Wall clock time and date at job start Wed Apr 1 2020 05:30:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47063 * 2 1 4 4 C 1.53005 * 109.47020 * 239.99835 * 2 1 3 5 5 C 1.50702 * 109.47110 * 119.99805 * 2 1 3 6 6 O 1.34250 * 126.52523 * 241.80737 * 5 2 1 7 7 C 1.34056 * 108.22654 * 179.97438 * 6 5 2 8 8 N 1.29937 * 109.24206 * 359.72188 * 7 6 5 9 9 C 1.36069 * 108.47390 * 0.44545 * 8 7 6 10 10 C 1.47422 * 126.44561 * 179.82138 * 9 8 7 11 11 O 1.21609 * 120.00178 * 174.34235 * 10 9 8 12 12 N 1.34779 * 120.00039 * 354.34181 * 10 9 8 13 13 C 1.46501 * 120.00259 * 180.02562 * 12 10 9 14 14 H 1.09001 * 109.17640 * 35.44174 * 13 12 10 15 15 C 1.53028 * 109.32922 * 154.99742 * 13 12 10 16 16 C 1.53966 * 108.82954 * 175.67604 * 15 13 12 17 17 H 1.09004 * 112.99475 * 169.01430 * 16 15 13 18 18 C 1.55429 * 106.41458 * 293.82499 * 16 15 13 19 19 C 1.55164 * 100.35278 * 73.37792 * 18 16 15 20 20 H 1.08995 * 112.48690 * 162.66449 * 19 18 16 21 21 C 1.52994 * 109.32282 * 275.89002 * 13 12 10 22 22 N 1.47793 * 104.25923 * 40.54491 * 19 18 16 23 23 C 1.36929 * 125.85858 * 153.53720 * 22 19 18 24 24 H 1.07998 * 120.00107 * 5.04792 * 23 22 19 25 25 C 1.38813 * 120.00136 * 185.04246 * 23 22 19 26 26 N 1.31616 * 119.99723 * 5.12642 * 25 23 22 27 27 Si 1.86799 * 120.00278 * 185.12295 * 25 23 22 28 28 H 1.48504 * 109.47219 * 265.00696 * 27 25 23 29 29 H 1.48501 * 109.46787 * 25.00262 * 27 25 23 30 30 H 1.48494 * 109.47330 * 145.00033 * 27 25 23 31 31 C 1.47081 * 108.28574 * 333.80932 * 22 19 18 32 32 H 1.08998 * 109.47047 * 305.51563 * 1 2 3 33 33 H 1.08999 * 109.47110 * 65.52043 * 1 2 3 34 34 H 1.09003 * 109.47211 * 185.52098 * 1 2 3 35 35 H 1.09002 * 109.46921 * 180.02562 * 3 2 1 36 36 H 1.09002 * 109.47387 * 300.00159 * 3 2 1 37 37 H 1.08996 * 109.47204 * 60.00110 * 3 2 1 38 38 H 1.08995 * 109.47143 * 305.15758 * 4 2 1 39 39 H 1.08999 * 109.46690 * 65.15520 * 4 2 1 40 40 H 1.08996 * 109.47139 * 185.15637 * 4 2 1 41 41 H 1.07998 * 125.38145 * 180.02562 * 7 6 5 42 42 H 0.97001 * 119.99994 * 359.97438 * 12 10 9 43 43 H 1.09002 * 109.57435 * 55.87409 * 15 13 12 44 44 H 1.08994 * 109.68347 * 295.55102 * 15 13 12 45 45 H 1.09000 * 111.23820 * 315.59494 * 18 16 15 46 46 H 1.09007 * 111.27102 * 191.17004 * 18 16 15 47 47 H 1.09001 * 109.53264 * 64.75075 * 21 13 12 48 48 H 1.09001 * 109.53000 * 304.52295 * 21 13 12 49 49 H 0.97007 * 119.99670 * 179.97438 * 26 25 23 50 50 H 1.09000 * 109.98395 * 120.18893 * 31 22 19 51 51 H 1.09003 * 109.97532 * 241.47808 * 31 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 2.0324 -0.7104 1.2305 6 8 2.7792 -0.1786 2.2112 7 6 3.0155 -1.1328 3.1226 8 7 2.4387 -2.2352 2.7479 9 6 1.8147 -2.0129 1.5593 10 6 1.0429 -2.9963 0.7780 11 8 0.4459 -2.6451 -0.2216 12 7 0.9988 -4.2846 1.1715 13 6 0.2323 -5.2620 0.3948 14 1 0.3068 -5.0155 -0.6643 15 6 0.8077 -6.6602 0.6310 16 6 -0.0713 -7.6897 -0.1025 17 1 0.3775 -8.6823 -0.1409 18 6 -1.4545 -7.6705 0.6061 19 6 -2.0131 -6.3178 0.0907 20 1 -3.0922 -6.2357 0.2208 21 6 -1.2353 -5.2112 0.8244 22 7 -1.6112 -6.2760 -1.3309 23 6 -2.2539 -5.5896 -2.3263 24 1 -3.0891 -4.9479 -2.0874 25 6 -1.8318 -5.7183 -3.6424 26 7 -0.8809 -6.5755 -3.9476 27 14 -2.6133 -4.6749 -4.9803 28 1 -3.7081 -5.4404 -5.6289 29 1 -3.1652 -3.4334 -4.3807 30 1 -1.5880 -4.3213 -5.9946 31 6 -0.4062 -7.1034 -1.4944 32 1 -0.3633 0.5970 0.8365 33 1 -0.3633 0.4258 -0.9353 34 1 -0.3634 -1.0229 0.0989 35 1 3.1300 1.4424 -0.0005 36 1 1.6766 1.9563 -0.8900 37 1 1.6767 1.9563 0.8900 38 1 1.6032 -1.7188 -1.2966 39 1 1.7540 -0.1569 -2.1368 40 1 3.1260 -0.8020 -1.2043 41 1 3.5901 -1.0042 4.0280 42 1 1.4753 -4.5648 1.9686 43 1 0.8113 -6.8780 1.6990 44 1 1.8259 -6.7081 0.2450 45 1 -1.3426 -7.6642 1.6903 46 1 -2.0769 -8.5043 0.2811 47 1 -1.6563 -4.2389 0.5689 48 1 -1.3055 -5.3686 1.9007 49 1 -0.5862 -6.6658 -4.8675 50 1 -0.6005 -7.9085 -2.2030 51 1 0.4225 -6.4889 -1.8463 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047179337.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:30:01 Heat of formation + Delta-G solvation = 19.119373 kcal Electronic energy + Delta-G solvation = -32917.043826 eV Core-core repulsion = 28819.026124 eV Total energy + Delta-G solvation = -4098.017702 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -43.58016 -40.03629 -38.72844 -36.87248 -34.87481 -34.46135 -32.75749 -30.64277 -30.14445 -29.32285 -28.22208 -27.32950 -27.15421 -25.26633 -24.30435 -23.08583 -23.00166 -21.64707 -20.37123 -19.59027 -19.37530 -18.75970 -17.88803 -16.92950 -16.86218 -16.15845 -15.82887 -15.28430 -14.89483 -14.59991 -14.43071 -14.38345 -14.02571 -13.79436 -13.53420 -13.31572 -12.89096 -12.70164 -12.32929 -12.22670 -12.03911 -11.81777 -11.76403 -11.68014 -11.62118 -11.54707 -11.17355 -11.13512 -11.04183 -11.00018 -10.69626 -10.67354 -10.60851 -10.45244 -9.94412 -9.78248 -9.66971 -9.62624 -9.40014 -9.30510 -8.98294 -8.52304 -8.47205 -6.73372 -5.59514 -2.93808 1.09599 2.00549 2.42747 3.39716 3.47810 3.48122 3.53985 3.56407 3.96423 4.39493 4.59757 4.71304 4.87706 4.94385 5.05361 5.26342 5.27828 5.42679 5.47297 5.52572 5.59022 5.60581 5.61782 5.67456 5.84190 5.87864 5.92149 5.93429 5.97197 6.01399 6.03294 6.08877 6.13086 6.13818 6.15008 6.17969 6.27437 6.50150 6.60385 6.61055 6.67507 6.78952 6.91996 6.95102 7.01914 7.10986 7.34374 7.57663 7.73517 7.88202 7.92151 8.35322 8.55222 9.31810 9.92662 10.58961 11.50625 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011094 B = 0.004088 C = 0.003225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2523.274065 B = 6847.931199 C = 8679.402694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.024 3.976 3 C -0.145 4.145 4 C -0.161 4.161 5 C 0.056 3.944 6 O -0.198 6.198 7 C 0.162 3.838 8 N -0.462 5.462 9 C -0.072 4.072 10 C 0.590 3.410 11 O -0.504 6.504 12 N -0.708 5.708 13 C 0.148 3.852 14 H 0.115 0.885 15 C -0.112 4.112 16 C -0.117 4.117 17 H 0.082 0.918 18 C -0.129 4.129 19 C 0.157 3.843 20 H 0.065 0.935 21 C -0.134 4.134 22 N -0.594 5.594 23 C -0.218 4.218 24 H 0.076 0.924 25 C -0.007 4.007 26 N -0.922 5.922 27 Si 0.907 3.093 28 H -0.292 1.292 29 H -0.281 1.281 30 H -0.292 1.292 31 C 0.178 3.822 32 H 0.045 0.955 33 H 0.068 0.932 34 H 0.102 0.898 35 H 0.057 0.943 36 H 0.067 0.933 37 H 0.057 0.943 38 H 0.105 0.895 39 H 0.067 0.933 40 H 0.046 0.954 41 H 0.252 0.748 42 H 0.398 0.602 43 H 0.054 0.946 44 H 0.060 0.940 45 H 0.059 0.941 46 H 0.063 0.937 47 H 0.060 0.940 48 H 0.044 0.956 49 H 0.250 0.750 50 H 0.057 0.943 51 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.575 9.515 14.691 19.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.023 3.977 3 C -0.202 4.202 4 C -0.217 4.217 5 C -0.001 4.001 6 O -0.084 6.084 7 C -0.066 4.066 8 N -0.192 5.192 9 C -0.192 4.192 10 C 0.376 3.624 11 O -0.382 6.382 12 N -0.356 5.356 13 C 0.045 3.955 14 H 0.133 0.867 15 C -0.151 4.151 16 C -0.137 4.137 17 H 0.100 0.900 18 C -0.168 4.168 19 C 0.049 3.951 20 H 0.083 0.917 21 C -0.175 4.175 22 N -0.318 5.318 23 C -0.346 4.346 24 H 0.093 0.907 25 C -0.202 4.202 26 N -0.570 5.570 27 Si 0.738 3.262 28 H -0.219 1.219 29 H -0.206 1.206 30 H -0.218 1.218 31 C 0.053 3.947 32 H 0.064 0.936 33 H 0.087 0.913 34 H 0.120 0.880 35 H 0.076 0.924 36 H 0.086 0.914 37 H 0.076 0.924 38 H 0.124 0.876 39 H 0.086 0.914 40 H 0.065 0.935 41 H 0.268 0.732 42 H 0.232 0.768 43 H 0.073 0.927 44 H 0.078 0.922 45 H 0.077 0.923 46 H 0.081 0.919 47 H 0.078 0.922 48 H 0.062 0.938 49 H 0.060 0.940 50 H 0.075 0.925 51 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 8.180 9.235 14.037 18.688 hybrid contribution 0.191 1.146 -0.280 1.195 sum 8.371 10.381 13.757 19.160 Atomic orbital electron populations 1.22229 0.91373 1.06051 1.01667 1.19247 0.96925 0.94102 0.87386 1.21934 1.01214 0.94548 1.02514 1.22267 1.00278 1.04668 0.94508 1.23934 0.92849 0.92593 0.90707 1.84358 1.54587 1.41428 1.28040 1.27938 1.01509 0.81237 0.95921 1.70717 1.10492 1.27077 1.10876 1.21651 1.07399 0.94601 0.95572 1.16711 0.80197 0.81788 0.83725 1.90691 1.44403 1.78039 1.25029 1.46053 1.51698 1.07954 1.29941 1.21241 0.89958 0.86158 0.98120 0.86710 1.21962 0.99146 0.94412 0.99539 1.22823 0.94829 0.97304 0.98731 0.89990 1.23007 0.96947 0.98713 0.98117 1.21506 0.96081 0.91579 0.85975 0.91690 1.22591 0.95443 1.01474 0.98038 1.44617 1.28930 1.56328 1.01957 1.19008 1.11111 1.18788 0.85723 0.90651 1.24722 0.99202 0.99390 0.96934 1.69944 1.31922 1.37662 1.17493 0.86166 0.78117 0.79935 0.82009 1.21934 1.20640 1.21816 1.21318 0.88974 0.94425 0.89969 0.93563 0.91293 0.87956 0.92392 0.91357 0.92376 0.87649 0.91391 0.93471 0.73241 0.76757 0.92712 0.92170 0.92276 0.91857 0.92162 0.93765 0.93993 0.92488 0.94737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.15 8.20 37.16 0.30 -1.85 16 2 C 0.02 0.31 0.75 -155.66 -0.12 0.19 16 3 C -0.14 -1.48 8.07 37.15 0.30 -1.18 16 4 C -0.16 -2.26 8.20 37.16 0.30 -1.95 16 5 C 0.06 0.76 5.73 -35.08 -0.20 0.55 16 6 O -0.20 -2.25 10.19 6.51 0.07 -2.18 16 7 C 0.16 1.55 13.19 51.96 0.69 2.23 16 8 N -0.46 -5.97 11.07 -11.48 -0.13 -6.10 16 9 C -0.07 -1.08 6.81 -83.02 -0.57 -1.65 16 10 C 0.59 10.18 7.36 -12.52 -0.09 10.09 16 11 O -0.50 -9.99 9.65 5.27 0.05 -9.94 16 12 N -0.71 -11.45 5.07 -54.87 -0.28 -11.73 16 13 C 0.15 2.72 2.07 -67.92 -0.14 2.57 16 14 H 0.12 2.68 5.42 -51.93 -0.28 2.40 16 15 C -0.11 -1.82 4.96 -26.21 -0.13 -1.95 16 16 C -0.12 -2.11 4.32 -87.93 -0.38 -2.49 16 17 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 18 C -0.13 -2.23 6.18 -24.30 -0.15 -2.38 16 19 C 0.16 3.18 4.30 -65.62 -0.28 2.90 16 20 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 21 C -0.13 -2.51 5.27 -26.27 -0.14 -2.65 16 22 N -0.59 -14.74 2.42 -161.38 -0.39 -15.13 16 23 C -0.22 -6.07 10.29 -15.06 -0.15 -6.23 16 24 H 0.08 2.07 7.83 -52.49 -0.41 1.66 16 25 C -0.01 -0.19 5.47 -17.43 -0.10 -0.28 16 26 N -0.92 -27.18 10.43 55.49 0.58 -26.60 16 27 Si 0.91 22.74 29.56 -169.99 -5.02 17.72 16 28 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 29 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 30 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 31 C 0.18 4.20 4.15 -2.83 -0.01 4.19 16 32 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.10 1.72 4.65 -51.93 -0.24 1.48 16 35 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.11 1.84 4.58 -51.93 -0.24 1.60 16 39 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.25 0.97 8.06 -52.49 -0.42 0.54 16 42 H 0.40 5.62 8.34 -40.82 -0.34 5.28 16 43 H 0.05 0.76 7.97 -51.93 -0.41 0.34 16 44 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 45 H 0.06 0.87 7.75 -51.93 -0.40 0.47 16 46 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 47 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 48 H 0.04 0.72 8.00 -51.93 -0.42 0.31 16 49 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 50 H 0.06 1.53 7.01 -51.93 -0.36 1.16 16 51 H 0.03 0.91 6.55 -51.93 -0.34 0.57 16 LS Contribution 387.18 15.07 5.83 5.83 Total: -1.00 -31.92 387.18 -8.23 -40.15 By element: Atomic # 1 Polarization: 15.91 SS G_CDS: -8.08 Total: 7.83 kcal Atomic # 6 Polarization: 1.00 SS G_CDS: -0.86 Total: 0.14 kcal Atomic # 7 Polarization: -59.34 SS G_CDS: -0.22 Total: -59.55 kcal Atomic # 8 Polarization: -12.24 SS G_CDS: 0.12 Total: -12.13 kcal Atomic # 14 Polarization: 22.74 SS G_CDS: -5.02 Total: 17.72 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -31.92 -8.23 -40.15 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047179337.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.273 kcal (2) G-P(sol) polarization free energy of solvation -31.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.154 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds