Wall clock time and date at job start Wed Apr 1 2020 04:39:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47251 * 2 1 4 4 C 1.50698 * 109.47061 * 179.97438 * 3 2 1 5 5 C 1.38031 * 119.50956 * 125.00193 * 4 3 2 6 6 C 1.39929 * 119.12672 * 180.02562 * 5 4 3 7 7 C 1.48159 * 120.88830 * 179.97438 * 6 5 4 8 8 O 1.21515 * 119.99952 * 320.31474 * 7 6 5 9 9 N 1.34776 * 120.00414 * 140.31354 * 7 6 5 10 10 C 1.46932 * 120.62936 * 354.20447 * 9 7 6 11 11 C 1.53185 * 108.76331 * 233.59277 * 10 9 7 12 12 C 1.53041 * 109.31454 * 305.34116 * 11 10 9 13 13 H 1.08996 * 109.45818 * 301.37261 * 12 11 10 14 14 N 1.46505 * 109.45822 * 181.40086 * 12 11 10 15 15 C 1.36939 * 119.99932 * 84.97716 * 14 12 11 16 16 H 1.08000 * 119.99971 * 359.72135 * 15 14 12 17 17 C 1.38811 * 119.99836 * 179.97438 * 15 14 12 18 18 N 1.31615 * 119.99824 * 179.97438 * 17 15 14 19 19 Si 1.86804 * 119.99892 * 359.97438 * 17 15 14 20 20 H 1.48496 * 109.46834 * 90.00219 * 19 17 15 21 21 H 1.48506 * 109.46677 * 210.00122 * 19 17 15 22 22 H 1.48496 * 109.47182 * 329.99721 * 19 17 15 23 23 C 1.53043 * 109.52523 * 61.38664 * 12 11 10 24 24 C 1.46926 * 120.63473 * 174.17779 * 9 7 6 25 25 H 1.08999 * 109.58773 * 6.62877 * 24 9 7 26 26 C 1.52992 * 109.70517 * 246.27368 * 24 9 7 27 27 C 1.39606 * 118.21916 * 0.24651 * 6 5 4 28 28 C 1.38851 * 118.95166 * 359.50832 * 27 6 5 29 29 O 1.35680 * 119.62715 * 180.25001 * 28 27 6 30 30 N 1.31880 * 119.51681 * 305.02162 * 4 3 2 31 31 H 1.09002 * 109.47005 * 300.00175 * 1 2 3 32 32 H 1.09000 * 109.46788 * 60.00054 * 1 2 3 33 33 H 1.08994 * 109.46872 * 179.97438 * 1 2 3 34 34 H 1.09002 * 109.47005 * 239.99825 * 2 1 3 35 35 H 1.09000 * 109.46788 * 119.99946 * 2 1 3 36 36 H 1.09002 * 109.47259 * 59.99980 * 3 2 1 37 37 H 1.08995 * 109.47132 * 300.00200 * 3 2 1 38 38 H 1.07993 * 120.43280 * 359.97438 * 5 4 3 39 39 H 1.08999 * 109.58286 * 353.37326 * 10 9 7 40 40 H 1.08996 * 109.58618 * 113.79315 * 10 9 7 41 41 H 1.08999 * 109.48618 * 185.39757 * 11 10 9 42 42 H 1.09004 * 109.51161 * 65.30365 * 11 10 9 43 43 H 0.96996 * 119.99701 * 264.97014 * 14 12 11 44 44 H 0.97002 * 119.99723 * 179.97438 * 18 17 15 45 45 H 1.09003 * 109.49468 * 58.58174 * 23 12 11 46 46 H 1.08996 * 109.49747 * 178.67530 * 23 12 11 47 47 H 1.09007 * 109.47540 * 300.63745 * 26 24 9 48 48 H 1.08999 * 109.47510 * 60.63897 * 26 24 9 49 49 H 1.09000 * 109.47201 * 180.63832 * 26 24 9 50 50 H 1.08004 * 120.52810 * 179.72774 * 27 6 5 51 51 H 0.96702 * 114.00072 * 270.25241 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5470 1.4424 0.0006 5 6 4.2274 2.1313 -0.9832 6 6 5.6266 2.1255 -0.9752 7 6 6.3962 2.8512 -2.0126 8 8 6.0196 2.8394 -3.1679 9 7 7.5139 3.5244 -1.6751 10 6 7.9130 3.6545 -0.2670 11 6 8.1187 5.1386 0.0517 12 6 9.1175 5.7361 -0.9421 13 1 10.0612 5.1944 -0.8785 14 7 9.3420 7.1474 -0.6195 15 6 10.2723 7.4946 0.3236 16 1 10.8371 6.7277 0.8328 17 6 10.4854 8.8318 0.6289 18 7 11.3791 9.1654 1.5357 19 14 9.5038 10.1578 -0.2473 20 1 8.2609 10.4388 0.5151 21 1 10.3181 11.3962 -0.3405 22 1 9.1524 9.6926 -1.6130 23 6 8.5578 5.6203 -2.3618 24 6 8.3568 4.1417 -2.7082 25 1 7.8669 4.0570 -3.6782 26 6 9.7139 3.4370 -2.7557 27 6 6.2781 1.4127 0.0330 28 6 5.5171 0.7510 0.9875 29 8 6.1361 0.0583 1.9765 30 7 4.1964 0.7840 0.9408 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0276 -0.0005 34 1 1.8933 -0.5139 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 1.6767 1.9564 0.8900 37 1 1.6767 1.9563 -0.8899 38 1 3.6868 2.6670 -1.7494 39 1 7.1302 3.2482 0.3736 40 1 8.8434 3.1121 -0.0994 41 1 8.5072 5.2425 1.0648 42 1 7.1668 5.6637 -0.0289 43 1 8.8319 7.8359 -1.0740 44 1 11.5283 10.0999 1.7487 45 1 7.6018 6.1408 -2.4195 46 1 9.2589 6.0671 -3.0668 47 1 10.2000 3.5185 -1.7834 48 1 9.5687 2.3852 -3.0022 49 1 10.3400 3.9051 -3.5152 50 1 7.3569 1.3795 0.0721 51 1 6.3154 -0.8661 1.7565 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044773145.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:39:50 Heat of formation + Delta-G solvation = -55.566501 kcal Electronic energy + Delta-G solvation = -31077.289099 eV Core-core repulsion = 26976.032774 eV Total energy + Delta-G solvation = -4101.256324 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.23455 -41.02487 -39.10644 -38.31016 -36.45852 -35.93002 -34.43948 -33.75799 -32.82706 -31.69702 -31.52895 -28.78804 -27.94864 -26.32373 -25.46745 -24.55096 -23.81756 -23.11905 -22.42168 -21.51658 -20.31893 -19.71231 -19.05380 -18.45040 -17.79378 -17.33736 -16.92600 -16.78415 -16.51346 -16.03430 -15.87173 -15.83363 -15.33726 -15.22929 -14.96755 -14.87086 -14.60153 -14.50969 -14.20028 -14.09951 -13.72602 -13.55111 -13.38523 -13.08904 -13.00915 -12.99529 -12.76029 -12.69325 -12.49955 -12.33562 -12.17877 -12.07227 -12.01554 -12.00352 -11.79835 -11.57468 -11.44774 -11.16485 -11.01780 -10.87537 -10.47649 -9.89278 -9.81726 -9.31017 -8.01450 -5.34362 -0.39931 -0.16022 1.37530 1.39379 1.46613 1.47610 1.74719 2.32628 2.48235 2.64810 3.09562 3.30030 3.39465 3.48878 3.73978 3.79719 3.83121 3.93485 4.01114 4.06000 4.16485 4.18669 4.21348 4.25922 4.35788 4.47719 4.49500 4.53222 4.56580 4.68380 4.70471 4.73084 4.80195 4.86789 4.90371 4.97678 5.00090 5.00894 5.01926 5.19422 5.21321 5.28241 5.34511 5.40043 5.45235 5.49029 5.54495 5.78804 6.19464 6.22647 6.55149 6.81342 6.86324 7.08444 7.85077 8.02875 9.19734 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013359 B = 0.002515 C = 0.002450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2095.419432 B =11132.207031 C =11424.358176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.111 4.111 3 C -0.071 4.071 4 C 0.154 3.846 5 C -0.136 4.136 6 C -0.070 4.070 7 C 0.562 3.438 8 O -0.563 6.563 9 N -0.588 5.588 10 C 0.106 3.894 11 C -0.144 4.144 12 C 0.177 3.823 13 H 0.059 0.941 14 N -0.752 5.752 15 C -0.222 4.222 16 H 0.063 0.937 17 C -0.064 4.064 18 N -0.983 5.983 19 Si 0.949 3.051 20 H -0.284 1.284 21 H -0.298 1.298 22 H -0.253 1.253 23 C -0.128 4.128 24 C 0.146 3.854 25 H 0.097 0.903 26 C -0.157 4.157 27 C -0.160 4.160 28 C 0.312 3.688 29 O -0.485 6.485 30 N -0.503 5.503 31 H 0.058 0.942 32 H 0.061 0.939 33 H 0.059 0.941 34 H 0.057 0.943 35 H 0.061 0.939 36 H 0.090 0.910 37 H 0.100 0.900 38 H 0.153 0.847 39 H 0.097 0.903 40 H 0.093 0.907 41 H 0.063 0.937 42 H 0.050 0.950 43 H 0.362 0.638 44 H 0.256 0.744 45 H 0.058 0.942 46 H 0.083 0.917 47 H 0.063 0.937 48 H 0.065 0.935 49 H 0.080 0.920 50 H 0.165 0.835 51 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.330 -22.220 -6.643 28.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.149 4.149 3 C -0.108 4.108 4 C 0.016 3.984 5 C -0.157 4.157 6 C -0.081 4.081 7 C 0.351 3.649 8 O -0.443 6.443 9 N -0.319 5.319 10 C -0.017 4.017 11 C -0.185 4.185 12 C 0.070 3.930 13 H 0.077 0.923 14 N -0.395 5.395 15 C -0.353 4.353 16 H 0.081 0.919 17 C -0.256 4.256 18 N -0.633 5.633 19 Si 0.778 3.222 20 H -0.210 1.210 21 H -0.225 1.225 22 H -0.177 1.177 23 C -0.167 4.167 24 C 0.043 3.957 25 H 0.115 0.885 26 C -0.215 4.215 27 C -0.181 4.181 28 C 0.133 3.867 29 O -0.295 6.295 30 N -0.223 5.223 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.076 0.924 35 H 0.080 0.920 36 H 0.108 0.892 37 H 0.119 0.881 38 H 0.171 0.829 39 H 0.115 0.885 40 H 0.111 0.889 41 H 0.082 0.918 42 H 0.069 0.931 43 H 0.195 0.805 44 H 0.065 0.935 45 H 0.076 0.924 46 H 0.102 0.898 47 H 0.082 0.918 48 H 0.084 0.916 49 H 0.099 0.901 50 H 0.182 0.818 51 H 0.284 0.716 Dipole moment (debyes) X Y Z Total from point charges -17.744 -22.191 -6.147 29.070 hybrid contribution 0.493 1.378 -0.701 1.622 sum -17.252 -20.813 -6.848 27.887 Atomic orbital electron populations 1.21766 0.94373 1.02244 1.02380 1.21383 0.96604 0.94869 1.02090 1.20760 0.85986 0.99345 1.04730 1.21303 0.97792 0.90950 0.88364 1.22202 0.92791 1.00274 1.00439 1.20155 0.94630 0.98165 0.95157 1.18386 0.80170 0.78766 0.87601 1.90760 1.68938 1.63643 1.20961 1.48187 1.23387 1.51809 1.08540 1.22179 1.02254 0.96773 0.80456 1.22467 1.00117 0.95010 1.00889 1.20419 0.96393 0.83950 0.92276 0.92321 1.42845 1.46053 1.03428 1.47127 1.19013 1.12017 0.92142 1.12101 0.91949 1.25440 1.00551 0.99359 1.00240 1.69868 1.38952 1.17067 1.37456 0.85489 0.78071 0.79094 0.79580 1.21016 1.22519 1.17732 1.22153 1.01437 0.95883 0.97263 1.21199 0.91785 0.91223 0.91495 0.88529 1.22122 0.95151 1.00753 1.03439 1.22467 1.02901 0.99686 0.93052 1.19046 0.86617 0.93868 0.87131 1.84780 1.76702 1.29548 1.38493 1.66848 1.10414 1.20307 1.24729 0.92330 0.91956 0.92232 0.92416 0.92048 0.89157 0.88148 0.82910 0.88461 0.88874 0.91797 0.93076 0.80476 0.93505 0.92367 0.89840 0.91792 0.91600 0.90096 0.81766 0.71617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 9.91 71.98 0.71 -0.75 16 2 C -0.11 -1.42 5.79 30.60 0.18 -1.24 16 3 C -0.07 -0.95 5.61 29.85 0.17 -0.78 16 4 C 0.15 2.89 6.18 42.50 0.26 3.15 16 5 C -0.14 -2.74 9.36 22.63 0.21 -2.53 16 6 C -0.07 -1.53 5.15 -19.90 -0.10 -1.63 16 7 C 0.56 14.46 7.38 86.88 0.64 15.10 16 8 O -0.56 -17.67 16.37 -3.76 -0.06 -17.73 16 9 N -0.59 -14.12 2.68 -798.09 -2.14 -16.26 16 10 C 0.11 2.43 4.53 86.36 0.39 2.82 16 11 C -0.14 -4.45 5.66 30.67 0.17 -4.28 16 12 C 0.18 6.07 2.53 45.02 0.11 6.18 16 13 H 0.06 2.06 6.45 -2.39 -0.02 2.04 16 14 N -0.75 -33.33 4.92 -322.80 -1.59 -34.92 16 15 C -0.22 -12.10 10.41 84.03 0.87 -11.22 16 16 H 0.06 3.70 8.06 -2.91 -0.02 3.68 16 17 C -0.06 -3.73 5.50 84.86 0.47 -3.26 16 18 N -0.98 -62.06 13.97 21.65 0.30 -61.75 16 19 Si 0.95 45.13 27.73 68.60 1.90 47.03 16 20 H -0.28 -13.33 7.11 99.48 0.71 -12.63 16 21 H -0.30 -14.46 7.11 99.48 0.71 -13.75 16 22 H -0.25 -10.83 6.52 99.48 0.65 -10.18 16 23 C -0.13 -3.64 5.02 30.67 0.15 -3.49 16 24 C 0.15 3.53 3.21 44.97 0.14 3.67 16 25 H 0.10 2.46 7.00 -2.39 -0.02 2.44 16 26 C -0.16 -3.20 9.03 71.98 0.65 -2.55 16 27 C -0.16 -2.98 7.43 22.75 0.17 -2.81 16 28 C 0.31 6.08 7.74 84.78 0.66 6.73 16 29 O -0.48 -7.82 13.56 -89.98 -1.22 -9.04 16 30 N -0.50 -10.57 9.87 -297.16 -2.93 -13.50 16 31 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 33 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 34 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.06 0.93 7.94 -2.39 -0.02 0.91 16 36 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.10 1.01 7.86 -2.39 -0.02 0.99 16 38 H 0.15 2.79 7.94 -2.91 -0.02 2.77 16 39 H 0.10 2.07 4.73 -2.39 -0.01 2.06 16 40 H 0.09 1.83 7.48 -2.39 -0.02 1.82 16 41 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 42 H 0.05 1.66 8.14 -2.38 -0.02 1.64 16 43 H 0.36 15.79 5.66 -92.71 -0.52 15.26 16 44 H 0.26 15.52 8.31 -92.71 -0.77 14.75 16 45 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 46 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 47 H 0.06 1.36 5.74 -2.38 -0.01 1.35 16 48 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 49 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 50 H 0.16 2.51 6.65 -2.91 -0.02 2.49 16 51 H 0.42 2.39 9.06 -74.06 -0.67 1.72 16 Total: -1.00 -73.22 402.70 -0.17 -73.39 By element: Atomic # 1 Polarization: 29.96 SS G_CDS: -0.30 Total: 29.66 kcal Atomic # 6 Polarization: -2.74 SS G_CDS: 5.86 Total: 3.12 kcal Atomic # 7 Polarization: -120.07 SS G_CDS: -6.36 Total: -126.44 kcal Atomic # 8 Polarization: -25.49 SS G_CDS: -1.28 Total: -26.77 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 1.90 Total: 47.03 kcal Total: -73.22 -0.17 -73.39 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044773145.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.824 kcal (2) G-P(sol) polarization free energy of solvation -73.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds