Wall clock time and date at job start Wed Apr 1 2020 05:30:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47063 * 2 1 4 4 C 1.53005 * 109.47020 * 239.99835 * 2 1 3 5 5 C 1.50702 * 109.47110 * 119.99805 * 2 1 3 6 6 O 1.34250 * 126.52523 * 241.80737 * 5 2 1 7 7 C 1.34056 * 108.22654 * 179.97438 * 6 5 2 8 8 N 1.29937 * 109.24206 * 359.72188 * 7 6 5 9 9 C 1.36069 * 108.47390 * 0.44545 * 8 7 6 10 10 C 1.47422 * 126.44561 * 179.82138 * 9 8 7 11 11 O 1.21609 * 120.00178 * 174.34235 * 10 9 8 12 12 N 1.34779 * 120.00039 * 354.34181 * 10 9 8 13 13 C 1.46501 * 120.00259 * 180.02562 * 12 10 9 14 14 H 1.09001 * 109.17640 * 35.44174 * 13 12 10 15 15 C 1.53028 * 109.32922 * 154.99742 * 13 12 10 16 16 C 1.53966 * 108.82954 * 175.67604 * 15 13 12 17 17 H 1.09004 * 112.99475 * 169.01430 * 16 15 13 18 18 C 1.55429 * 106.41458 * 293.82499 * 16 15 13 19 19 C 1.55164 * 100.35278 * 73.37792 * 18 16 15 20 20 H 1.08995 * 112.48690 * 162.66449 * 19 18 16 21 21 C 1.52994 * 109.32282 * 275.89002 * 13 12 10 22 22 N 1.47793 * 104.25923 * 40.54491 * 19 18 16 23 23 C 1.36929 * 125.85858 * 153.53720 * 22 19 18 24 24 H 1.07998 * 120.00107 * 5.04792 * 23 22 19 25 25 C 1.38813 * 120.00136 * 185.04246 * 23 22 19 26 26 N 1.31616 * 119.99723 * 5.12642 * 25 23 22 27 27 Si 1.86799 * 120.00278 * 185.12295 * 25 23 22 28 28 H 1.48504 * 109.47219 * 265.00696 * 27 25 23 29 29 H 1.48501 * 109.46787 * 25.00262 * 27 25 23 30 30 H 1.48494 * 109.47330 * 145.00033 * 27 25 23 31 31 C 1.47081 * 108.28574 * 333.80932 * 22 19 18 32 32 H 1.08998 * 109.47047 * 305.51563 * 1 2 3 33 33 H 1.08999 * 109.47110 * 65.52043 * 1 2 3 34 34 H 1.09003 * 109.47211 * 185.52098 * 1 2 3 35 35 H 1.09002 * 109.46921 * 180.02562 * 3 2 1 36 36 H 1.09002 * 109.47387 * 300.00159 * 3 2 1 37 37 H 1.08996 * 109.47204 * 60.00110 * 3 2 1 38 38 H 1.08995 * 109.47143 * 305.15758 * 4 2 1 39 39 H 1.08999 * 109.46690 * 65.15520 * 4 2 1 40 40 H 1.08996 * 109.47139 * 185.15637 * 4 2 1 41 41 H 1.07998 * 125.38145 * 180.02562 * 7 6 5 42 42 H 0.97001 * 119.99994 * 359.97438 * 12 10 9 43 43 H 1.09002 * 109.57435 * 55.87409 * 15 13 12 44 44 H 1.08994 * 109.68347 * 295.55102 * 15 13 12 45 45 H 1.09000 * 111.23820 * 315.59494 * 18 16 15 46 46 H 1.09007 * 111.27102 * 191.17004 * 18 16 15 47 47 H 1.09001 * 109.53264 * 64.75075 * 21 13 12 48 48 H 1.09001 * 109.53000 * 304.52295 * 21 13 12 49 49 H 0.97007 * 119.99670 * 179.97438 * 26 25 23 50 50 H 1.09000 * 109.98395 * 120.18893 * 31 22 19 51 51 H 1.09003 * 109.97532 * 241.47808 * 31 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 2.0324 -0.7104 1.2305 6 8 2.7792 -0.1786 2.2112 7 6 3.0155 -1.1328 3.1226 8 7 2.4387 -2.2352 2.7479 9 6 1.8147 -2.0129 1.5593 10 6 1.0429 -2.9963 0.7780 11 8 0.4459 -2.6451 -0.2216 12 7 0.9988 -4.2846 1.1715 13 6 0.2323 -5.2620 0.3948 14 1 0.3068 -5.0155 -0.6643 15 6 0.8077 -6.6602 0.6310 16 6 -0.0713 -7.6897 -0.1025 17 1 0.3775 -8.6823 -0.1409 18 6 -1.4545 -7.6705 0.6061 19 6 -2.0131 -6.3178 0.0907 20 1 -3.0922 -6.2357 0.2208 21 6 -1.2353 -5.2112 0.8244 22 7 -1.6112 -6.2760 -1.3309 23 6 -2.2539 -5.5896 -2.3263 24 1 -3.0891 -4.9479 -2.0874 25 6 -1.8318 -5.7183 -3.6424 26 7 -0.8809 -6.5755 -3.9476 27 14 -2.6133 -4.6749 -4.9803 28 1 -3.7081 -5.4404 -5.6289 29 1 -3.1652 -3.4334 -4.3807 30 1 -1.5880 -4.3213 -5.9946 31 6 -0.4062 -7.1034 -1.4944 32 1 -0.3633 0.5970 0.8365 33 1 -0.3633 0.4258 -0.9353 34 1 -0.3634 -1.0229 0.0989 35 1 3.1300 1.4424 -0.0005 36 1 1.6766 1.9563 -0.8900 37 1 1.6767 1.9563 0.8900 38 1 1.6032 -1.7188 -1.2966 39 1 1.7540 -0.1569 -2.1368 40 1 3.1260 -0.8020 -1.2043 41 1 3.5901 -1.0042 4.0280 42 1 1.4753 -4.5648 1.9686 43 1 0.8113 -6.8780 1.6990 44 1 1.8259 -6.7081 0.2450 45 1 -1.3426 -7.6642 1.6903 46 1 -2.0769 -8.5043 0.2811 47 1 -1.6563 -4.2389 0.5689 48 1 -1.3055 -5.3686 1.9007 49 1 -0.5862 -6.6658 -4.8675 50 1 -0.6005 -7.9085 -2.2030 51 1 0.4225 -6.4889 -1.8463 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001047179337.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:30:00 Heat of formation + Delta-G solvation = -3.288875 kcal Electronic energy + Delta-G solvation = -32918.015521 eV Core-core repulsion = 28819.026124 eV Total energy + Delta-G solvation = -4098.989396 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -44.51119 -41.52688 -40.14855 -37.92748 -36.03466 -35.83993 -34.63469 -32.35739 -31.51029 -30.71445 -29.73755 -28.28665 -28.24936 -27.18789 -25.47054 -24.90900 -23.87668 -22.94155 -21.67654 -21.22783 -20.66664 -20.10200 -19.11896 -18.84301 -17.80352 -17.45905 -17.17451 -16.53746 -16.23980 -16.19416 -15.93545 -15.53675 -15.48856 -15.22371 -14.83241 -14.53576 -14.30994 -14.16839 -13.83061 -13.50499 -13.42403 -13.24235 -13.19848 -13.10247 -12.98137 -12.68199 -12.66121 -12.61368 -12.49379 -12.26283 -12.17101 -12.06156 -11.99502 -11.89435 -11.64838 -11.60967 -11.29716 -11.14056 -10.99335 -10.74130 -10.66370 -10.07031 -9.81954 -8.79900 -7.78395 -5.12621 0.05926 1.08454 1.41346 1.43964 1.51072 1.52415 2.16823 2.25976 2.51271 3.12529 3.38245 3.41350 3.66224 3.71198 3.81561 3.88427 3.88919 3.96363 4.06385 4.14246 4.38717 4.42391 4.47072 4.51221 4.53449 4.60519 4.67606 4.67948 4.72743 4.78889 4.80101 4.83285 4.90253 4.94428 4.98557 5.10559 5.14103 5.20308 5.22363 5.27053 5.32993 5.36962 5.42075 5.48713 5.52882 5.53862 5.70204 5.75411 5.88317 6.26816 6.35116 6.67334 7.16901 7.28129 7.85271 8.49998 9.29631 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011094 B = 0.004088 C = 0.003225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2523.274065 B = 6847.931199 C = 8679.402694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.023 3.977 3 C -0.137 4.137 4 C -0.157 4.157 5 C 0.051 3.949 6 O -0.193 6.193 7 C 0.193 3.807 8 N -0.489 5.489 9 C -0.092 4.092 10 C 0.581 3.419 11 O -0.539 6.539 12 N -0.699 5.699 13 C 0.158 3.842 14 H 0.055 0.945 15 C -0.103 4.103 16 C -0.105 4.105 17 H 0.109 0.891 18 C -0.113 4.113 19 C 0.142 3.858 20 H 0.063 0.937 21 C -0.121 4.121 22 N -0.612 5.612 23 C -0.225 4.225 24 H 0.070 0.930 25 C -0.063 4.063 26 N -0.948 5.948 27 Si 0.964 3.036 28 H -0.284 1.284 29 H -0.277 1.277 30 H -0.296 1.296 31 C 0.188 3.812 32 H 0.060 0.940 33 H 0.070 0.930 34 H 0.068 0.932 35 H 0.065 0.935 36 H 0.077 0.923 37 H 0.068 0.932 38 H 0.067 0.933 39 H 0.074 0.926 40 H 0.053 0.947 41 H 0.308 0.692 42 H 0.412 0.588 43 H 0.099 0.901 44 H 0.062 0.938 45 H 0.103 0.897 46 H 0.062 0.938 47 H 0.025 0.975 48 H 0.080 0.920 49 H 0.243 0.757 50 H 0.016 0.984 51 H -0.006 1.006 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.832 10.328 18.422 23.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.023 3.977 3 C -0.194 4.194 4 C -0.214 4.214 5 C -0.006 4.006 6 O -0.079 6.079 7 C -0.035 4.035 8 N -0.218 5.218 9 C -0.211 4.211 10 C 0.368 3.632 11 O -0.418 6.418 12 N -0.349 5.349 13 C 0.054 3.946 14 H 0.073 0.927 15 C -0.140 4.140 16 C -0.125 4.125 17 H 0.127 0.873 18 C -0.151 4.151 19 C 0.036 3.964 20 H 0.081 0.919 21 C -0.162 4.162 22 N -0.336 5.336 23 C -0.354 4.354 24 H 0.088 0.912 25 C -0.256 4.256 26 N -0.597 5.597 27 Si 0.793 3.207 28 H -0.211 1.211 29 H -0.202 1.202 30 H -0.223 1.223 31 C 0.063 3.937 32 H 0.079 0.921 33 H 0.089 0.911 34 H 0.086 0.914 35 H 0.084 0.916 36 H 0.096 0.904 37 H 0.087 0.913 38 H 0.086 0.914 39 H 0.093 0.907 40 H 0.072 0.928 41 H 0.323 0.677 42 H 0.248 0.752 43 H 0.117 0.883 44 H 0.081 0.919 45 H 0.122 0.878 46 H 0.081 0.919 47 H 0.044 0.956 48 H 0.099 0.901 49 H 0.052 0.948 50 H 0.034 0.966 51 H 0.012 0.988 Dipole moment (debyes) X Y Z Total from point charges 9.426 10.030 17.824 22.520 hybrid contribution -0.179 0.961 -1.364 1.679 sum 9.247 10.992 16.459 21.846 Atomic orbital electron populations 1.22134 0.92453 1.04052 1.02348 1.19210 0.96104 0.95738 0.86662 1.21882 1.01652 0.92348 1.03541 1.22171 1.00437 1.02900 0.95930 1.23895 0.93166 0.92241 0.91318 1.84391 1.54120 1.41618 1.27818 1.29255 0.98854 0.79567 0.95827 1.70692 1.11956 1.28798 1.10336 1.21336 1.08448 0.94584 0.96696 1.17144 0.80061 0.82404 0.83576 1.90708 1.45780 1.78697 1.26610 1.45850 1.51523 1.07396 1.30084 1.20870 0.90460 0.88075 0.95221 0.92694 1.21901 0.98505 0.91821 1.01819 1.22770 0.96179 0.98704 0.94841 0.87250 1.22961 0.95552 0.96161 1.00412 1.21829 0.96487 0.94386 0.83745 0.91891 1.22410 0.95099 0.98925 0.99749 1.44828 1.29246 1.56012 1.03517 1.19278 1.10726 1.18525 0.86894 0.91174 1.25433 1.00237 1.00945 0.98954 1.70160 1.33315 1.39130 1.17145 0.85267 0.77260 0.78704 0.79453 1.21079 1.20179 1.22325 1.21042 0.87338 0.92341 0.93005 0.92140 0.91097 0.91367 0.91582 0.90372 0.91340 0.91401 0.90665 0.92755 0.67708 0.75161 0.88308 0.91885 0.87836 0.91889 0.95648 0.90124 0.94799 0.96567 0.98814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.32 8.20 71.98 0.59 -3.73 16 2 C 0.02 0.60 0.75 -52.93 -0.04 0.56 16 3 C -0.14 -2.53 8.07 71.98 0.58 -1.95 16 4 C -0.16 -4.61 8.20 71.98 0.59 -4.02 16 5 C 0.05 1.34 5.73 25.19 0.14 1.48 16 6 O -0.19 -3.80 10.19 0.38 0.00 -3.79 16 7 C 0.19 2.92 13.19 130.52 1.72 4.64 16 8 N -0.49 -11.47 11.07 -305.14 -3.38 -14.85 16 9 C -0.09 -2.72 6.81 40.41 0.28 -2.44 16 10 C 0.58 20.85 7.36 86.66 0.64 21.49 16 11 O -0.54 -23.13 9.65 -4.06 -0.04 -23.17 16 12 N -0.70 -22.62 5.07 -445.76 -2.26 -24.88 16 13 C 0.16 5.87 2.07 45.00 0.09 5.96 16 14 H 0.05 2.76 5.42 -2.39 -0.01 2.75 16 15 C -0.10 -3.10 4.96 30.93 0.15 -2.95 16 16 C -0.11 -3.64 4.32 -9.05 -0.04 -3.68 16 17 H 0.11 3.24 8.14 -2.38 -0.02 3.22 16 18 C -0.11 -3.58 6.18 32.17 0.20 -3.38 16 19 C 0.14 5.77 4.30 45.78 0.20 5.96 16 20 H 0.06 2.55 8.14 -2.39 -0.02 2.53 16 21 C -0.12 -4.50 5.27 30.89 0.16 -4.34 16 22 N -0.61 -31.81 2.42 -664.49 -1.61 -33.42 16 23 C -0.22 -13.22 10.29 84.04 0.86 -12.36 16 24 H 0.07 4.07 7.83 -2.91 -0.02 4.05 16 25 C -0.06 -3.77 5.47 84.86 0.46 -3.31 16 26 N -0.95 -59.34 10.43 21.65 0.23 -59.11 16 27 Si 0.96 49.02 29.56 68.60 2.03 51.05 16 28 H -0.28 -13.96 7.11 99.48 0.71 -13.26 16 29 H -0.28 -13.69 7.11 99.48 0.71 -12.98 16 30 H -0.30 -15.19 7.11 99.48 0.71 -14.48 16 31 C 0.19 9.32 4.15 86.85 0.36 9.68 16 32 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 34 H 0.07 2.46 4.65 -2.39 -0.01 2.45 16 35 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.07 2.57 4.58 -2.39 -0.01 2.56 16 39 H 0.07 2.00 8.14 -2.39 -0.02 1.99 16 40 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 41 H 0.31 0.49 8.06 -2.91 -0.02 0.47 16 42 H 0.41 10.95 8.34 -92.71 -0.77 10.17 16 43 H 0.10 2.21 7.97 -2.39 -0.02 2.20 16 44 H 0.06 1.89 8.14 -2.39 -0.02 1.88 16 45 H 0.10 2.46 7.75 -2.39 -0.02 2.44 16 46 H 0.06 2.03 8.14 -2.38 -0.02 2.01 16 47 H 0.02 1.09 8.14 -2.39 -0.02 1.07 16 48 H 0.08 2.41 8.00 -2.39 -0.02 2.40 16 49 H 0.24 14.88 8.31 -92.70 -0.77 14.10 16 50 H 0.02 0.92 7.01 -2.39 -0.02 0.90 16 51 H -0.01 -0.36 6.55 -2.39 -0.02 -0.37 16 Total: -1.00 -78.35 387.18 2.10 -76.25 By element: Atomic # 1 Polarization: 24.15 SS G_CDS: 0.17 Total: 24.33 kcal Atomic # 6 Polarization: 0.65 SS G_CDS: 6.95 Total: 7.60 kcal Atomic # 7 Polarization: -125.24 SS G_CDS: -7.02 Total: -132.26 kcal Atomic # 8 Polarization: -26.93 SS G_CDS: -0.04 Total: -26.97 kcal Atomic # 14 Polarization: 49.02 SS G_CDS: 2.03 Total: 51.05 kcal Total: -78.35 2.10 -76.25 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047179337.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.958 kcal (2) G-P(sol) polarization free energy of solvation -78.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds