Wall clock time and date at job start Wed Apr 1 2020 04:27:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50698 * 109.47381 * 2 1 4 4 N 1.30617 * 125.42044 * 89.97863 * 3 2 1 5 5 C 1.33688 * 108.99506 * 179.74897 * 4 3 2 6 6 C 1.50709 * 126.27503 * 180.26936 * 5 4 3 7 7 C 1.36346 * 107.45462 * 0.43475 * 5 4 3 8 8 C 1.46714 * 126.64426 * 179.83564 * 7 5 4 9 9 O 1.21690 * 120.00595 * 359.71472 * 8 7 5 10 10 N 1.34778 * 119.99792 * 179.70882 * 8 7 5 11 11 C 1.46503 * 119.99962 * 179.97438 * 10 8 7 12 12 C 1.53004 * 109.47025 * 180.02562 * 11 10 8 13 13 H 1.09001 * 109.40175 * 59.85821 * 12 11 10 14 14 C 1.53144 * 109.43554 * 179.74611 * 12 11 10 15 15 C 1.53709 * 108.87579 * 66.17263 * 14 12 11 16 16 H 1.08997 * 112.10150 * 187.61844 * 15 14 12 17 17 C 1.54609 * 107.83171 * 312.23399 * 15 14 12 18 18 C 1.54312 * 104.75352 * 88.66966 * 17 15 14 19 19 C 1.54616 * 104.74910 * 359.97438 * 18 17 15 20 20 H 1.08996 * 112.19043 * 146.80345 * 19 18 17 21 21 C 1.53706 * 108.37102 * 271.10976 * 19 18 17 22 22 N 1.48293 * 107.27065 * 64.01253 * 15 14 12 23 23 C 1.36939 * 128.21104 * 107.44058 * 22 15 14 24 24 H 1.08004 * 120.00150 * 145.07727 * 23 22 15 25 25 C 1.38808 * 119.99732 * 325.07764 * 23 22 15 26 26 N 1.31623 * 120.00033 * 4.99321 * 25 23 22 27 27 Si 1.86800 * 119.99855 * 184.99925 * 25 23 22 28 28 H 1.48497 * 109.47494 * 359.97438 * 27 25 23 29 29 H 1.48500 * 109.47221 * 120.00019 * 27 25 23 30 30 H 1.48506 * 109.47117 * 239.99473 * 27 25 23 31 31 O 1.33662 * 125.42613 * 270.00677 * 3 2 1 32 32 H 1.08997 * 109.47324 * 180.02562 * 1 2 3 33 33 H 1.09009 * 109.46350 * 299.99613 * 1 2 3 34 34 H 1.08993 * 109.47057 * 59.99426 * 1 2 3 35 35 H 1.09010 * 109.46870 * 240.00435 * 2 1 3 36 36 H 1.09006 * 109.47391 * 120.00630 * 2 1 3 37 37 H 1.09000 * 109.46965 * 270.19267 * 6 5 4 38 38 H 1.08992 * 109.47032 * 30.19100 * 6 5 4 39 39 H 1.09000 * 109.46877 * 150.19402 * 6 5 4 40 40 H 0.97000 * 120.00037 * 0.02562 * 10 8 7 41 41 H 1.08996 * 109.46996 * 60.00343 * 11 10 8 42 42 H 1.08994 * 109.47340 * 300.00010 * 11 10 8 43 43 H 1.09004 * 109.56927 * 306.35775 * 14 12 11 44 44 H 1.08998 * 109.57012 * 185.99214 * 14 12 11 45 45 H 1.09002 * 110.37959 * 207.48451 * 17 15 14 46 46 H 1.08999 * 110.38677 * 329.85204 * 17 15 14 47 47 H 1.08996 * 110.38382 * 241.18038 * 18 17 15 48 48 H 1.08996 * 110.38724 * 118.81352 * 18 17 15 49 49 H 1.09001 * 109.56698 * 167.83928 * 21 19 18 50 50 H 1.08993 * 109.57378 * 288.08905 * 21 19 18 51 51 H 0.97004 * 119.99758 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2844 2.1346 1.0644 5 6 2.7172 3.3417 0.6864 6 6 3.1238 4.4695 1.5997 7 6 2.7199 3.3667 -0.6768 8 6 3.1173 4.4913 -1.5312 9 8 3.4869 5.5363 -1.0288 10 7 3.0731 4.3671 -2.8725 11 6 3.4693 5.4902 -3.7256 12 6 3.3268 5.0893 -5.1953 13 1 2.2897 4.8230 -5.3990 14 6 3.7352 6.2660 -6.0864 15 6 5.2374 6.5328 -5.9003 16 1 5.5584 7.4424 -6.4079 17 6 5.5285 6.5625 -4.3821 18 6 5.8325 5.0957 -4.0115 19 6 5.6958 4.3175 -5.3406 20 1 6.3870 3.4767 -5.3982 21 6 4.2321 3.8743 -5.4942 22 7 5.9612 5.3338 -6.3877 23 6 6.6997 5.1974 -7.5328 24 1 7.5802 4.5720 -7.5363 25 6 6.3166 5.8631 -8.6890 26 7 5.3023 6.7016 -8.6603 27 14 7.2403 5.5689 -10.2857 28 1 8.3314 4.5888 -10.0531 29 1 6.3045 5.0352 -11.3079 30 1 7.8197 6.8493 -10.7656 31 8 2.2906 2.1513 -1.0892 32 1 -0.3634 -1.0276 0.0005 33 1 -0.3632 0.5138 0.8901 34 1 -0.3633 0.5139 -0.8899 35 1 1.8933 -0.5138 -0.8901 36 1 1.8934 -0.5139 0.8900 37 1 2.2539 5.0867 1.8242 38 1 3.5273 4.0597 2.5256 39 1 3.8842 5.0776 1.1097 40 1 2.7782 3.5343 -3.2729 41 1 4.5065 5.7546 -3.5197 42 1 2.8281 6.3471 -3.5193 43 1 3.1689 7.1530 -5.8021 44 1 3.5343 6.0211 -7.1293 45 1 6.3924 7.1935 -4.1735 46 1 4.6558 6.9191 -3.8351 47 1 5.1093 4.7307 -3.2823 48 1 6.8459 5.0050 -3.6207 49 1 4.0634 3.5173 -6.5102 50 1 4.0164 3.0747 -4.7856 51 1 5.0344 7.1665 -9.4684 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001048580592.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:27:55 Heat of formation + Delta-G solvation = 93.093835 kcal Electronic energy + Delta-G solvation = -32158.835422 eV Core-core repulsion = 28064.025494 eV Total energy + Delta-G solvation = -4094.809928 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -43.63518 -41.22325 -38.94070 -35.66986 -34.75057 -34.50761 -32.83141 -31.46097 -31.01206 -30.62685 -29.77503 -28.12914 -26.51227 -25.08944 -23.62120 -23.24681 -21.95556 -21.72552 -20.69434 -20.63285 -19.39647 -18.93273 -18.08889 -17.20598 -17.00705 -16.29233 -15.96884 -15.51544 -15.03861 -14.77050 -14.52480 -14.38471 -14.08096 -13.59910 -13.39820 -13.29438 -13.01198 -12.99963 -12.71686 -12.65241 -12.45333 -12.13051 -12.01682 -11.70654 -11.66508 -11.52499 -11.40987 -11.25661 -11.17083 -11.02594 -10.91532 -10.77226 -10.54453 -10.20699 -10.10749 -9.84574 -9.73937 -9.46896 -9.38878 -9.22381 -8.99712 -8.51815 -8.20059 -6.56578 -5.88406 -3.32041 0.66883 2.19064 2.21060 3.07157 3.21374 3.33340 3.41634 3.42863 3.62912 4.42439 4.47063 4.52546 4.66105 4.72480 4.90988 5.20560 5.25088 5.26882 5.29532 5.32476 5.41290 5.47872 5.48448 5.53460 5.60524 5.66482 5.71914 5.75157 5.79722 5.80814 5.89121 6.05406 6.10113 6.13482 6.16724 6.28683 6.37511 6.39793 6.53917 6.63501 6.65512 6.72412 6.87094 6.96360 7.07937 7.13499 7.30491 7.52273 7.54523 7.66334 7.78295 8.10281 8.29263 9.09631 9.68640 10.60088 11.26036 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.019514 B = 0.002613 C = 0.002455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1434.516633 B =10713.809004 C =11404.875136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.030 4.030 3 C 0.217 3.783 4 N -0.487 5.487 5 C 0.076 3.924 6 C -0.080 4.080 7 C -0.114 4.114 8 C 0.600 3.400 9 O -0.518 6.518 10 N -0.705 5.705 11 C 0.001 3.999 12 C -0.086 4.086 13 H 0.050 0.950 14 C -0.110 4.110 15 C 0.185 3.815 16 H 0.089 0.911 17 C -0.172 4.172 18 C -0.162 4.162 19 C 0.149 3.851 20 H 0.063 0.937 21 C -0.121 4.121 22 N -0.580 5.580 23 C -0.236 4.236 24 H 0.066 0.934 25 C 0.014 3.986 26 N -0.897 5.897 27 Si 0.902 3.098 28 H -0.278 1.278 29 H -0.289 1.289 30 H -0.290 1.290 31 O -0.187 6.187 32 H 0.075 0.925 33 H 0.064 0.936 34 H 0.061 0.939 35 H 0.097 0.903 36 H 0.109 0.891 37 H 0.080 0.920 38 H 0.075 0.925 39 H 0.097 0.903 40 H 0.398 0.602 41 H 0.198 0.802 42 H 0.054 0.946 43 H 0.038 0.962 44 H 0.091 0.909 45 H 0.055 0.945 46 H 0.088 0.912 47 H 0.091 0.909 48 H 0.052 0.948 49 H 0.066 0.934 50 H 0.038 0.962 51 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.876 -9.939 16.502 21.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.068 4.068 3 C 0.011 3.989 4 N -0.218 5.218 5 C -0.048 4.048 6 C -0.137 4.137 7 C -0.169 4.169 8 C 0.385 3.615 9 O -0.396 6.396 10 N -0.355 5.355 11 C -0.116 4.116 12 C -0.105 4.105 13 H 0.069 0.931 14 C -0.150 4.150 15 C 0.078 3.922 16 H 0.107 0.893 17 C -0.211 4.211 18 C -0.200 4.200 19 C 0.041 3.959 20 H 0.081 0.919 21 C -0.161 4.161 22 N -0.302 5.302 23 C -0.365 4.365 24 H 0.084 0.916 25 C -0.186 4.186 26 N -0.540 5.540 27 Si 0.731 3.269 28 H -0.203 1.203 29 H -0.215 1.215 30 H -0.217 1.217 31 O -0.074 6.074 32 H 0.094 0.906 33 H 0.083 0.917 34 H 0.080 0.920 35 H 0.116 0.884 36 H 0.127 0.873 37 H 0.099 0.901 38 H 0.094 0.906 39 H 0.116 0.884 40 H 0.233 0.767 41 H 0.213 0.787 42 H 0.073 0.927 43 H 0.056 0.944 44 H 0.110 0.890 45 H 0.074 0.926 46 H 0.106 0.894 47 H 0.109 0.891 48 H 0.070 0.930 49 H 0.084 0.916 50 H 0.056 0.944 51 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -8.671 -9.322 17.078 21.301 hybrid contribution -0.031 -0.450 -1.909 1.961 sum -8.702 -9.771 15.169 20.032 Atomic orbital electron populations 1.21792 0.92745 1.03224 1.03141 1.20182 0.97094 0.83889 1.05632 1.26542 0.97009 0.96626 0.78710 1.70319 1.17740 1.03755 1.29936 1.22063 0.97472 0.93950 0.91353 1.20385 1.02839 0.93103 0.97367 1.23122 1.12186 0.86196 0.95353 1.16313 0.78803 0.84459 0.81910 1.90849 1.48332 1.26583 1.73884 1.46341 1.65683 1.18376 1.05120 1.25416 1.09270 0.86865 0.90097 1.21504 0.98215 0.98027 0.92764 0.93147 1.22089 0.98317 0.94048 1.00523 1.21273 0.90174 0.92802 0.87962 0.89297 1.23505 1.00906 0.95618 1.01040 1.23386 1.00710 0.96427 0.99493 1.21555 0.92976 0.92521 0.88827 0.91907 1.22374 0.97879 0.95269 1.00567 1.44966 1.58314 1.05545 1.21348 1.18853 1.03790 1.28451 0.85356 0.91593 1.25313 0.96569 0.99328 0.97376 1.69898 1.28124 1.28531 1.27400 0.86234 0.78982 0.77691 0.83967 1.20290 1.21548 1.21711 1.84445 1.63524 1.22129 1.37297 0.90616 0.91681 0.91962 0.88417 0.87298 0.90130 0.90600 0.88442 0.76701 0.78665 0.92737 0.94350 0.89042 0.92610 0.89419 0.89142 0.92953 0.91559 0.94374 0.93601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.82 9.89 37.16 0.37 -0.45 16 2 C -0.03 -0.19 6.56 -27.88 -0.18 -0.37 16 3 C 0.22 2.36 7.57 -12.80 -0.10 2.26 16 4 N -0.49 -6.18 11.26 -7.07 -0.08 -6.26 16 5 C 0.08 1.01 7.16 -82.46 -0.59 0.42 16 6 C -0.08 -0.90 9.87 36.01 0.36 -0.54 16 7 C -0.11 -1.57 7.18 -36.84 -0.26 -1.84 16 8 C 0.60 9.03 7.55 -12.84 -0.10 8.93 16 9 O -0.52 -8.78 14.80 5.20 0.08 -8.70 16 10 N -0.71 -10.04 4.39 -61.61 -0.27 -10.31 16 11 C 0.00 0.02 2.68 -4.04 -0.01 0.01 16 12 C -0.09 -1.48 2.77 -89.79 -0.25 -1.73 16 13 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 14 C -0.11 -2.24 5.18 -26.29 -0.14 -2.38 16 15 C 0.18 4.07 3.12 -65.73 -0.20 3.87 16 16 H 0.09 2.24 7.28 -51.93 -0.38 1.86 16 17 C -0.17 -3.20 5.72 -25.20 -0.14 -3.34 16 18 C -0.16 -2.88 5.72 -25.20 -0.14 -3.03 16 19 C 0.15 2.97 4.28 -65.71 -0.28 2.69 16 20 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 21 C -0.12 -2.17 5.39 -25.61 -0.14 -2.31 16 22 N -0.58 -13.83 2.75 -152.73 -0.42 -14.25 16 23 C -0.24 -6.26 10.29 -15.06 -0.15 -6.42 16 24 H 0.07 1.75 7.83 -52.48 -0.41 1.34 16 25 C 0.01 0.37 5.48 -17.43 -0.10 0.27 16 26 N -0.90 -24.46 10.28 55.49 0.57 -23.89 16 27 Si 0.90 21.09 29.56 -169.99 -5.02 16.06 16 28 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 29 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 30 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 31 O -0.19 -2.32 10.57 4.43 0.05 -2.28 16 32 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 33 H 0.06 0.41 8.14 -51.92 -0.42 -0.02 16 34 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 35 H 0.10 0.46 8.14 -51.92 -0.42 0.04 16 36 H 0.11 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 38 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.10 1.18 6.47 -51.93 -0.34 0.85 16 40 H 0.40 5.13 7.14 -40.82 -0.29 4.84 16 41 H 0.20 3.29 1.12 -165.81 -0.19 3.10 16 42 H 0.05 0.89 8.00 -51.93 -0.42 0.47 16 43 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.09 2.18 7.01 -51.93 -0.36 1.82 16 45 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 46 H 0.09 1.51 4.84 -51.93 -0.25 1.26 16 47 H 0.09 1.50 3.95 -51.93 -0.21 1.30 16 48 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 49 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 50 H 0.04 0.58 6.77 -51.93 -0.35 0.23 16 51 H 0.25 6.77 8.31 -40.82 -0.34 6.43 16 LS Contribution 385.91 15.07 5.82 5.82 Total: -1.00 -29.78 385.91 -9.17 -38.95 By element: Atomic # 1 Polarization: 16.62 SS G_CDS: -7.82 Total: 8.80 kcal Atomic # 6 Polarization: -1.89 SS G_CDS: -2.07 Total: -3.95 kcal Atomic # 7 Polarization: -54.50 SS G_CDS: -0.20 Total: -54.70 kcal Atomic # 8 Polarization: -11.10 SS G_CDS: 0.12 Total: -10.97 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -29.78 -9.17 -38.95 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048580592.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.048 kcal (2) G-P(sol) polarization free energy of solvation -29.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.954 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds