Wall clock time and date at job start Wed Apr 1 2020 04:27:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50698 * 109.47381 * 2 1 4 4 N 1.30617 * 125.42044 * 89.97863 * 3 2 1 5 5 C 1.33688 * 108.99506 * 179.74897 * 4 3 2 6 6 C 1.50709 * 126.27503 * 180.26936 * 5 4 3 7 7 C 1.36346 * 107.45462 * 0.43475 * 5 4 3 8 8 C 1.46714 * 126.64426 * 179.83564 * 7 5 4 9 9 O 1.21690 * 120.00595 * 359.71472 * 8 7 5 10 10 N 1.34778 * 119.99792 * 179.70882 * 8 7 5 11 11 C 1.46503 * 119.99962 * 179.97438 * 10 8 7 12 12 C 1.53004 * 109.47025 * 180.02562 * 11 10 8 13 13 H 1.09001 * 109.40175 * 59.85821 * 12 11 10 14 14 C 1.53144 * 109.43554 * 179.74611 * 12 11 10 15 15 C 1.53709 * 108.87579 * 66.17263 * 14 12 11 16 16 H 1.08997 * 112.10150 * 187.61844 * 15 14 12 17 17 C 1.54609 * 107.83171 * 312.23399 * 15 14 12 18 18 C 1.54312 * 104.75352 * 88.66966 * 17 15 14 19 19 C 1.54616 * 104.74910 * 359.97438 * 18 17 15 20 20 H 1.08996 * 112.19043 * 146.80345 * 19 18 17 21 21 C 1.53706 * 108.37102 * 271.10976 * 19 18 17 22 22 N 1.48293 * 107.27065 * 64.01253 * 15 14 12 23 23 C 1.36939 * 128.21104 * 107.44058 * 22 15 14 24 24 H 1.08004 * 120.00150 * 145.07727 * 23 22 15 25 25 C 1.38808 * 119.99732 * 325.07764 * 23 22 15 26 26 N 1.31623 * 120.00033 * 4.99321 * 25 23 22 27 27 Si 1.86800 * 119.99855 * 184.99925 * 25 23 22 28 28 H 1.48497 * 109.47494 * 359.97438 * 27 25 23 29 29 H 1.48500 * 109.47221 * 120.00019 * 27 25 23 30 30 H 1.48506 * 109.47117 * 239.99473 * 27 25 23 31 31 O 1.33662 * 125.42613 * 270.00677 * 3 2 1 32 32 H 1.08997 * 109.47324 * 180.02562 * 1 2 3 33 33 H 1.09009 * 109.46350 * 299.99613 * 1 2 3 34 34 H 1.08993 * 109.47057 * 59.99426 * 1 2 3 35 35 H 1.09010 * 109.46870 * 240.00435 * 2 1 3 36 36 H 1.09006 * 109.47391 * 120.00630 * 2 1 3 37 37 H 1.09000 * 109.46965 * 270.19267 * 6 5 4 38 38 H 1.08992 * 109.47032 * 30.19100 * 6 5 4 39 39 H 1.09000 * 109.46877 * 150.19402 * 6 5 4 40 40 H 0.97000 * 120.00037 * 0.02562 * 10 8 7 41 41 H 1.08996 * 109.46996 * 60.00343 * 11 10 8 42 42 H 1.08994 * 109.47340 * 300.00010 * 11 10 8 43 43 H 1.09004 * 109.56927 * 306.35775 * 14 12 11 44 44 H 1.08998 * 109.57012 * 185.99214 * 14 12 11 45 45 H 1.09002 * 110.37959 * 207.48451 * 17 15 14 46 46 H 1.08999 * 110.38677 * 329.85204 * 17 15 14 47 47 H 1.08996 * 110.38382 * 241.18038 * 18 17 15 48 48 H 1.08996 * 110.38724 * 118.81352 * 18 17 15 49 49 H 1.09001 * 109.56698 * 167.83928 * 21 19 18 50 50 H 1.08993 * 109.57378 * 288.08905 * 21 19 18 51 51 H 0.97004 * 119.99758 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2844 2.1346 1.0644 5 6 2.7172 3.3417 0.6864 6 6 3.1238 4.4695 1.5997 7 6 2.7199 3.3667 -0.6768 8 6 3.1173 4.4913 -1.5312 9 8 3.4869 5.5363 -1.0288 10 7 3.0731 4.3671 -2.8725 11 6 3.4693 5.4902 -3.7256 12 6 3.3268 5.0893 -5.1953 13 1 2.2897 4.8230 -5.3990 14 6 3.7352 6.2660 -6.0864 15 6 5.2374 6.5328 -5.9003 16 1 5.5584 7.4424 -6.4079 17 6 5.5285 6.5625 -4.3821 18 6 5.8325 5.0957 -4.0115 19 6 5.6958 4.3175 -5.3406 20 1 6.3870 3.4767 -5.3982 21 6 4.2321 3.8743 -5.4942 22 7 5.9612 5.3338 -6.3877 23 6 6.6997 5.1974 -7.5328 24 1 7.5802 4.5720 -7.5363 25 6 6.3166 5.8631 -8.6890 26 7 5.3023 6.7016 -8.6603 27 14 7.2403 5.5689 -10.2857 28 1 8.3314 4.5888 -10.0531 29 1 6.3045 5.0352 -11.3079 30 1 7.8197 6.8493 -10.7656 31 8 2.2906 2.1513 -1.0892 32 1 -0.3634 -1.0276 0.0005 33 1 -0.3632 0.5138 0.8901 34 1 -0.3633 0.5139 -0.8899 35 1 1.8933 -0.5138 -0.8901 36 1 1.8934 -0.5139 0.8900 37 1 2.2539 5.0867 1.8242 38 1 3.5273 4.0597 2.5256 39 1 3.8842 5.0776 1.1097 40 1 2.7782 3.5343 -3.2729 41 1 4.5065 5.7546 -3.5197 42 1 2.8281 6.3471 -3.5193 43 1 3.1689 7.1530 -5.8021 44 1 3.5343 6.0211 -7.1293 45 1 6.3924 7.1935 -4.1735 46 1 4.6558 6.9191 -3.8351 47 1 5.1093 4.7307 -3.2823 48 1 6.8459 5.0050 -3.6207 49 1 4.0634 3.5173 -6.5102 50 1 4.0164 3.0747 -4.7856 51 1 5.0344 7.1665 -9.4684 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001048580592.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:27:54 Heat of formation + Delta-G solvation = 74.137991 kcal Electronic energy + Delta-G solvation = -32159.657409 eV Core-core repulsion = 28064.025494 eV Total energy + Delta-G solvation = -4095.631915 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -44.54720 -42.69521 -40.18923 -36.68290 -36.06724 -35.16074 -34.55835 -32.97313 -32.32619 -31.83069 -31.40492 -29.28175 -27.91075 -25.97606 -25.18734 -24.79422 -23.05531 -22.52916 -22.13955 -21.69957 -20.94984 -20.52320 -19.32436 -18.65281 -18.11389 -17.64130 -16.97771 -16.87011 -16.45768 -16.00622 -15.72514 -15.56956 -15.06696 -14.82468 -14.53579 -14.44078 -14.29783 -14.19302 -14.14084 -13.71510 -13.58240 -13.34728 -13.21945 -13.15239 -13.10656 -12.86018 -12.72154 -12.62017 -12.46708 -12.28942 -12.16113 -12.05780 -11.93969 -11.92480 -11.61949 -11.37092 -11.18987 -10.99732 -10.87655 -10.80370 -10.46985 -9.99664 -9.50498 -8.45715 -7.90114 -5.34381 -0.29593 1.28163 1.30056 1.44897 1.47533 1.56426 1.97154 2.13178 2.48962 2.82955 3.29235 3.61947 3.62276 3.64339 3.92772 3.93592 4.05194 4.14948 4.20496 4.22589 4.23928 4.29032 4.38325 4.43216 4.56179 4.58007 4.61292 4.68582 4.71917 4.77969 4.80549 4.90328 4.94334 4.96263 4.99097 5.03131 5.03790 5.09773 5.17590 5.23313 5.28620 5.34084 5.38533 5.43648 5.51399 5.55850 5.65515 5.75721 5.96324 6.29089 6.37192 6.54494 6.97391 7.12375 7.73251 8.65845 9.23087 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.019514 B = 0.002613 C = 0.002455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1434.516633 B =10713.809004 C =11404.875136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.031 4.031 3 C 0.229 3.771 4 N -0.509 5.509 5 C 0.073 3.927 6 C -0.079 4.079 7 C -0.138 4.138 8 C 0.604 3.396 9 O -0.541 6.541 10 N -0.699 5.699 11 C 0.014 3.986 12 C -0.076 4.076 13 H 0.066 0.934 14 C -0.103 4.103 15 C 0.180 3.820 16 H 0.047 0.953 17 C -0.163 4.163 18 C -0.149 4.149 19 C 0.141 3.859 20 H 0.060 0.940 21 C -0.113 4.113 22 N -0.602 5.602 23 C -0.249 4.249 24 H 0.060 0.940 25 C -0.035 4.035 26 N -0.917 5.917 27 Si 0.962 3.038 28 H -0.271 1.271 29 H -0.291 1.291 30 H -0.293 1.293 31 O -0.190 6.190 32 H 0.100 0.900 33 H 0.054 0.946 34 H 0.054 0.946 35 H 0.119 0.881 36 H 0.125 0.875 37 H 0.089 0.911 38 H 0.090 0.910 39 H 0.087 0.913 40 H 0.407 0.593 41 H 0.190 0.810 42 H 0.056 0.944 43 H 0.048 0.952 44 H 0.052 0.948 45 H 0.054 0.946 46 H 0.108 0.892 47 H 0.110 0.890 48 H 0.055 0.945 49 H 0.040 0.960 50 H 0.073 0.927 51 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.758 -12.031 18.309 23.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.069 4.069 3 C 0.024 3.976 4 N -0.239 5.239 5 C -0.051 4.051 6 C -0.135 4.135 7 C -0.193 4.193 8 C 0.390 3.610 9 O -0.421 6.421 10 N -0.349 5.349 11 C -0.104 4.104 12 C -0.095 4.095 13 H 0.084 0.916 14 C -0.143 4.143 15 C 0.073 3.927 16 H 0.065 0.935 17 C -0.201 4.201 18 C -0.187 4.187 19 C 0.035 3.965 20 H 0.079 0.921 21 C -0.152 4.152 22 N -0.325 5.325 23 C -0.379 4.379 24 H 0.078 0.922 25 C -0.232 4.232 26 N -0.561 5.561 27 Si 0.791 3.209 28 H -0.195 1.195 29 H -0.218 1.218 30 H -0.220 1.220 31 O -0.078 6.078 32 H 0.119 0.881 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.137 0.863 36 H 0.143 0.857 37 H 0.107 0.893 38 H 0.109 0.891 39 H 0.105 0.895 40 H 0.243 0.757 41 H 0.205 0.795 42 H 0.075 0.925 43 H 0.067 0.933 44 H 0.071 0.929 45 H 0.073 0.927 46 H 0.126 0.874 47 H 0.128 0.872 48 H 0.074 0.926 49 H 0.059 0.941 50 H 0.091 0.909 51 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -9.555 -11.442 18.907 24.077 hybrid contribution 0.222 0.124 -2.398 2.411 sum -9.333 -11.318 16.509 22.085 Atomic orbital electron populations 1.21788 0.91931 1.04592 1.02248 1.20545 0.97571 0.81290 1.07477 1.27599 0.94482 0.97587 0.77936 1.70377 1.19025 1.03816 1.30705 1.22432 0.96537 0.94554 0.91581 1.20417 1.02906 0.92676 0.97545 1.22823 1.14408 0.86747 0.95286 1.16374 0.78214 0.84509 0.81908 1.90837 1.49344 1.27602 1.74301 1.46138 1.65733 1.18231 1.04837 1.25034 1.08801 0.87538 0.89070 1.21352 0.98777 0.96269 0.93065 0.91569 1.21884 0.97415 0.95927 0.99053 1.21208 0.90964 0.90754 0.89740 0.93465 1.23451 1.01775 0.96439 0.98431 1.23311 1.01585 0.95296 0.98542 1.21757 0.94214 0.91998 0.88575 0.92147 1.22249 0.96481 0.96446 1.00071 1.45153 1.58430 1.07401 1.21503 1.19065 1.04106 1.27987 0.86700 0.92193 1.25942 0.97731 0.99550 0.99964 1.70058 1.29385 1.29226 1.27461 0.85290 0.77917 0.77277 0.80440 1.19513 1.21768 1.22048 1.84442 1.63764 1.21765 1.37786 0.88137 0.92722 0.92699 0.86309 0.85669 0.89293 0.89149 0.89455 0.75660 0.79521 0.92531 0.93286 0.92936 0.92746 0.87440 0.87232 0.92581 0.94094 0.90900 0.94210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.89 71.98 0.71 -0.46 16 2 C -0.03 -0.29 6.56 29.85 0.20 -0.09 16 3 C 0.23 4.42 7.57 88.29 0.67 5.09 16 4 N -0.51 -11.90 11.26 -291.06 -3.28 -15.17 16 5 C 0.07 1.83 7.16 41.84 0.30 2.13 16 6 C -0.08 -1.65 9.87 71.24 0.70 -0.95 16 7 C -0.14 -3.57 7.18 24.04 0.17 -3.40 16 8 C 0.60 16.98 7.55 86.46 0.65 17.63 16 9 O -0.54 -17.46 14.80 -4.32 -0.06 -17.53 16 10 N -0.70 -18.10 4.39 -467.04 -2.05 -20.15 16 11 C 0.01 0.42 2.68 86.38 0.23 0.66 16 12 C -0.08 -2.50 2.77 -10.26 -0.03 -2.53 16 13 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 14 C -0.10 -4.24 5.18 30.88 0.16 -4.08 16 15 C 0.18 8.11 3.12 45.43 0.14 8.26 16 16 H 0.05 2.50 7.28 -2.39 -0.02 2.48 16 17 C -0.16 -5.94 5.72 31.59 0.18 -5.76 16 18 C -0.15 -5.09 5.72 31.59 0.18 -4.91 16 19 C 0.14 5.54 4.28 45.43 0.19 5.73 16 20 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 21 C -0.11 -3.89 5.39 31.32 0.17 -3.73 16 22 N -0.60 -29.28 2.75 -637.13 -1.75 -31.03 16 23 C -0.25 -13.56 10.29 84.03 0.86 -12.70 16 24 H 0.06 3.25 7.83 -2.91 -0.02 3.23 16 25 C -0.03 -1.90 5.48 84.86 0.47 -1.43 16 26 N -0.92 -51.95 10.28 21.65 0.22 -51.72 16 27 Si 0.96 44.41 29.56 68.60 2.03 46.44 16 28 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 29 H -0.29 -13.42 7.11 99.48 0.71 -12.72 16 30 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 31 O -0.19 -4.27 10.57 -7.06 -0.07 -4.35 16 32 H 0.10 0.33 8.14 -2.39 -0.02 0.32 16 33 H 0.05 0.56 8.14 -2.38 -0.02 0.54 16 34 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 35 H 0.12 0.66 8.14 -2.38 -0.02 0.64 16 36 H 0.13 0.81 8.14 -2.38 -0.02 0.79 16 37 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 38 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 39 H 0.09 2.03 6.47 -2.39 -0.02 2.02 16 40 H 0.41 9.23 7.14 -92.71 -0.66 8.57 16 41 H 0.19 5.90 1.12 -109.36 -0.12 5.77 16 42 H 0.06 1.70 8.00 -2.39 -0.02 1.68 16 43 H 0.05 1.86 8.14 -2.38 -0.02 1.84 16 44 H 0.05 2.59 7.01 -2.39 -0.02 2.57 16 45 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 46 H 0.11 3.53 4.84 -2.39 -0.01 3.51 16 47 H 0.11 3.36 3.95 -2.39 -0.01 3.35 16 48 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 49 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 50 H 0.07 2.01 6.77 -2.39 -0.02 1.99 16 51 H 0.25 13.77 8.31 -92.71 -0.77 13.00 16 Total: -1.00 -66.31 385.91 1.18 -65.13 By element: Atomic # 1 Polarization: 28.75 SS G_CDS: 0.18 Total: 28.93 kcal Atomic # 6 Polarization: -6.51 SS G_CDS: 5.96 Total: -0.55 kcal Atomic # 7 Polarization: -111.22 SS G_CDS: -6.86 Total: -118.08 kcal Atomic # 8 Polarization: -21.73 SS G_CDS: -0.14 Total: -21.87 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.44 kcal Total: -66.31 1.18 -65.13 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048580592.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.271 kcal (2) G-P(sol) polarization free energy of solvation -66.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.133 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds