Wall clock time and date at job start Wed Apr 1 2020 05:11:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52994 * 109.47264 * 2 1 4 4 C 1.50705 * 109.46884 * 120.00306 * 2 1 3 5 5 O 1.33492 * 126.82968 * 300.01693 * 4 2 1 6 6 N 1.20656 * 113.15547 * 179.97438 * 5 4 2 7 7 C 1.30008 * 112.30520 * 359.72151 * 6 5 4 8 8 C 1.37363 * 126.82648 * 120.00375 * 4 2 1 9 9 C 1.47397 * 128.56810 * 359.97438 * 8 4 2 10 10 O 1.21603 * 119.99719 * 0.02562 * 9 8 4 11 11 N 1.34771 * 119.99674 * 180.02562 * 9 8 4 12 12 C 1.46507 * 119.99573 * 180.27593 * 11 9 8 13 13 C 1.53001 * 109.46944 * 179.72184 * 12 11 9 14 14 H 1.08988 * 109.43599 * 299.70572 * 13 12 11 15 15 C 1.53153 * 109.43115 * 59.62064 * 13 12 11 16 16 C 1.53701 * 108.87785 * 66.17123 * 15 13 12 17 17 H 1.08994 * 112.09952 * 187.61637 * 16 15 13 18 18 C 1.54612 * 107.83055 * 312.23355 * 16 15 13 19 19 C 1.54303 * 104.75302 * 88.67197 * 18 16 15 20 20 C 1.54600 * 104.75282 * 359.97438 * 19 18 16 21 21 H 1.09007 * 112.19702 * 146.80260 * 20 19 18 22 22 C 1.53146 * 109.43289 * 179.83909 * 13 12 11 23 23 N 1.48296 * 104.26100 * 25.14686 * 20 19 18 24 24 C 1.36932 * 128.21454 * 138.38213 * 23 20 19 25 25 H 1.08004 * 119.99924 * 212.97383 * 24 23 20 26 26 C 1.38810 * 120.00249 * 32.96991 * 24 23 20 27 27 N 1.31621 * 119.99586 * 5.14982 * 26 24 23 28 28 Si 1.86799 * 120.00419 * 185.14618 * 26 24 23 29 29 H 1.48503 * 109.46887 * 60.00193 * 28 26 24 30 30 H 1.48503 * 109.47456 * 180.02562 * 28 26 24 31 31 H 1.48497 * 109.47249 * 300.00582 * 28 26 24 32 32 H 1.09004 * 109.46698 * 300.00011 * 1 2 3 33 33 H 1.08996 * 109.47061 * 60.00059 * 1 2 3 34 34 H 1.08996 * 109.47351 * 180.02562 * 1 2 3 35 35 H 1.08995 * 109.46929 * 239.99970 * 2 1 3 36 36 H 1.08995 * 109.47215 * 180.02562 * 3 2 1 37 37 H 1.09003 * 109.47372 * 299.99906 * 3 2 1 38 38 H 1.09004 * 109.47271 * 60.00340 * 3 2 1 39 39 H 1.07996 * 127.34179 * 180.30526 * 7 6 5 40 40 H 0.96996 * 120.00510 * 359.97438 * 11 9 8 41 41 H 1.08996 * 109.47179 * 299.72730 * 12 11 9 42 42 H 1.09000 * 109.46963 * 59.72507 * 12 11 9 43 43 H 1.09007 * 109.56464 * 185.98979 * 15 13 12 44 44 H 1.09000 * 109.56731 * 306.35286 * 15 13 12 45 45 H 1.09009 * 110.37679 * 207.48950 * 18 16 15 46 46 H 1.08999 * 110.37888 * 329.84793 * 18 16 15 47 47 H 1.09004 * 110.38154 * 241.17076 * 19 18 16 48 48 H 1.09000 * 110.38273 * 118.81130 * 19 18 16 49 49 H 1.09001 * 109.57037 * 53.64609 * 22 13 12 50 50 H 1.08998 * 109.56918 * 174.01094 * 22 13 12 51 51 H 0.97005 * 119.99663 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7105 1.2305 5 8 1.7951 -0.3756 2.5007 6 7 2.3199 -1.1187 3.2933 7 6 2.9861 -2.0710 2.7105 8 6 2.8251 -1.8316 1.2679 9 6 3.3733 -2.6075 0.1409 10 8 3.1347 -2.2699 -1.0027 11 7 4.1389 -3.6910 0.3780 12 6 4.6888 -4.4586 -0.7422 13 6 5.5196 -5.6245 -0.2024 14 1 6.3382 -5.2365 0.4035 15 6 4.6314 -6.5273 0.6589 16 6 3.5734 -7.1872 -0.2397 17 1 2.8303 -7.7372 0.3378 18 6 2.9459 -6.0832 -1.1216 19 6 3.8450 -6.0226 -2.3742 20 6 4.9315 -7.0952 -2.1312 21 1 5.2551 -7.5707 -3.0572 22 6 6.0906 -6.4287 -1.3740 23 7 4.2933 -8.0574 -1.2005 24 6 4.3541 -9.4251 -1.2231 25 1 3.5078 -10.0088 -0.8922 26 6 5.5035 -10.0615 -1.6712 27 7 6.5701 -9.3541 -1.9785 28 14 5.5365 -11.9218 -1.8383 29 1 4.4903 -12.3509 -2.8008 30 1 6.8698 -12.3509 -2.3316 31 1 5.2757 -12.5423 -0.5146 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 -0.3634 -1.0276 0.0005 35 1 1.8933 -0.5138 -0.8900 36 1 3.1300 1.4424 -0.0005 37 1 1.6768 1.9563 -0.8900 38 1 1.6768 1.9563 0.8900 39 1 3.5412 -2.8670 3.1843 40 1 4.3296 -3.9600 1.2902 41 1 3.8729 -4.8457 -1.3526 42 1 5.3219 -3.8120 -1.3497 43 1 5.2420 -7.2975 1.1303 44 1 4.1381 -5.9298 1.4255 45 1 1.9265 -6.3522 -1.3986 46 1 2.9584 -5.1269 -0.5987 47 1 4.2997 -5.0364 -2.4678 48 1 3.2680 -6.2618 -3.2675 49 1 6.6301 -5.7615 -2.0463 50 1 6.7678 -7.1944 -0.9956 51 1 7.3731 -9.7988 -2.2920 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001048579126.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:11:10 Heat of formation + Delta-G solvation = 131.303939 kcal Electronic energy + Delta-G solvation = -32347.047128 eV Core-core repulsion = 28253.894114 eV Total energy + Delta-G solvation = -4093.153014 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -45.11299 -41.27252 -38.98347 -36.25129 -34.74031 -33.91107 -32.74102 -31.48314 -31.06600 -30.62644 -29.70846 -27.50074 -26.93074 -24.84095 -23.84678 -23.33729 -23.04614 -21.20803 -20.70490 -20.33444 -19.41077 -18.84341 -17.88510 -17.86862 -16.99234 -16.62132 -16.06622 -15.47196 -15.23201 -14.79327 -14.72882 -14.38023 -14.00655 -13.80229 -13.56221 -13.44627 -13.01470 -12.73592 -12.66324 -12.53418 -12.12952 -11.96689 -11.75140 -11.69448 -11.60447 -11.51380 -11.41335 -11.22188 -11.07806 -10.88755 -10.79538 -10.60459 -10.53855 -10.19209 -10.05556 -9.78202 -9.69124 -9.65588 -9.43937 -9.37434 -9.20179 -8.55630 -8.19418 -6.60066 -5.85376 -3.29879 0.91536 1.60321 2.59605 3.20810 3.29359 3.35172 3.40507 3.41268 4.02720 4.08386 4.37365 4.42955 4.59250 4.73800 4.91975 5.07194 5.21932 5.28262 5.30235 5.31591 5.40412 5.48036 5.49873 5.54777 5.57175 5.61244 5.72353 5.75624 5.80650 5.88934 5.89163 5.99807 6.07571 6.10130 6.17502 6.29388 6.40876 6.41100 6.56179 6.63241 6.66406 6.73272 6.87925 6.97157 7.08758 7.15049 7.45601 7.54842 7.67796 7.78915 7.95949 8.23602 8.27919 9.09314 9.69348 10.59440 11.27730 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.024224 B = 0.002546 C = 0.002489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.594394 B =10994.464410 C =11248.194203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.029 4.029 3 C -0.147 4.147 4 C 0.054 3.946 5 O 0.092 5.908 6 N -0.356 5.356 7 C 0.021 3.979 8 C -0.259 4.259 9 C 0.591 3.409 10 O -0.538 6.538 11 N -0.709 5.709 12 C 0.002 3.998 13 C -0.085 4.085 14 H 0.050 0.950 15 C -0.122 4.122 16 C 0.149 3.851 17 H 0.064 0.936 18 C -0.162 4.162 19 C -0.172 4.172 20 C 0.187 3.813 21 H 0.082 0.918 22 C -0.112 4.112 23 N -0.579 5.579 24 C -0.235 4.235 25 H 0.065 0.935 26 C 0.011 3.989 27 N -0.899 5.899 28 Si 0.906 3.094 29 H -0.284 1.284 30 H -0.290 1.290 31 H -0.283 1.283 32 H 0.061 0.939 33 H 0.072 0.928 34 H 0.061 0.939 35 H 0.131 0.869 36 H 0.060 0.940 37 H 0.071 0.929 38 H 0.061 0.939 39 H 0.200 0.800 40 H 0.394 0.606 41 H 0.197 0.803 42 H 0.052 0.948 43 H 0.064 0.936 44 H 0.037 0.963 45 H 0.051 0.949 46 H 0.093 0.907 47 H 0.089 0.911 48 H 0.054 0.946 49 H 0.036 0.964 50 H 0.097 0.903 51 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.321 18.291 5.351 20.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.048 4.048 3 C -0.205 4.205 4 C -0.010 4.010 5 O 0.032 5.968 6 N -0.062 5.062 7 C -0.162 4.162 8 C -0.267 4.267 9 C 0.377 3.623 10 O -0.417 6.417 11 N -0.359 5.359 12 C -0.116 4.116 13 C -0.104 4.104 14 H 0.069 0.931 15 C -0.162 4.162 16 C 0.041 3.959 17 H 0.082 0.918 18 C -0.200 4.200 19 C -0.210 4.210 20 C 0.080 3.920 21 H 0.100 0.900 22 C -0.152 4.152 23 N -0.300 5.300 24 C -0.364 4.364 25 H 0.083 0.917 26 C -0.189 4.189 27 N -0.542 5.542 28 Si 0.736 3.264 29 H -0.210 1.210 30 H -0.216 1.216 31 H -0.209 1.209 32 H 0.080 0.920 33 H 0.091 0.909 34 H 0.080 0.920 35 H 0.149 0.851 36 H 0.079 0.921 37 H 0.090 0.910 38 H 0.080 0.920 39 H 0.217 0.783 40 H 0.228 0.772 41 H 0.212 0.788 42 H 0.070 0.930 43 H 0.083 0.917 44 H 0.056 0.944 45 H 0.069 0.931 46 H 0.111 0.889 47 H 0.107 0.893 48 H 0.073 0.927 49 H 0.055 0.945 50 H 0.115 0.885 51 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -7.527 18.626 5.731 20.891 hybrid contribution 0.894 -1.568 0.090 1.807 sum -6.633 17.058 5.821 19.205 Atomic orbital electron populations 1.21868 0.92843 1.02888 1.02917 1.20263 0.96911 0.96370 0.91280 1.21865 1.01699 0.93979 1.02932 1.24905 0.94555 0.94187 0.87349 1.84543 1.55635 1.43932 1.12661 1.73657 1.11842 1.04501 1.16152 1.26401 1.00267 0.99191 0.90332 1.22244 1.08822 1.01285 0.94315 1.16756 0.78751 0.80143 0.86671 1.90741 1.60218 1.69123 1.21659 1.46205 1.50521 1.27940 1.11191 1.25360 1.04255 0.92306 0.89656 1.21274 0.96520 0.94160 0.98461 0.93123 1.22171 0.98744 0.98188 0.97055 1.21548 0.92893 0.90519 0.90903 0.91797 1.23397 0.98551 1.00550 0.97512 1.23498 0.99548 1.00968 0.97030 1.21186 0.89422 0.87373 0.94027 0.89978 1.22099 0.99659 0.98247 0.95181 1.44968 1.58177 1.00576 1.26319 1.18780 0.96767 0.79679 1.41207 0.91731 1.25227 0.94867 0.97730 1.01052 1.69870 1.02343 1.34114 1.47893 0.86332 0.76738 0.85392 0.77981 1.20991 1.21616 1.20938 0.91996 0.90941 0.91959 0.85134 0.92120 0.90953 0.91982 0.78314 0.77184 0.78826 0.93011 0.91677 0.94426 0.93068 0.88909 0.89316 0.92691 0.94484 0.88489 0.93567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.18 37.16 0.34 -0.77 16 2 C -0.03 -0.27 3.29 -91.77 -0.30 -0.57 16 3 C -0.15 -1.08 9.18 37.15 0.34 -0.74 16 4 C 0.05 0.60 6.06 -34.62 -0.21 0.39 16 5 O 0.09 1.03 11.06 18.66 0.21 1.24 16 6 N -0.36 -4.20 12.01 31.81 0.38 -3.82 16 7 C 0.02 0.22 11.95 -14.72 -0.18 0.04 16 8 C -0.26 -3.08 6.47 -102.89 -0.67 -3.75 16 9 C 0.59 8.14 7.57 -12.53 -0.09 8.04 16 10 O -0.54 -8.71 14.86 5.27 0.08 -8.63 16 11 N -0.71 -9.21 4.35 -61.39 -0.27 -9.48 16 12 C 0.00 0.04 2.69 -4.04 -0.01 0.03 16 13 C -0.09 -1.43 2.77 -90.46 -0.25 -1.68 16 14 H 0.05 0.80 8.14 -51.94 -0.42 0.38 16 15 C -0.12 -2.12 5.27 -26.29 -0.14 -2.25 16 16 C 0.15 2.92 4.32 -65.74 -0.28 2.63 16 17 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 18 C -0.16 -2.81 5.72 -25.20 -0.14 -2.96 16 19 C -0.17 -3.14 5.72 -25.21 -0.14 -3.29 16 20 C 0.19 4.07 3.10 -65.76 -0.20 3.87 16 21 H 0.08 2.04 7.52 -51.92 -0.39 1.65 16 22 C -0.11 -2.26 5.17 -26.31 -0.14 -2.40 16 23 N -0.58 -13.68 2.73 -152.79 -0.42 -14.09 16 24 C -0.24 -6.22 10.29 -15.06 -0.16 -6.38 16 25 H 0.07 1.70 7.83 -52.48 -0.41 1.28 16 26 C 0.01 0.29 5.43 -17.43 -0.09 0.19 16 27 N -0.90 -24.47 10.34 55.49 0.57 -23.89 16 28 Si 0.91 21.09 29.56 -169.99 -5.02 16.07 16 29 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 30 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 31 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 32 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.13 1.43 5.89 -51.93 -0.31 1.13 16 36 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.20 1.47 7.88 -52.49 -0.41 1.05 16 40 H 0.39 4.31 6.65 -40.82 -0.27 4.04 16 41 H 0.20 3.16 1.12 -165.91 -0.19 2.98 16 42 H 0.05 0.82 8.01 -51.93 -0.42 0.41 16 43 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 44 H 0.04 0.53 6.69 -51.93 -0.35 0.19 16 45 H 0.05 0.88 8.14 -51.92 -0.42 0.46 16 46 H 0.09 1.48 3.92 -51.93 -0.20 1.28 16 47 H 0.09 1.50 4.85 -51.93 -0.25 1.25 16 48 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 49 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 50 H 0.10 2.31 6.80 -51.93 -0.35 1.96 16 51 H 0.25 6.81 8.31 -40.82 -0.34 6.47 16 LS Contribution 383.60 15.07 5.78 5.78 Total: -1.00 -29.20 383.60 -8.77 -37.97 By element: Atomic # 1 Polarization: 16.20 SS G_CDS: -7.76 Total: 8.44 kcal Atomic # 6 Polarization: -7.25 SS G_CDS: -2.33 Total: -9.58 kcal Atomic # 7 Polarization: -51.55 SS G_CDS: 0.27 Total: -51.28 kcal Atomic # 8 Polarization: -7.68 SS G_CDS: 0.28 Total: -7.39 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -29.20 -8.77 -37.97 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048579126.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.274 kcal (2) G-P(sol) polarization free energy of solvation -29.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 140.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.970 kcal (6) G-S(sol) free energy of system = (1) + (5) 131.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds