Wall clock time and date at job start Wed Apr 1 2020 05:17:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.46920 * 2 1 4 4 C 1.50701 * 109.47145 * 180.02562 * 3 2 1 5 5 N 1.30617 * 125.42547 * 90.02493 * 4 3 2 6 6 C 1.33688 * 108.99843 * 180.02562 * 5 4 3 7 7 C 1.50699 * 126.27328 * 180.02562 * 6 5 4 8 8 C 1.36342 * 107.45010 * 0.02562 * 6 5 4 9 9 C 1.46724 * 126.63978 * 179.97438 * 8 6 5 10 10 O 1.21685 * 120.00041 * 4.86264 * 9 8 6 11 11 N 1.34782 * 120.00122 * 184.85578 * 9 8 6 12 12 C 1.44781 * 120.17986 * 175.10849 * 11 9 8 13 13 C 1.51511 * 112.22285 * 264.53380 * 12 11 9 14 14 C 1.51321 * 113.25085 * 285.36837 * 13 12 11 15 15 H 1.08994 * 111.31219 * 185.23339 * 14 13 12 16 16 C 1.54717 * 106.48234 * 307.66327 * 14 13 12 17 17 C 1.54613 * 104.28764 * 88.99004 * 16 14 13 18 18 C 1.50871 * 105.21883 * 11.54096 * 17 16 14 19 19 H 1.08994 * 105.90284 * 122.35942 * 18 17 16 20 20 C 1.49822 * 120.17587 * 355.08480 * 11 9 8 21 21 N 1.48066 * 109.90141 * 8.03330 * 18 17 16 22 22 C 1.36937 * 127.83779 * 155.16494 * 21 18 17 23 23 H 1.07996 * 119.99959 * 153.24235 * 22 21 18 24 24 C 1.38819 * 120.00085 * 333.24496 * 22 21 18 25 25 N 1.31616 * 120.00277 * 157.12571 * 24 22 21 26 26 Si 1.86804 * 119.99576 * 337.13035 * 24 22 21 27 27 H 1.48497 * 109.47103 * 87.61000 * 26 24 22 28 28 H 1.48498 * 109.46589 * 207.60963 * 26 24 22 29 29 H 1.48495 * 109.47239 * 327.60798 * 26 24 22 30 30 O 1.33671 * 125.42181 * 270.31752 * 4 3 2 31 31 H 1.09002 * 109.47187 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47217 * 299.99319 * 1 2 3 33 33 H 1.09003 * 109.47380 * 59.99896 * 1 2 3 34 34 H 1.08998 * 109.47217 * 240.00681 * 2 1 3 35 35 H 1.09003 * 109.47380 * 120.00104 * 2 1 3 36 36 H 1.09001 * 109.46882 * 60.00758 * 3 2 1 37 37 H 1.08997 * 109.47604 * 300.00080 * 3 2 1 38 38 H 1.08996 * 109.47224 * 269.97687 * 7 6 5 39 39 H 1.08996 * 109.46910 * 29.98135 * 7 6 5 40 40 H 1.09005 * 109.46809 * 149.98172 * 7 6 5 41 41 H 1.09006 * 108.93163 * 143.82726 * 12 11 9 42 42 H 1.09004 * 108.93778 * 25.24438 * 12 11 9 43 43 H 1.08993 * 108.72801 * 164.39728 * 13 12 11 44 44 H 1.08996 * 108.72458 * 46.33771 * 13 12 11 45 45 H 1.08996 * 110.45264 * 207.83833 * 16 14 13 46 46 H 1.09002 * 110.45222 * 330.38856 * 16 14 13 47 47 H 1.09004 * 110.17460 * 252.67930 * 17 16 14 48 48 H 1.09001 * 110.53209 * 130.58415 * 17 16 14 49 49 H 1.08999 * 109.54713 * 270.57954 * 20 11 9 50 50 H 1.08996 * 109.54574 * 30.76144 * 20 11 9 51 51 H 0.96997 * 120.00311 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5469 1.4426 -0.0006 5 7 4.3036 1.4432 -1.0653 6 6 5.5861 1.4425 -0.6878 7 6 6.7845 1.4434 -1.6015 8 6 5.6110 1.4408 0.6754 9 6 6.8041 1.4389 1.5294 10 8 7.9101 1.5282 1.0297 11 7 6.6752 1.3385 2.8672 12 6 7.8505 1.2298 3.7056 13 6 8.1871 -0.2099 4.0366 14 6 7.2571 -0.8202 5.0624 15 1 7.5812 -1.8218 5.3447 16 6 7.2395 0.1474 6.2696 17 6 6.0981 1.1392 5.9471 18 6 5.3646 0.5319 4.7769 19 1 4.3308 0.4137 5.1012 20 6 5.3148 1.3393 3.4949 21 7 5.8747 -0.8334 4.5158 22 6 5.2230 -1.8709 3.9043 23 1 5.7874 -2.6368 3.3932 24 6 3.8370 -1.9382 3.9411 25 7 3.1868 -2.6249 3.0257 26 14 2.8946 -1.0539 5.2901 27 1 2.6184 0.3426 4.8671 28 1 1.6116 -1.7582 5.5408 29 1 3.7048 -1.0431 6.5345 30 8 4.3222 1.4364 1.0883 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5137 0.8900 33 1 -0.3634 0.5139 -0.8900 34 1 1.8933 -0.5137 -0.8900 35 1 1.8934 -0.5139 0.8900 36 1 1.6767 1.9563 0.8901 37 1 1.6766 1.9564 -0.8899 38 1 7.0735 0.4160 -1.8228 39 1 6.5338 1.9582 -2.5290 40 1 7.6130 1.9568 -1.1135 41 1 7.6747 1.7741 4.6335 42 1 8.6972 1.6809 3.1881 43 1 9.2066 -0.2517 4.4198 44 1 8.1352 -0.8005 3.1220 45 1 7.0268 -0.3960 7.1902 46 1 8.1901 0.6750 6.3487 47 1 6.5102 2.1101 5.6721 48 1 5.4282 1.2418 6.8008 49 1 5.0170 2.3637 3.7187 50 1 4.5960 0.8925 2.8080 51 1 2.2183 -2.6722 3.0517 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001045879114.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:17:50 Heat of formation + Delta-G solvation = 8.362705 kcal Electronic energy + Delta-G solvation = -33814.497942 eV Core-core repulsion = 29716.013797 eV Total energy + Delta-G solvation = -4098.484146 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -44.56695 -41.70020 -39.85318 -36.75689 -36.28064 -35.70111 -34.91181 -33.80560 -32.59480 -31.93552 -29.80594 -29.21985 -28.11860 -27.38282 -25.74459 -24.38406 -23.41105 -22.69422 -22.10387 -21.90903 -21.20174 -20.29770 -19.22248 -18.11084 -18.09450 -17.70968 -17.21673 -17.11836 -16.55319 -16.13898 -15.99410 -15.59198 -15.45670 -15.26662 -14.85443 -14.70063 -14.44095 -14.29462 -14.23369 -14.10467 -13.80169 -13.35196 -13.34844 -13.16654 -13.12152 -13.04168 -12.79933 -12.70640 -12.56225 -12.46295 -12.34475 -12.31521 -11.98924 -11.95663 -11.73242 -11.68043 -11.62301 -11.38550 -11.29514 -10.86995 -10.54254 -10.05640 -9.58185 -8.95812 -8.18544 -5.46337 -0.29146 1.21815 1.23515 1.36089 1.36568 1.45954 1.85155 2.04396 2.38957 2.77386 2.94497 3.29528 3.37430 3.61530 3.72482 3.83575 3.93095 3.95299 3.98160 4.04004 4.11582 4.23228 4.29444 4.37805 4.44139 4.45755 4.54165 4.55395 4.59974 4.61864 4.64093 4.70971 4.79944 4.82485 4.83246 4.87031 5.01248 5.03509 5.08360 5.12993 5.16339 5.22768 5.27011 5.29692 5.33922 5.36677 5.47862 5.62656 5.75439 6.10754 6.12540 6.46799 6.75496 6.89991 7.51746 8.22304 9.01918 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009093 B = 0.006367 C = 0.004267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3078.566955 B = 4396.847056 C = 6560.159659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.121 4.121 3 C -0.021 4.021 4 C 0.215 3.785 5 N -0.503 5.503 6 C 0.065 3.935 7 C -0.071 4.071 8 C -0.136 4.136 9 C 0.601 3.399 10 O -0.548 6.548 11 N -0.576 5.576 12 C 0.111 3.889 13 C -0.138 4.138 14 C 0.137 3.863 15 H 0.061 0.939 16 C -0.118 4.118 17 C -0.118 4.118 18 C 0.117 3.883 19 H 0.023 0.977 20 C 0.103 3.897 21 N -0.606 5.606 22 C -0.224 4.224 23 H 0.036 0.964 24 C -0.019 4.019 25 N -0.943 5.943 26 Si 0.938 3.062 27 H -0.266 1.266 28 H -0.312 1.312 29 H -0.264 1.264 30 O -0.184 6.184 31 H 0.055 0.945 32 H 0.064 0.936 33 H 0.081 0.919 34 H 0.058 0.942 35 H 0.036 0.964 36 H 0.112 0.888 37 H 0.137 0.863 38 H 0.079 0.921 39 H 0.096 0.904 40 H 0.091 0.909 41 H 0.115 0.885 42 H 0.083 0.917 43 H 0.100 0.900 44 H 0.015 0.985 45 H 0.068 0.932 46 H 0.109 0.891 47 H 0.103 0.897 48 H 0.079 0.921 49 H 0.088 0.912 50 H 0.068 0.932 51 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.552 13.690 0.945 13.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.160 4.160 3 C -0.059 4.059 4 C 0.010 3.990 5 N -0.233 5.233 6 C -0.060 4.060 7 C -0.128 4.128 8 C -0.191 4.191 9 C 0.389 3.611 10 O -0.430 6.430 11 N -0.306 5.306 12 C -0.011 4.011 13 C -0.178 4.178 14 C 0.032 3.968 15 H 0.079 0.921 16 C -0.157 4.157 17 C -0.156 4.156 18 C 0.011 3.989 19 H 0.041 0.959 20 C -0.020 4.020 21 N -0.330 5.330 22 C -0.353 4.353 23 H 0.054 0.946 24 C -0.215 4.215 25 N -0.588 5.588 26 Si 0.769 3.231 27 H -0.193 1.193 28 H -0.241 1.241 29 H -0.189 1.189 30 O -0.071 6.071 31 H 0.074 0.926 32 H 0.083 0.917 33 H 0.100 0.900 34 H 0.077 0.923 35 H 0.055 0.945 36 H 0.130 0.870 37 H 0.155 0.845 38 H 0.097 0.903 39 H 0.115 0.885 40 H 0.109 0.891 41 H 0.132 0.868 42 H 0.101 0.899 43 H 0.118 0.882 44 H 0.034 0.966 45 H 0.087 0.913 46 H 0.128 0.872 47 H 0.121 0.879 48 H 0.098 0.902 49 H 0.106 0.894 50 H 0.086 0.914 51 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 1.676 13.551 0.097 13.654 hybrid contribution -0.673 -0.834 0.789 1.331 sum 1.003 12.717 0.886 12.787 Atomic orbital electron populations 1.21680 0.92085 1.02595 1.03328 1.21473 0.98570 0.94362 1.01582 1.20546 0.78306 0.99680 1.07375 1.27501 0.97928 0.94842 0.78703 1.70301 1.01449 1.21215 1.30303 1.22489 0.94423 0.97601 0.91447 1.20375 0.91160 1.03748 0.97535 1.23035 0.82948 1.17467 0.95601 1.16548 0.85300 0.77082 0.82135 1.90734 1.24517 1.53812 1.73948 1.48113 1.08812 1.68974 1.04655 1.21209 0.86798 0.97207 0.95860 1.21861 1.00738 0.96123 0.99062 1.21530 0.84917 0.97662 0.92739 0.92107 1.22697 0.99327 0.96488 0.97164 1.21966 0.98138 0.99705 0.95766 1.20940 0.98253 0.86289 0.93395 0.95943 1.22771 0.82556 1.00267 0.96412 1.45235 1.13206 1.06014 1.68496 1.18171 0.89331 1.02138 1.25616 0.94633 1.25643 0.96935 0.99458 0.99464 1.69994 1.07805 1.46987 1.34026 0.85938 0.77038 0.77759 0.82402 1.19285 1.24109 1.18864 1.84730 1.16360 1.69150 1.36899 0.92615 0.91681 0.89967 0.92337 0.94513 0.86966 0.84507 0.90286 0.88496 0.89053 0.86752 0.89871 0.88177 0.96557 0.91338 0.87227 0.87866 0.90199 0.89417 0.91373 0.92942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.07 9.91 71.98 0.71 -2.36 16 2 C -0.12 -3.60 5.92 30.59 0.18 -3.42 16 3 C -0.02 -0.56 5.84 29.85 0.17 -0.38 16 4 C 0.22 7.63 7.57 88.29 0.67 8.30 16 5 N -0.50 -18.53 11.26 -291.05 -3.28 -21.81 16 6 C 0.06 2.46 7.16 41.83 0.30 2.76 16 7 C -0.07 -2.20 9.93 71.24 0.71 -1.49 16 8 C -0.14 -5.56 6.85 24.05 0.16 -5.40 16 9 C 0.60 24.39 7.65 86.46 0.66 25.05 16 10 O -0.55 -22.68 14.23 -4.30 -0.06 -22.74 16 11 N -0.58 -21.20 2.87 -827.47 -2.37 -23.57 16 12 C 0.11 3.32 5.18 86.21 0.45 3.76 16 13 C -0.14 -4.47 5.01 29.56 0.15 -4.32 16 14 C 0.14 4.86 4.08 44.61 0.18 5.04 16 15 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 16 C -0.12 -2.99 6.04 31.73 0.19 -2.80 16 17 C -0.12 -3.15 5.80 30.45 0.18 -2.97 16 18 C 0.12 4.45 1.90 43.54 0.08 4.53 16 19 H 0.02 0.97 2.39 -2.39 -0.01 0.96 16 20 C 0.10 3.87 5.51 85.27 0.47 4.34 16 21 N -0.61 -27.36 2.35 -651.51 -1.53 -28.90 16 22 C -0.22 -12.70 10.65 84.04 0.90 -11.81 16 23 H 0.04 2.32 8.06 -2.91 -0.02 2.29 16 24 C -0.02 -1.08 5.45 84.86 0.46 -0.61 16 25 N -0.94 -57.90 13.97 21.65 0.30 -57.60 16 26 Si 0.94 44.81 25.03 68.60 1.72 46.53 16 27 H -0.27 -11.75 6.65 99.48 0.66 -11.08 16 28 H -0.31 -15.27 7.11 99.48 0.71 -14.56 16 29 H -0.26 -12.03 7.11 99.48 0.71 -11.32 16 30 O -0.18 -7.42 7.34 -7.09 -0.05 -7.47 16 31 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.06 1.31 8.14 -2.39 -0.02 1.30 16 33 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 35 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.11 2.47 8.14 -2.39 -0.02 2.45 16 37 H 0.14 2.65 8.14 -2.39 -0.02 2.63 16 38 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 39 H 0.10 2.46 8.14 -2.39 -0.02 2.44 16 40 H 0.09 2.86 6.38 -2.38 -0.02 2.85 16 41 H 0.11 2.67 3.92 -2.38 -0.01 2.66 16 42 H 0.08 2.43 7.17 -2.38 -0.02 2.41 16 43 H 0.10 2.48 8.14 -2.39 -0.02 2.46 16 44 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 45 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 46 H 0.11 1.93 7.38 -2.39 -0.02 1.91 16 47 H 0.10 2.10 6.13 -2.39 -0.01 2.09 16 48 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 49 H 0.09 2.72 8.14 -2.39 -0.02 2.70 16 50 H 0.07 3.10 4.94 -2.39 -0.01 3.09 16 51 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 Total: -1.00 -75.11 385.15 2.25 -72.86 By element: Atomic # 1 Polarization: 23.57 SS G_CDS: 0.90 Total: 24.47 kcal Atomic # 6 Polarization: 11.60 SS G_CDS: 6.62 Total: 18.22 kcal Atomic # 7 Polarization: -124.99 SS G_CDS: -6.88 Total: -131.87 kcal Atomic # 8 Polarization: -30.10 SS G_CDS: -0.11 Total: -30.21 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 1.72 Total: 46.53 kcal Total: -75.11 2.25 -72.86 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045879114.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.226 kcal (2) G-P(sol) polarization free energy of solvation -75.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.864 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds