 1.52197 1.53252 1.87999 2.48771 3.08987 3.31275 3.36561 3.46521 3.63954 3.73732 3.82459 3.88803 3.91503 3.94601 4.00389 4.22658 4.24746 4.27204 4.45494 4.48187 4.49740 4.58514 4.64005 4.67994 4.73990 4.75858 4.77680 4.83085 4.86654 4.89412 4.90189 4.98671 5.05658 5.11531 5.13047 5.19126 5.22747 5.25538 5.31887 5.37661 5.46742 5.55689 5.64842 5.77048 6.17682 6.20747 6.51524 6.90503 7.07052 7.75011 8.42357 9.24051 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014777 B = 0.003323 C = 0.002941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1894.350814 B = 8423.463866 C = 9519.768582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.014 3.986 3 C -0.135 4.135 4 C -0.151 4.151 5 C 0.029 3.971 6 O -0.189 6.189 7 C 0.198 3.802 8 N -0.499 5.499 9 C -0.075 4.075 10 C 0.601 3.399 11 O -0.567 6.567 12 N -0.587 5.587 13 C 0.110 3.890 14 C -0.106 4.106 15 C -0.095 4.095 16 H 0.083 0.917 17 C -0.122 4.122 18 C 0.182 3.818 19 N -0.612 5.612 20 C -0.240 4.240 21 H 0.076 0.924 22 C -0.060 4.060 23 N -0.948 5.948 24 Si 0.972 3.028 25 H -0.284 1.284 26 H -0.290 1.290 27 H -0.274 1.274 28 C 0.149 3.851 29 H 0.001 0.999 30 C 0.131 3.869 31 H 0.074 0.926 32 H 0.092 0.908 33 H 0.039 0.961 34 H 0.060 0.940 35 H 0.084 0.916 36 H 0.071 0.929 37 H 0.049 0.951 38 H 0.089 0.911 39 H 0.051 0.949 40 H 0.306 0.694 41 H 0.091 0.909 42 H 0.087 0.913 43 H 0.114 0.886 44 H 0.059 0.941 45 H 0.089 0.911 46 H 0.066 0.934 47 H 0.026 0.974 48 H -0.001 1.001 49 H 0.248 0.752 50 H 0.078 0.922 51 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.414 24.595 9.763 28.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.013 3.987 3 C -0.192 4.192 4 C -0.208 4.208 5 C -0.027 4.027 6 O -0.075 6.075 7 C -0.030 4.030 8 N -0.228 5.228 9 C -0.194 4.194 10 C 0.388 3.612 11 O -0.445 6.445 12 N -0.319 5.319 13 C -0.011 4.011 14 C -0.144 4.144 15 C -0.115 4.115 16 H 0.101 0.899 17 C -0.160 4.160 18 C 0.057 3.943 19 N -0.337 5.337 20 C -0.369 4.369 21 H 0.093 0.907 22 C -0.253 4.253 23 N -0.597 5.597 24 Si 0.800 3.200 25 H -0.210 1.210 26 H -0.216 1.216 27 H -0.200 1.200 28 C 0.041 3.959 29 H 0.018 0.982 30 C 0.008 3.992 31 H 0.093 0.907 32 H 0.110 0.890 33 H 0.058 0.942 34 H 0.079 0.921 35 H 0.103 0.897 36 H 0.090 0.910 37 H 0.068 0.932 38 H 0.108 0.892 39 H 0.071 0.929 40 H 0.321 0.679 41 H 0.109 0.891 42 H 0.105 0.895 43 H 0.132 0.868 44 H 0.077 0.923 45 H 0.108 0.892 46 H 0.084 0.916 47 H 0.044 0.956 48 H 0.017 0.983 49 H 0.057 0.943 50 H 0.096 0.904 51 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 10.550 23.622 9.439 27.539 hybrid contribution 0.046 -0.985 -1.384 1.699 sum 10.596 22.636 8.056 26.260 Atomic orbital electron populations 1.21989 0.91451 1.02196 1.04312 1.19396 0.96534 0.96433 0.86338 1.21852 1.01561 0.91796 1.04029 1.22107 1.01186 1.00934 0.96588 1.23732 0.95330 0.91581 0.92035 1.84370 1.54592 1.41091 1.27428 1.29212 0.98684 0.79222 0.95882 1.70829 1.12884 1.28878 1.10227 1.20980 1.07899 0.94222 0.96347 1.17235 0.80733 0.79915 0.83315 1.90768 1.69433 1.55378 1.28958 1.48165 1.14519 1.46310 1.22905 1.21926 0.99468 0.96617 0.83102 1.21738 0.97951 0.96697 0.98049 1.22204 0.97088 0.96192 0.95975 0.89908 1.22601 1.01145 0.95705 0.96546 1.21360 0.93087 0.94069 0.85775 1.44420 1.38127 1.44624 1.06507 1.19285 1.14127 1.17974 0.85505 0.90655 1.25549 0.98301 0.99623 1.01809 1.70138 1.22906 1.32164 1.34448 0.85256 0.76892 0.77815 0.80038 1.21002 1.21611 1.20009 1.21081 0.92441 0.88914 0.93499 0.98202 1.21387 0.94395 0.90318 0.93054 0.90682 0.88958 0.94220 0.92077 0.89683 0.90992 0.93221 0.89172 0.92935 0.67897 0.89092 0.89475 0.86812 0.92258 0.89243 0.91569 0.95554 0.98317 0.94306 0.90419 0.92075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.46 8.30 71.98 0.60 -1.86 16 2 C 0.01 0.25 0.80 -52.93 -0.04 0.21 16 3 C -0.14 -1.64 8.07 71.99 0.58 -1.06 16 4 C -0.15 -3.38 8.18 71.98 0.59 -2.79 16 5 C 0.03 0.64 5.73 25.19 0.14 0.79 16 6 O -0.19 -3.19 10.19 0.44 0.00 -3.19 16 7 C 0.20 2.87 13.19 130.52 1.72 4.59 16 8 N -0.50 -12.35 10.65 -305.16 -3.25 -15.60 16 9 C -0.08 -2.11 4.92 40.41 0.20 -1.91 16 10 C 0.60 21.05 5.33 86.66 0.46 21.51 16 11 O -0.57 -24.29 14.32 -4.08 -0.06 -24.35 16 12 N -0.59 -19.20 2.79 -822.70 -2.29 -21.50 16 13 C 0.11 2.70 6.20 86.66 0.54 3.24 16 14 C -0.11 -2.64 5.72 30.56 0.17 -2.46 16 15 C -0.09 -3.14 2.61 -10.07 -0.03 -3.17 16 16 H 0.08 2.70 8.13 -2.39 -0.02 2.69 16 17 C -0.12 -4.37 6.54 31.62 0.21 -4.16 16 18 C 0.18 9.09 5.45 86.85 0.47 9.57 16 19 N -0.61 -32.39 3.35 -669.33 -2.24 -34.63 16 20 C -0.24 -13.93 9.88 84.03 0.83 -13.10 16 21 H 0.08 4.30 7.41 -2.91 -0.02 4.28 16 22 C -0.06 -3.48 5.49 84.86 0.47 -3.02 16 23 N -0.95 -57.92 10.43 21.65 0.23 -57.69 16 24 Si 0.97 47.38 29.55 68.60 2.03 49.41 16 25 H -0.28 -13.67 7.11 99.48 0.71 -12.96 16 26 H -0.29 -14.03 7.11 99.48 0.71 -13.33 16 27 H -0.27 -12.81 7.11 99.48 0.71 -12.11 16 28 C 0.15 6.41 2.77 45.59 0.13 6.53 16 29 H 0.00 0.03 7.90 -2.39 -0.02 0.01 16 30 C 0.13 5.22 5.70 85.73 0.49 5.71 16 31 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.09 1.24 8.14 -2.38 -0.02 1.22 16 33 H 0.04 0.90 6.67 -2.39 -0.02 0.89 16 34 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 36 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.05 1.49 5.08 -2.39 -0.01 1.48 16 38 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 39 H 0.05 1.20 8.14 -2.39 -0.02 1.19 16 40 H 0.31 0.50 8.06 -2.91 -0.02 0.48 16 41 H 0.09 2.08 5.81 -2.39 -0.01 2.06 16 42 H 0.09 1.75 8.14 -2.39 -0.02 1.74 16 43 H 0.11 2.02 8.14 -2.39 -0.02 2.00 16 44 H 0.06 1.64 7.97 -2.38 -0.02 1.63 16 45 H 0.09 2.71 8.14 -2.39 -0.02 2.69 16 46 H 0.07 2.25 8.12 -2.39 -0.02 2.23 16 47 H 0.03 1.45 7.21 -2.39 -0.02 1.43 16 48 H 0.00 -0.08 7.76 -2.38 -0.02 -0.10 16 49 H 0.25 14.73 8.31 -92.71 -0.77 13.96 16 50 H 0.08 2.99 8.14 -2.39 -0.02 2.97 16 51 H 0.06 2.81 6.74 -2.38 -0.02 2.80 16 Total: -1.00 -79.75 392.22 2.86 -76.88 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: 0.92 Total: 12.05 kcal Atomic # 6 Polarization: 11.08 SS G_CDS: 7.53 Total: 18.61 kcal Atomic # 7 Polarization: -121.86 SS G_CDS: -7.56 Total: -129.42 kcal Atomic # 8 Polarization: -27.49 SS G_CDS: -0.05 Total: -27.54 kcal Atomic # 14 Polarization: 47.38 SS G_CDS: 2.03 Total: 49.41 kcal Total: -79.75 2.86 -76.88 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042306238.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.410 kcal (2) G-P(sol) polarization free energy of solvation -79.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds