Wall clock time and date at job start Wed Apr 1 2020 05:11:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52994 * 109.47264 * 2 1 4 4 C 1.50705 * 109.46884 * 120.00306 * 2 1 3 5 5 O 1.33492 * 126.82968 * 300.01693 * 4 2 1 6 6 N 1.20656 * 113.15547 * 179.97438 * 5 4 2 7 7 C 1.30008 * 112.30520 * 359.72151 * 6 5 4 8 8 C 1.37363 * 126.82648 * 120.00375 * 4 2 1 9 9 C 1.47397 * 128.56810 * 359.97438 * 8 4 2 10 10 O 1.21603 * 119.99719 * 0.02562 * 9 8 4 11 11 N 1.34771 * 119.99674 * 180.02562 * 9 8 4 12 12 C 1.46507 * 119.99573 * 180.27593 * 11 9 8 13 13 C 1.53001 * 109.46944 * 179.72184 * 12 11 9 14 14 H 1.08988 * 109.43599 * 299.70572 * 13 12 11 15 15 C 1.53153 * 109.43115 * 59.62064 * 13 12 11 16 16 C 1.53701 * 108.87785 * 66.17123 * 15 13 12 17 17 H 1.08994 * 112.09952 * 187.61637 * 16 15 13 18 18 C 1.54612 * 107.83055 * 312.23355 * 16 15 13 19 19 C 1.54303 * 104.75302 * 88.67197 * 18 16 15 20 20 C 1.54600 * 104.75282 * 359.97438 * 19 18 16 21 21 H 1.09007 * 112.19702 * 146.80260 * 20 19 18 22 22 C 1.53146 * 109.43289 * 179.83909 * 13 12 11 23 23 N 1.48296 * 104.26100 * 25.14686 * 20 19 18 24 24 C 1.36932 * 128.21454 * 138.38213 * 23 20 19 25 25 H 1.08004 * 119.99924 * 212.97383 * 24 23 20 26 26 C 1.38810 * 120.00249 * 32.96991 * 24 23 20 27 27 N 1.31621 * 119.99586 * 5.14982 * 26 24 23 28 28 Si 1.86799 * 120.00419 * 185.14618 * 26 24 23 29 29 H 1.48503 * 109.46887 * 60.00193 * 28 26 24 30 30 H 1.48503 * 109.47456 * 180.02562 * 28 26 24 31 31 H 1.48497 * 109.47249 * 300.00582 * 28 26 24 32 32 H 1.09004 * 109.46698 * 300.00011 * 1 2 3 33 33 H 1.08996 * 109.47061 * 60.00059 * 1 2 3 34 34 H 1.08996 * 109.47351 * 180.02562 * 1 2 3 35 35 H 1.08995 * 109.46929 * 239.99970 * 2 1 3 36 36 H 1.08995 * 109.47215 * 180.02562 * 3 2 1 37 37 H 1.09003 * 109.47372 * 299.99906 * 3 2 1 38 38 H 1.09004 * 109.47271 * 60.00340 * 3 2 1 39 39 H 1.07996 * 127.34179 * 180.30526 * 7 6 5 40 40 H 0.96996 * 120.00510 * 359.97438 * 11 9 8 41 41 H 1.08996 * 109.47179 * 299.72730 * 12 11 9 42 42 H 1.09000 * 109.46963 * 59.72507 * 12 11 9 43 43 H 1.09007 * 109.56464 * 185.98979 * 15 13 12 44 44 H 1.09000 * 109.56731 * 306.35286 * 15 13 12 45 45 H 1.09009 * 110.37679 * 207.48950 * 18 16 15 46 46 H 1.08999 * 110.37888 * 329.84793 * 18 16 15 47 47 H 1.09004 * 110.38154 * 241.17076 * 19 18 16 48 48 H 1.09000 * 110.38273 * 118.81130 * 19 18 16 49 49 H 1.09001 * 109.57037 * 53.64609 * 22 13 12 50 50 H 1.08998 * 109.56918 * 174.01094 * 22 13 12 51 51 H 0.97005 * 119.99663 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7105 1.2305 5 8 1.7951 -0.3756 2.5007 6 7 2.3199 -1.1187 3.2933 7 6 2.9861 -2.0710 2.7105 8 6 2.8251 -1.8316 1.2679 9 6 3.3733 -2.6075 0.1409 10 8 3.1347 -2.2699 -1.0027 11 7 4.1389 -3.6910 0.3780 12 6 4.6888 -4.4586 -0.7422 13 6 5.5196 -5.6245 -0.2024 14 1 6.3382 -5.2365 0.4035 15 6 4.6314 -6.5273 0.6589 16 6 3.5734 -7.1872 -0.2397 17 1 2.8303 -7.7372 0.3378 18 6 2.9459 -6.0832 -1.1216 19 6 3.8450 -6.0226 -2.3742 20 6 4.9315 -7.0952 -2.1312 21 1 5.2551 -7.5707 -3.0572 22 6 6.0906 -6.4287 -1.3740 23 7 4.2933 -8.0574 -1.2005 24 6 4.3541 -9.4251 -1.2231 25 1 3.5078 -10.0088 -0.8922 26 6 5.5035 -10.0615 -1.6712 27 7 6.5701 -9.3541 -1.9785 28 14 5.5365 -11.9218 -1.8383 29 1 4.4903 -12.3509 -2.8008 30 1 6.8698 -12.3509 -2.3316 31 1 5.2757 -12.5423 -0.5146 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 -0.3634 -1.0276 0.0005 35 1 1.8933 -0.5138 -0.8900 36 1 3.1300 1.4424 -0.0005 37 1 1.6768 1.9563 -0.8900 38 1 1.6768 1.9563 0.8900 39 1 3.5412 -2.8670 3.1843 40 1 4.3296 -3.9600 1.2902 41 1 3.8729 -4.8457 -1.3526 42 1 5.3219 -3.8120 -1.3497 43 1 5.2420 -7.2975 1.1303 44 1 4.1381 -5.9298 1.4255 45 1 1.9265 -6.3522 -1.3986 46 1 2.9584 -5.1269 -0.5987 47 1 4.2997 -5.0364 -2.4678 48 1 3.2680 -6.2618 -3.2675 49 1 6.6301 -5.7615 -2.0463 50 1 6.7678 -7.1944 -0.9956 51 1 7.3731 -9.7988 -2.2920 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001048579126.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:11:09 Heat of formation + Delta-G solvation = 115.687451 kcal Electronic energy + Delta-G solvation = -32347.724310 eV Core-core repulsion = 28253.894114 eV Total energy + Delta-G solvation = -4093.830196 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -45.94668 -42.70827 -40.15563 -36.98885 -36.11089 -34.90640 -34.33542 -32.93689 -32.29656 -31.88026 -31.33949 -28.45021 -28.06595 -26.09542 -25.07320 -24.76847 -24.20234 -22.32291 -21.96113 -21.35292 -20.92246 -20.41382 -19.01295 -18.72198 -18.51405 -17.68080 -17.24524 -16.86161 -16.41094 -16.08791 -15.96953 -15.62476 -15.13671 -14.76627 -14.61347 -14.49540 -14.34652 -14.19914 -14.11601 -13.68267 -13.33269 -13.10641 -13.06444 -13.04958 -12.84114 -12.78215 -12.68588 -12.47795 -12.37412 -12.26153 -12.22218 -11.98823 -11.81860 -11.52799 -11.44758 -11.26079 -11.05182 -10.96447 -10.82592 -10.73306 -10.52195 -10.45445 -9.47134 -8.47989 -7.85996 -5.31196 0.04015 0.78231 1.47487 1.48130 1.54442 1.73903 2.19298 2.27258 2.50474 3.26081 3.27859 3.31883 3.53672 3.64300 3.90364 3.97481 3.99027 4.06319 4.11254 4.16077 4.27817 4.29638 4.33539 4.41330 4.59515 4.62828 4.63906 4.76110 4.79079 4.81161 4.82656 4.92335 4.93095 4.94381 5.03813 5.06531 5.12210 5.14532 5.22639 5.31379 5.32673 5.37921 5.43874 5.51298 5.56664 5.59428 5.65926 5.76121 6.01078 6.37184 6.54491 7.13020 7.13232 7.20025 7.75246 8.66568 9.25131 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.024224 B = 0.002546 C = 0.002489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.594394 B =10994.464410 C =11248.194203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.031 4.031 3 C -0.144 4.144 4 C 0.063 3.937 5 O 0.088 5.912 6 N -0.375 5.375 7 C 0.034 3.966 8 C -0.280 4.280 9 C 0.594 3.406 10 O -0.564 6.564 11 N -0.701 5.701 12 C 0.016 3.984 13 C -0.075 4.075 14 H 0.068 0.932 15 C -0.114 4.114 16 C 0.140 3.860 17 H 0.061 0.939 18 C -0.149 4.149 19 C -0.163 4.163 20 C 0.182 3.818 21 H 0.039 0.961 22 C -0.106 4.106 23 N -0.602 5.602 24 C -0.248 4.248 25 H 0.060 0.940 26 C -0.038 4.038 27 N -0.919 5.919 28 Si 0.964 3.036 29 H -0.282 1.282 30 H -0.294 1.294 31 H -0.278 1.278 32 H 0.069 0.931 33 H 0.088 0.912 34 H 0.051 0.949 35 H 0.113 0.887 36 H 0.051 0.949 37 H 0.088 0.912 38 H 0.069 0.931 39 H 0.230 0.770 40 H 0.407 0.593 41 H 0.187 0.813 42 H 0.051 0.949 43 H 0.036 0.964 44 H 0.079 0.921 45 H 0.053 0.947 46 H 0.115 0.885 47 H 0.109 0.891 48 H 0.052 0.948 49 H 0.046 0.954 50 H 0.056 0.944 51 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.459 20.195 6.655 22.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.051 4.051 3 C -0.201 4.201 4 C -0.002 4.002 5 O 0.031 5.969 6 N -0.083 5.083 7 C -0.149 4.149 8 C -0.288 4.288 9 C 0.382 3.618 10 O -0.445 6.445 11 N -0.352 5.352 12 C -0.103 4.103 13 C -0.093 4.093 14 H 0.086 0.914 15 C -0.153 4.153 16 C 0.034 3.966 17 H 0.080 0.920 18 C -0.187 4.187 19 C -0.201 4.201 20 C 0.075 3.925 21 H 0.057 0.943 22 C -0.146 4.146 23 N -0.324 5.324 24 C -0.378 4.378 25 H 0.078 0.922 26 C -0.235 4.235 27 N -0.564 5.564 28 Si 0.793 3.207 29 H -0.208 1.208 30 H -0.221 1.221 31 H -0.204 1.204 32 H 0.088 0.912 33 H 0.107 0.893 34 H 0.070 0.930 35 H 0.131 0.869 36 H 0.070 0.930 37 H 0.107 0.893 38 H 0.089 0.911 39 H 0.246 0.754 40 H 0.244 0.756 41 H 0.202 0.798 42 H 0.069 0.931 43 H 0.055 0.945 44 H 0.097 0.903 45 H 0.072 0.928 46 H 0.133 0.867 47 H 0.126 0.874 48 H 0.071 0.929 49 H 0.064 0.936 50 H 0.075 0.925 51 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -8.694 20.557 7.064 23.411 hybrid contribution 1.213 -2.129 -0.328 2.472 sum -7.481 18.429 6.736 20.999 Atomic orbital electron populations 1.21868 0.91516 1.02627 1.04189 1.20333 0.97974 0.97012 0.89731 1.21862 1.01130 0.92930 1.04202 1.25286 0.93457 0.93732 0.87736 1.84543 1.55774 1.44005 1.12599 1.73655 1.12814 1.05225 1.16594 1.26863 0.99306 0.99154 0.89552 1.22110 1.10166 1.01982 0.94502 1.16900 0.78253 0.79952 0.86722 1.90740 1.61147 1.69778 1.22882 1.45977 1.50313 1.27628 1.11256 1.24928 1.03484 0.91759 0.90171 1.21120 0.97117 0.94043 0.97064 0.91398 1.22051 0.97860 0.97926 0.97475 1.21770 0.93209 0.90603 0.91041 0.92032 1.23325 0.98103 1.00632 0.96591 1.23450 0.98495 1.00587 0.97537 1.21138 0.91082 0.87923 0.92358 0.94255 1.21896 0.98537 0.97684 0.96479 1.45161 1.58750 1.00320 1.28197 1.19023 0.96628 0.81493 1.40669 0.92217 1.25872 0.94788 1.01310 1.01565 1.70041 1.02458 1.35032 1.48837 0.85406 0.76234 0.81172 0.77884 1.20800 1.22061 1.20412 0.91155 0.89286 0.92965 0.86880 0.92992 0.89290 0.91148 0.75358 0.75637 0.79822 0.93070 0.94478 0.90295 0.92774 0.86741 0.87368 0.92927 0.93559 0.92504 0.94322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.87 9.18 71.98 0.66 -1.21 16 2 C -0.03 -0.52 3.29 -11.54 -0.04 -0.55 16 3 C -0.14 -1.81 9.18 71.98 0.66 -1.15 16 4 C 0.06 1.25 6.06 25.48 0.15 1.40 16 5 O 0.09 1.79 11.06 77.00 0.85 2.64 16 6 N -0.38 -7.94 12.01 -54.20 -0.65 -8.59 16 7 C 0.03 0.61 11.95 87.29 1.04 1.65 16 8 C -0.28 -5.96 6.47 -18.74 -0.12 -6.08 16 9 C 0.59 14.81 7.57 86.66 0.66 15.46 16 10 O -0.56 -17.16 14.86 -4.04 -0.06 -17.22 16 11 N -0.70 -15.86 4.35 -466.40 -2.03 -17.89 16 12 C 0.02 0.44 2.69 86.38 0.23 0.67 16 13 C -0.07 -2.36 2.77 -10.69 -0.03 -2.39 16 14 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 15 C -0.11 -3.74 5.27 30.88 0.16 -3.58 16 16 C 0.14 5.36 4.32 45.43 0.20 5.56 16 17 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 18 C -0.15 -4.89 5.72 31.59 0.18 -4.71 16 19 C -0.16 -5.81 5.72 31.58 0.18 -5.63 16 20 C 0.18 8.10 3.10 45.41 0.14 8.24 16 21 H 0.04 2.06 7.52 -2.38 -0.02 2.04 16 22 C -0.11 -4.32 5.17 30.87 0.16 -4.16 16 23 N -0.60 -28.95 2.73 -637.32 -1.74 -30.69 16 24 C -0.25 -13.46 10.29 84.03 0.86 -12.60 16 25 H 0.06 3.21 7.83 -2.91 -0.02 3.18 16 26 C -0.04 -2.10 5.43 84.86 0.46 -1.64 16 27 N -0.92 -52.03 10.34 21.65 0.22 -51.80 16 28 Si 0.96 44.42 29.56 68.60 2.03 46.45 16 29 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 30 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 31 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 32 H 0.07 0.79 8.14 -2.38 -0.02 0.77 16 33 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.11 2.34 5.89 -2.39 -0.01 2.33 16 36 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 37 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 38 H 0.07 0.77 8.14 -2.38 -0.02 0.75 16 39 H 0.23 2.39 7.88 -2.91 -0.02 2.37 16 40 H 0.41 7.18 6.65 -92.71 -0.62 6.57 16 41 H 0.19 5.55 1.12 -109.45 -0.12 5.43 16 42 H 0.05 1.49 8.01 -2.39 -0.02 1.47 16 43 H 0.04 1.44 8.14 -2.38 -0.02 1.42 16 44 H 0.08 1.95 6.69 -2.39 -0.02 1.93 16 45 H 0.05 1.76 8.14 -2.38 -0.02 1.74 16 46 H 0.12 3.30 3.92 -2.39 -0.01 3.29 16 47 H 0.11 3.48 4.85 -2.38 -0.01 3.47 16 48 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 49 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 50 H 0.06 2.79 6.80 -2.39 -0.02 2.78 16 51 H 0.25 13.79 8.31 -92.70 -0.77 13.02 16 Total: -1.00 -65.45 383.60 4.41 -61.03 By element: Atomic # 1 Polarization: 26.57 SS G_CDS: 0.23 Total: 26.80 kcal Atomic # 6 Polarization: -16.29 SS G_CDS: 5.57 Total: -10.72 kcal Atomic # 7 Polarization: -104.78 SS G_CDS: -4.20 Total: -108.98 kcal Atomic # 8 Polarization: -15.37 SS G_CDS: 0.79 Total: -14.58 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.45 kcal Total: -65.45 4.41 -61.03 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048579126.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 176.721 kcal (2) G-P(sol) polarization free energy of solvation -65.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.033 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds