Wall clock time and date at job start Wed Apr 1 2020 04:39:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47251 * 2 1 4 4 C 1.50698 * 109.47061 * 179.97438 * 3 2 1 5 5 C 1.38031 * 119.50956 * 125.00193 * 4 3 2 6 6 C 1.39929 * 119.12672 * 180.02562 * 5 4 3 7 7 C 1.48159 * 120.88830 * 179.97438 * 6 5 4 8 8 O 1.21515 * 119.99952 * 320.31474 * 7 6 5 9 9 N 1.34776 * 120.00414 * 140.31354 * 7 6 5 10 10 C 1.46932 * 120.62936 * 354.20447 * 9 7 6 11 11 C 1.53185 * 108.76331 * 233.59277 * 10 9 7 12 12 C 1.53041 * 109.31454 * 305.34116 * 11 10 9 13 13 H 1.08996 * 109.45818 * 301.37261 * 12 11 10 14 14 N 1.46505 * 109.45822 * 181.40086 * 12 11 10 15 15 C 1.36939 * 119.99932 * 84.97716 * 14 12 11 16 16 H 1.08000 * 119.99971 * 359.72135 * 15 14 12 17 17 C 1.38811 * 119.99836 * 179.97438 * 15 14 12 18 18 N 1.31615 * 119.99824 * 179.97438 * 17 15 14 19 19 Si 1.86804 * 119.99892 * 359.97438 * 17 15 14 20 20 H 1.48496 * 109.46834 * 90.00219 * 19 17 15 21 21 H 1.48506 * 109.46677 * 210.00122 * 19 17 15 22 22 H 1.48496 * 109.47182 * 329.99721 * 19 17 15 23 23 C 1.53043 * 109.52523 * 61.38664 * 12 11 10 24 24 C 1.46926 * 120.63473 * 174.17779 * 9 7 6 25 25 H 1.08999 * 109.58773 * 6.62877 * 24 9 7 26 26 C 1.52992 * 109.70517 * 246.27368 * 24 9 7 27 27 C 1.39606 * 118.21916 * 0.24651 * 6 5 4 28 28 C 1.38851 * 118.95166 * 359.50832 * 27 6 5 29 29 O 1.35680 * 119.62715 * 180.25001 * 28 27 6 30 30 N 1.31880 * 119.51681 * 305.02162 * 4 3 2 31 31 H 1.09002 * 109.47005 * 300.00175 * 1 2 3 32 32 H 1.09000 * 109.46788 * 60.00054 * 1 2 3 33 33 H 1.08994 * 109.46872 * 179.97438 * 1 2 3 34 34 H 1.09002 * 109.47005 * 239.99825 * 2 1 3 35 35 H 1.09000 * 109.46788 * 119.99946 * 2 1 3 36 36 H 1.09002 * 109.47259 * 59.99980 * 3 2 1 37 37 H 1.08995 * 109.47132 * 300.00200 * 3 2 1 38 38 H 1.07993 * 120.43280 * 359.97438 * 5 4 3 39 39 H 1.08999 * 109.58286 * 353.37326 * 10 9 7 40 40 H 1.08996 * 109.58618 * 113.79315 * 10 9 7 41 41 H 1.08999 * 109.48618 * 185.39757 * 11 10 9 42 42 H 1.09004 * 109.51161 * 65.30365 * 11 10 9 43 43 H 0.96996 * 119.99701 * 264.97014 * 14 12 11 44 44 H 0.97002 * 119.99723 * 179.97438 * 18 17 15 45 45 H 1.09003 * 109.49468 * 58.58174 * 23 12 11 46 46 H 1.08996 * 109.49747 * 178.67530 * 23 12 11 47 47 H 1.09007 * 109.47540 * 300.63745 * 26 24 9 48 48 H 1.08999 * 109.47510 * 60.63897 * 26 24 9 49 49 H 1.09000 * 109.47201 * 180.63832 * 26 24 9 50 50 H 1.08004 * 120.52810 * 179.72774 * 27 6 5 51 51 H 0.96702 * 114.00072 * 270.25241 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5470 1.4424 0.0006 5 6 4.2274 2.1313 -0.9832 6 6 5.6266 2.1255 -0.9752 7 6 6.3962 2.8512 -2.0126 8 8 6.0196 2.8394 -3.1679 9 7 7.5139 3.5244 -1.6751 10 6 7.9130 3.6545 -0.2670 11 6 8.1187 5.1386 0.0517 12 6 9.1175 5.7361 -0.9421 13 1 10.0612 5.1944 -0.8785 14 7 9.3420 7.1474 -0.6195 15 6 10.2723 7.4946 0.3236 16 1 10.8371 6.7277 0.8328 17 6 10.4854 8.8318 0.6289 18 7 11.3791 9.1654 1.5357 19 14 9.5038 10.1578 -0.2473 20 1 8.2609 10.4388 0.5151 21 1 10.3181 11.3962 -0.3405 22 1 9.1524 9.6926 -1.6130 23 6 8.5578 5.6203 -2.3618 24 6 8.3568 4.1417 -2.7082 25 1 7.8669 4.0570 -3.6782 26 6 9.7139 3.4370 -2.7557 27 6 6.2781 1.4127 0.0330 28 6 5.5171 0.7510 0.9875 29 8 6.1361 0.0583 1.9765 30 7 4.1964 0.7840 0.9408 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0276 -0.0005 34 1 1.8933 -0.5139 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 1.6767 1.9564 0.8900 37 1 1.6767 1.9563 -0.8899 38 1 3.6868 2.6670 -1.7494 39 1 7.1302 3.2482 0.3736 40 1 8.8434 3.1121 -0.0994 41 1 8.5072 5.2425 1.0648 42 1 7.1668 5.6637 -0.0289 43 1 8.8319 7.8359 -1.0740 44 1 11.5283 10.0999 1.7487 45 1 7.6018 6.1408 -2.4195 46 1 9.2589 6.0671 -3.0668 47 1 10.2000 3.5185 -1.7834 48 1 9.5687 2.3852 -3.0022 49 1 10.3400 3.9051 -3.5152 50 1 7.3569 1.3795 0.0721 51 1 6.3154 -0.8661 1.7565 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044773145.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:39:51 Heat of formation + Delta-G solvation = -31.080102 kcal Electronic energy + Delta-G solvation = -31076.227289 eV Core-core repulsion = 26976.032774 eV Total energy + Delta-G solvation = -4100.194514 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.32826 -40.03549 -37.95001 -37.52348 -35.32350 -34.79045 -33.44452 -31.98398 -31.82977 -30.96275 -29.90590 -27.62144 -27.27222 -25.25999 -24.06844 -23.36924 -22.82462 -22.14718 -21.30974 -20.51418 -19.17872 -18.47663 -17.66235 -17.36143 -16.90408 -16.40818 -15.94170 -15.66099 -15.30400 -15.11510 -14.96771 -14.56827 -14.11395 -14.04899 -13.85376 -13.77282 -13.53194 -13.19237 -13.01707 -12.95199 -12.71908 -12.60346 -12.42193 -12.07516 -12.03958 -11.87588 -11.76002 -11.55937 -11.46147 -11.09399 -11.03854 -11.01829 -10.92543 -10.61412 -10.41842 -10.27636 -10.07537 -9.81596 -9.63833 -9.62370 -9.14243 -8.95185 -8.71084 -7.33601 -5.82180 -3.18302 0.45895 0.60578 2.49366 2.76323 3.04820 3.33952 3.37268 3.42238 3.43778 4.04474 4.10261 4.54557 4.57233 4.59162 4.67261 4.72181 4.80202 4.89102 4.99272 5.01488 5.03181 5.13717 5.19318 5.27062 5.32214 5.41181 5.43398 5.46023 5.47439 5.51674 5.58660 5.64409 5.68093 5.70846 5.73626 5.88199 5.89746 5.98271 5.98518 6.07850 6.10710 6.16986 6.28113 6.31143 6.45440 6.72499 6.87183 7.11967 7.26123 7.54628 7.92204 7.92849 8.36737 9.14673 9.87550 10.07019 11.35883 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013359 B = 0.002515 C = 0.002450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2095.419432 B =11132.207031 C =11424.358176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.116 4.116 3 C -0.070 4.070 4 C 0.154 3.846 5 C -0.130 4.130 6 C -0.058 4.058 7 C 0.559 3.441 8 O -0.534 6.534 9 N -0.590 5.590 10 C 0.095 3.905 11 C -0.151 4.151 12 C 0.183 3.817 13 H 0.061 0.939 14 N -0.748 5.748 15 C -0.245 4.245 16 H 0.090 0.910 17 C 0.005 3.995 18 N -0.932 5.932 19 Si 0.884 3.116 20 H -0.285 1.285 21 H -0.291 1.291 22 H -0.277 1.277 23 C -0.138 4.138 24 C 0.142 3.858 25 H 0.098 0.902 26 C -0.162 4.162 27 C -0.162 4.162 28 C 0.314 3.686 29 O -0.477 6.477 30 N -0.487 5.487 31 H 0.056 0.944 32 H 0.054 0.946 33 H 0.055 0.945 34 H 0.060 0.940 35 H 0.073 0.927 36 H 0.087 0.913 37 H 0.084 0.916 38 H 0.147 0.853 39 H 0.085 0.915 40 H 0.074 0.926 41 H 0.082 0.918 42 H 0.059 0.941 43 H 0.361 0.639 44 H 0.260 0.740 45 H 0.063 0.937 46 H 0.079 0.921 47 H 0.067 0.933 48 H 0.054 0.946 49 H 0.071 0.929 50 H 0.151 0.849 51 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.816 -20.966 -5.513 26.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.154 4.154 3 C -0.108 4.108 4 C 0.016 3.984 5 C -0.151 4.151 6 C -0.069 4.069 7 C 0.347 3.653 8 O -0.412 6.412 9 N -0.322 5.322 10 C -0.028 4.028 11 C -0.192 4.192 12 C 0.074 3.926 13 H 0.079 0.921 14 N -0.389 5.389 15 C -0.375 4.375 16 H 0.108 0.892 17 C -0.191 4.191 18 N -0.580 5.580 19 Si 0.714 3.286 20 H -0.211 1.211 21 H -0.217 1.217 22 H -0.203 1.203 23 C -0.177 4.177 24 C 0.039 3.961 25 H 0.116 0.884 26 C -0.220 4.220 27 C -0.184 4.184 28 C 0.135 3.865 29 O -0.284 6.284 30 N -0.207 5.207 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.079 0.921 35 H 0.092 0.908 36 H 0.105 0.895 37 H 0.102 0.898 38 H 0.165 0.835 39 H 0.103 0.897 40 H 0.092 0.908 41 H 0.101 0.899 42 H 0.077 0.923 43 H 0.193 0.807 44 H 0.070 0.930 45 H 0.081 0.919 46 H 0.097 0.903 47 H 0.086 0.914 48 H 0.073 0.927 49 H 0.090 0.910 50 H 0.169 0.831 51 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -16.207 -20.865 -4.989 26.887 hybrid contribution 0.017 1.132 -1.096 1.576 sum -16.190 -19.733 -6.085 26.240 Atomic orbital electron populations 1.21785 0.95497 1.01813 1.01927 1.21440 0.95693 0.95399 1.02866 1.20654 0.87581 0.98819 1.03778 1.20952 0.96691 0.91742 0.88988 1.22062 0.92966 1.00036 1.00038 1.20233 0.94299 0.97376 0.94975 1.18156 0.80444 0.79094 0.87651 1.90776 1.68300 1.62474 1.19650 1.48177 1.23476 1.52028 1.08509 1.22239 1.00796 0.99253 0.80483 1.22654 1.01415 0.92593 1.02563 1.20178 0.95757 0.86537 0.90172 0.92134 1.42791 1.46944 1.01166 1.48041 1.19045 1.12757 0.92935 1.12729 0.89172 1.24676 0.98807 0.96820 0.98748 1.69697 1.36383 1.16924 1.34962 0.86564 0.79941 0.82478 0.79605 1.21138 1.21730 1.20327 1.22265 1.01896 0.94267 0.99231 1.21236 0.90802 0.92435 0.91598 0.88378 1.22161 0.96326 1.00172 1.03342 1.22404 1.02283 1.00152 0.93562 1.18921 0.86648 0.93860 0.87098 1.84830 1.76944 1.27837 1.38767 1.66771 1.09943 1.19795 1.24173 0.92536 0.92667 0.92610 0.92131 0.90797 0.89479 0.89782 0.83535 0.89700 0.90820 0.89938 0.92260 0.80652 0.93024 0.91851 0.90260 0.91370 0.92738 0.90988 0.83137 0.74130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 9.91 37.16 0.37 -0.50 16 2 C -0.12 -0.82 5.79 -26.73 -0.15 -0.97 16 3 C -0.07 -0.53 5.61 -27.88 -0.16 -0.69 16 4 C 0.15 1.56 6.18 -82.65 -0.51 1.05 16 5 C -0.13 -1.40 9.36 -39.02 -0.37 -1.77 16 6 C -0.06 -0.68 5.15 -104.68 -0.54 -1.22 16 7 C 0.56 7.65 7.38 -12.19 -0.09 7.56 16 8 O -0.53 -8.72 16.37 5.35 0.09 -8.63 16 9 N -0.59 -7.65 2.68 -166.22 -0.45 -8.10 16 10 C 0.09 1.18 4.53 -3.71 -0.02 1.17 16 11 C -0.15 -2.41 5.66 -26.61 -0.15 -2.56 16 12 C 0.18 3.23 2.53 -67.88 -0.17 3.06 16 13 H 0.06 1.09 6.45 -51.93 -0.33 0.76 16 14 N -0.75 -16.86 4.92 -53.38 -0.26 -17.12 16 15 C -0.24 -6.63 10.41 -15.06 -0.16 -6.78 16 16 H 0.09 2.60 8.06 -52.49 -0.42 2.18 16 17 C 0.01 0.16 5.50 -17.43 -0.10 0.06 16 18 N -0.93 -28.72 13.97 55.49 0.78 -27.95 16 19 Si 0.88 21.81 27.73 -169.99 -4.71 17.09 16 20 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 21 H -0.29 -7.31 7.11 56.52 0.40 -6.90 16 22 H -0.28 -6.44 6.52 56.52 0.37 -6.07 16 23 C -0.14 -2.07 5.02 -26.61 -0.13 -2.20 16 24 C 0.14 1.86 3.21 -67.61 -0.22 1.64 16 25 H 0.10 1.34 7.00 -51.93 -0.36 0.98 16 26 C -0.16 -1.85 9.03 37.15 0.34 -1.51 16 27 C -0.16 -1.68 7.43 -38.84 -0.29 -1.96 16 28 C 0.31 3.32 7.74 -17.17 -0.13 3.19 16 29 O -0.48 -4.31 13.56 -18.74 -0.25 -4.57 16 30 N -0.49 -5.46 9.87 -9.60 -0.09 -5.56 16 31 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 33 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 34 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 35 H 0.07 0.60 7.94 -51.93 -0.41 0.18 16 36 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.08 0.51 7.86 -51.93 -0.41 0.10 16 38 H 0.15 1.43 7.94 -52.49 -0.42 1.02 16 39 H 0.08 0.99 4.73 -51.93 -0.25 0.75 16 40 H 0.07 0.82 7.48 -51.93 -0.39 0.43 16 41 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 42 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 43 H 0.36 8.15 5.66 -40.82 -0.23 7.92 16 44 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 45 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 46 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 47 H 0.07 0.81 5.74 -51.93 -0.30 0.51 16 48 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 49 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 50 H 0.15 1.35 6.65 -52.48 -0.35 1.00 16 51 H 0.40 1.55 9.06 45.56 0.41 1.96 16 LS Contribution 402.70 15.07 6.07 6.07 Total: -1.00 -33.85 402.70 -8.59 -42.45 By element: Atomic # 1 Polarization: 16.02 SS G_CDS: -7.28 Total: 8.74 kcal Atomic # 6 Polarization: 0.04 SS G_CDS: -2.47 Total: -2.43 kcal Atomic # 7 Polarization: -58.69 SS G_CDS: -0.03 Total: -58.72 kcal Atomic # 8 Polarization: -13.03 SS G_CDS: -0.17 Total: -13.20 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.71 Total: 17.09 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -33.85 -8.59 -42.45 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044773145.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.365 kcal (2) G-P(sol) polarization free energy of solvation -33.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds