Wall clock time and date at job start Wed Apr 1 2020 05:17:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.46920 * 2 1 4 4 C 1.50701 * 109.47145 * 180.02562 * 3 2 1 5 5 N 1.30617 * 125.42547 * 90.02493 * 4 3 2 6 6 C 1.33688 * 108.99843 * 180.02562 * 5 4 3 7 7 C 1.50699 * 126.27328 * 180.02562 * 6 5 4 8 8 C 1.36342 * 107.45010 * 0.02562 * 6 5 4 9 9 C 1.46724 * 126.63978 * 179.97438 * 8 6 5 10 10 O 1.21685 * 120.00041 * 4.86264 * 9 8 6 11 11 N 1.34782 * 120.00122 * 184.85578 * 9 8 6 12 12 C 1.44781 * 120.17986 * 175.10849 * 11 9 8 13 13 C 1.51511 * 112.22285 * 264.53380 * 12 11 9 14 14 C 1.51321 * 113.25085 * 285.36837 * 13 12 11 15 15 H 1.08994 * 111.31219 * 185.23339 * 14 13 12 16 16 C 1.54717 * 106.48234 * 307.66327 * 14 13 12 17 17 C 1.54613 * 104.28764 * 88.99004 * 16 14 13 18 18 C 1.50871 * 105.21883 * 11.54096 * 17 16 14 19 19 H 1.08994 * 105.90284 * 122.35942 * 18 17 16 20 20 C 1.49822 * 120.17587 * 355.08480 * 11 9 8 21 21 N 1.48066 * 109.90141 * 8.03330 * 18 17 16 22 22 C 1.36937 * 127.83779 * 155.16494 * 21 18 17 23 23 H 1.07996 * 119.99959 * 153.24235 * 22 21 18 24 24 C 1.38819 * 120.00085 * 333.24496 * 22 21 18 25 25 N 1.31616 * 120.00277 * 157.12571 * 24 22 21 26 26 Si 1.86804 * 119.99576 * 337.13035 * 24 22 21 27 27 H 1.48497 * 109.47103 * 87.61000 * 26 24 22 28 28 H 1.48498 * 109.46589 * 207.60963 * 26 24 22 29 29 H 1.48495 * 109.47239 * 327.60798 * 26 24 22 30 30 O 1.33671 * 125.42181 * 270.31752 * 4 3 2 31 31 H 1.09002 * 109.47187 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47217 * 299.99319 * 1 2 3 33 33 H 1.09003 * 109.47380 * 59.99896 * 1 2 3 34 34 H 1.08998 * 109.47217 * 240.00681 * 2 1 3 35 35 H 1.09003 * 109.47380 * 120.00104 * 2 1 3 36 36 H 1.09001 * 109.46882 * 60.00758 * 3 2 1 37 37 H 1.08997 * 109.47604 * 300.00080 * 3 2 1 38 38 H 1.08996 * 109.47224 * 269.97687 * 7 6 5 39 39 H 1.08996 * 109.46910 * 29.98135 * 7 6 5 40 40 H 1.09005 * 109.46809 * 149.98172 * 7 6 5 41 41 H 1.09006 * 108.93163 * 143.82726 * 12 11 9 42 42 H 1.09004 * 108.93778 * 25.24438 * 12 11 9 43 43 H 1.08993 * 108.72801 * 164.39728 * 13 12 11 44 44 H 1.08996 * 108.72458 * 46.33771 * 13 12 11 45 45 H 1.08996 * 110.45264 * 207.83833 * 16 14 13 46 46 H 1.09002 * 110.45222 * 330.38856 * 16 14 13 47 47 H 1.09004 * 110.17460 * 252.67930 * 17 16 14 48 48 H 1.09001 * 110.53209 * 130.58415 * 17 16 14 49 49 H 1.08999 * 109.54713 * 270.57954 * 20 11 9 50 50 H 1.08996 * 109.54574 * 30.76144 * 20 11 9 51 51 H 0.96997 * 120.00311 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5469 1.4426 -0.0006 5 7 4.3036 1.4432 -1.0653 6 6 5.5861 1.4425 -0.6878 7 6 6.7845 1.4434 -1.6015 8 6 5.6110 1.4408 0.6754 9 6 6.8041 1.4389 1.5294 10 8 7.9101 1.5282 1.0297 11 7 6.6752 1.3385 2.8672 12 6 7.8505 1.2298 3.7056 13 6 8.1871 -0.2099 4.0366 14 6 7.2571 -0.8202 5.0624 15 1 7.5812 -1.8218 5.3447 16 6 7.2395 0.1474 6.2696 17 6 6.0981 1.1392 5.9471 18 6 5.3646 0.5319 4.7769 19 1 4.3308 0.4137 5.1012 20 6 5.3148 1.3393 3.4949 21 7 5.8747 -0.8334 4.5158 22 6 5.2230 -1.8709 3.9043 23 1 5.7874 -2.6368 3.3932 24 6 3.8370 -1.9382 3.9411 25 7 3.1868 -2.6249 3.0257 26 14 2.8946 -1.0539 5.2901 27 1 2.6184 0.3426 4.8671 28 1 1.6116 -1.7582 5.5408 29 1 3.7048 -1.0431 6.5345 30 8 4.3222 1.4364 1.0883 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5137 0.8900 33 1 -0.3634 0.5139 -0.8900 34 1 1.8933 -0.5137 -0.8900 35 1 1.8934 -0.5139 0.8900 36 1 1.6767 1.9563 0.8901 37 1 1.6766 1.9564 -0.8899 38 1 7.0735 0.4160 -1.8228 39 1 6.5338 1.9582 -2.5290 40 1 7.6130 1.9568 -1.1135 41 1 7.6747 1.7741 4.6335 42 1 8.6972 1.6809 3.1881 43 1 9.2066 -0.2517 4.4198 44 1 8.1352 -0.8005 3.1220 45 1 7.0268 -0.3960 7.1902 46 1 8.1901 0.6750 6.3487 47 1 6.5102 2.1101 5.6721 48 1 5.4282 1.2418 6.8008 49 1 5.0170 2.3637 3.7187 50 1 4.5960 0.8925 2.8080 51 1 2.2183 -2.6722 3.0517 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001045879114.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:17:52 Heat of formation + Delta-G solvation = 29.639828 kcal Electronic energy + Delta-G solvation = -33813.575297 eV Core-core repulsion = 29716.013797 eV Total energy + Delta-G solvation = -4097.561501 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -43.14021 -40.23641 -38.34149 -35.36596 -35.06498 -34.17016 -33.18238 -32.17692 -31.26648 -30.20377 -28.46155 -28.00615 -26.66514 -25.96462 -23.91480 -23.00569 -22.12049 -21.28261 -20.84446 -20.46231 -19.61233 -18.83592 -17.56713 -16.66336 -16.42854 -16.19258 -15.72116 -15.49899 -15.17850 -14.90739 -14.54457 -14.24639 -13.81120 -13.70603 -13.36143 -13.25196 -13.00416 -12.99793 -12.76583 -12.62664 -12.30969 -12.23779 -12.00645 -11.77562 -11.70901 -11.57691 -11.43622 -11.28627 -11.21820 -11.06356 -10.85537 -10.74723 -10.66661 -10.57745 -10.36130 -10.23455 -9.96290 -9.84367 -9.66498 -9.35359 -8.63440 -8.54626 -8.13079 -7.10219 -6.06196 -3.38169 1.16959 2.64230 2.74721 3.17946 3.30109 3.37754 3.40956 3.52554 4.07914 4.42134 4.67002 4.80432 4.94837 5.04228 5.05073 5.10714 5.15626 5.23502 5.29034 5.39955 5.45595 5.52540 5.56501 5.65016 5.67757 5.73895 5.80114 5.82031 5.84644 5.86091 5.89450 5.95989 6.04043 6.06928 6.09278 6.17576 6.22011 6.25239 6.29589 6.36856 6.45810 6.50404 6.51661 6.56918 6.65823 6.74283 6.83933 7.01613 7.59927 7.65342 7.90767 8.23323 8.40028 8.72300 9.56982 10.17460 11.09620 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009093 B = 0.006367 C = 0.004267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3078.566955 B = 4396.847056 C = 6560.159659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.126 4.126 3 C -0.024 4.024 4 C 0.217 3.783 5 N -0.491 5.491 6 C 0.070 3.930 7 C -0.076 4.076 8 C -0.102 4.102 9 C 0.609 3.391 10 O -0.535 6.535 11 N -0.576 5.576 12 C 0.115 3.885 13 C -0.147 4.147 14 C 0.150 3.850 15 H 0.074 0.926 16 C -0.132 4.132 17 C -0.121 4.121 18 C 0.119 3.881 19 H 0.044 0.956 20 C 0.102 3.898 21 N -0.586 5.586 22 C -0.232 4.232 23 H 0.087 0.913 24 C 0.033 3.967 25 N -0.896 5.896 26 Si 0.871 3.129 27 H -0.284 1.284 28 H -0.301 1.301 29 H -0.273 1.273 30 O -0.171 6.171 31 H 0.061 0.939 32 H 0.055 0.945 33 H 0.053 0.947 34 H 0.070 0.930 35 H 0.083 0.917 36 H 0.092 0.908 37 H 0.103 0.897 38 H 0.078 0.922 39 H 0.072 0.928 40 H 0.093 0.907 41 H 0.081 0.919 42 H 0.076 0.924 43 H 0.062 0.938 44 H 0.063 0.937 45 H 0.062 0.938 46 H 0.067 0.933 47 H 0.070 0.930 48 H 0.065 0.935 49 H 0.056 0.944 50 H 0.103 0.897 51 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.349 10.410 -0.862 10.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.165 4.165 3 C -0.062 4.062 4 C 0.011 3.989 5 N -0.221 5.221 6 C -0.055 4.055 7 C -0.133 4.133 8 C -0.157 4.157 9 C 0.397 3.603 10 O -0.415 6.415 11 N -0.306 5.306 12 C -0.008 4.008 13 C -0.188 4.188 14 C 0.043 3.957 15 H 0.092 0.908 16 C -0.171 4.171 17 C -0.159 4.159 18 C 0.012 3.988 19 H 0.062 0.938 20 C -0.021 4.021 21 N -0.309 5.309 22 C -0.359 4.359 23 H 0.105 0.895 24 C -0.167 4.167 25 N -0.538 5.538 26 Si 0.703 3.297 27 H -0.212 1.212 28 H -0.230 1.230 29 H -0.199 1.199 30 O -0.057 6.057 31 H 0.080 0.920 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.089 0.911 35 H 0.102 0.898 36 H 0.110 0.890 37 H 0.122 0.878 38 H 0.096 0.904 39 H 0.091 0.909 40 H 0.112 0.888 41 H 0.099 0.901 42 H 0.094 0.906 43 H 0.080 0.920 44 H 0.082 0.918 45 H 0.081 0.919 46 H 0.086 0.914 47 H 0.088 0.912 48 H 0.083 0.917 49 H 0.074 0.926 50 H 0.121 0.879 51 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.429 10.241 -1.744 10.487 hybrid contribution -0.671 0.288 1.467 1.639 sum 0.758 10.529 -0.277 10.560 Atomic orbital electron populations 1.21712 0.94870 1.02316 1.01481 1.21572 0.96227 0.94124 1.04545 1.20256 0.81001 1.00185 1.04797 1.26517 0.96433 0.96680 0.79220 1.70262 1.01469 1.20345 1.30028 1.21931 0.93414 0.98899 0.91224 1.20318 0.92418 1.03449 0.97115 1.22854 0.82622 1.15381 0.94892 1.16402 0.85330 0.77007 0.81563 1.90766 1.24194 1.52921 1.73652 1.48020 1.08240 1.69527 1.04799 1.20973 0.87436 0.97580 0.94809 1.21936 0.98900 0.96411 1.01508 1.21279 0.87033 0.96773 0.90594 0.90789 1.22742 0.97484 0.97516 0.99333 1.21891 0.97990 0.98528 0.97469 1.20676 0.98743 0.87510 0.91851 0.93841 1.22856 0.82840 0.98948 0.97457 1.45214 1.11641 1.05634 1.68456 1.18470 0.89282 1.01804 1.26302 0.89549 1.25103 0.96137 0.97790 0.97667 1.69856 1.07736 1.44122 1.32098 0.87030 0.79088 0.78173 0.85400 1.21207 1.22955 1.19865 1.84722 1.16206 1.68744 1.36071 0.92025 0.92614 0.92814 0.91084 0.89793 0.88955 0.87830 0.90364 0.90947 0.88815 0.90070 0.90566 0.91978 0.91844 0.91882 0.91415 0.91183 0.91665 0.92553 0.87921 0.92688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 9.91 37.16 0.37 -1.32 16 2 C -0.13 -1.83 5.92 -26.73 -0.16 -1.99 16 3 C -0.02 -0.33 5.84 -27.88 -0.16 -0.49 16 4 C 0.22 3.80 7.57 -12.79 -0.10 3.70 16 5 N -0.49 -8.98 11.26 -7.07 -0.08 -9.06 16 6 C 0.07 1.30 7.16 -82.47 -0.59 0.71 16 7 C -0.08 -1.17 9.93 36.01 0.36 -0.81 16 8 C -0.10 -2.04 6.85 -36.84 -0.25 -2.29 16 9 C 0.61 12.20 7.65 -12.83 -0.10 12.10 16 10 O -0.53 -10.97 14.23 5.20 0.07 -10.90 16 11 N -0.58 -10.84 2.87 -175.53 -0.50 -11.34 16 12 C 0.11 1.87 5.18 -5.71 -0.03 1.84 16 13 C -0.15 -2.49 5.01 -28.33 -0.14 -2.63 16 14 C 0.15 2.75 4.08 -66.68 -0.27 2.48 16 15 H 0.07 1.38 8.14 -51.93 -0.42 0.95 16 16 C -0.13 -1.97 6.04 -24.98 -0.15 -2.12 16 17 C -0.12 -1.91 5.80 -26.95 -0.16 -2.06 16 18 C 0.12 2.37 1.90 -68.85 -0.13 2.24 16 19 H 0.04 0.97 2.39 -51.93 -0.12 0.85 16 20 C 0.10 1.98 5.51 -2.90 -0.02 1.96 16 21 N -0.59 -13.16 2.35 -157.28 -0.37 -13.53 16 22 C -0.23 -6.23 10.65 -15.06 -0.16 -6.39 16 23 H 0.09 2.56 8.06 -52.49 -0.42 2.13 16 24 C 0.03 0.90 5.45 -17.43 -0.09 0.81 16 25 N -0.90 -25.88 13.97 55.49 0.78 -25.10 16 26 Si 0.87 21.19 25.03 -169.99 -4.25 16.94 16 27 H -0.28 -6.58 6.65 56.52 0.38 -6.20 16 28 H -0.30 -7.50 7.11 56.52 0.40 -7.10 16 29 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 30 O -0.17 -3.35 7.34 4.42 0.03 -3.32 16 31 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 35 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 36 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 37 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 39 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.09 1.46 6.38 -51.93 -0.33 1.13 16 41 H 0.08 1.16 3.92 -51.93 -0.20 0.96 16 42 H 0.08 1.22 7.17 -51.93 -0.37 0.84 16 43 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 44 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 45 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 46 H 0.07 0.82 7.38 -51.93 -0.38 0.44 16 47 H 0.07 0.94 6.13 -51.93 -0.32 0.62 16 48 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 49 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 50 H 0.10 2.29 4.94 -51.93 -0.26 2.03 16 51 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 385.15 15.07 5.80 5.80 Total: -1.00 -31.32 385.15 -8.22 -39.54 By element: Atomic # 1 Polarization: 13.15 SS G_CDS: -7.91 Total: 5.23 kcal Atomic # 6 Polarization: 7.53 SS G_CDS: -1.79 Total: 5.74 kcal Atomic # 7 Polarization: -58.86 SS G_CDS: -0.18 Total: -59.04 kcal Atomic # 8 Polarization: -14.32 SS G_CDS: 0.11 Total: -14.22 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -4.25 Total: 16.94 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -31.32 -8.22 -39.54 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045879114.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.180 kcal (2) G-P(sol) polarization free energy of solvation -31.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.540 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds