Wall clock time and date at job start Wed Apr 1 2020 05:30:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47237 * 2 1 4 4 C 1.53002 * 109.46449 * 240.00118 * 2 1 3 5 5 C 1.50697 * 109.47217 * 120.00562 * 2 1 3 6 6 N 1.29932 * 125.38044 * 59.99400 * 5 2 1 7 7 C 1.36075 * 108.47873 * 180.02562 * 6 5 2 8 8 C 1.47415 * 126.44645 * 180.02562 * 7 6 5 9 9 O 1.21615 * 119.99540 * 172.84749 * 8 7 6 10 10 N 1.34779 * 120.00530 * 352.84936 * 8 7 6 11 11 C 1.46798 * 119.57714 * 172.98022 * 10 8 7 12 12 C 1.53466 * 107.59467 * 127.97566 * 11 10 8 13 13 C 1.52732 * 108.43790 * 58.07702 * 12 11 10 14 14 C 1.53011 * 110.80340 * 296.22680 * 13 12 11 15 15 H 1.09004 * 112.09517 * 290.72125 * 14 13 12 16 16 C 1.45119 * 119.57340 * 353.00221 * 10 8 7 17 17 H 1.09001 * 110.60779 * 348.49944 * 16 10 8 18 18 C 1.54421 * 111.60435 * 111.31988 * 16 10 8 19 19 C 1.54571 * 102.44524 * 156.57713 * 18 16 10 20 20 N 1.47116 * 107.25422 * 338.33113 * 19 18 16 21 21 C 1.36948 * 125.76863 * 177.43469 * 20 19 18 22 22 H 1.07997 * 119.99724 * 179.97438 * 21 20 19 23 23 C 1.38817 * 119.99491 * 359.96324 * 21 20 19 24 24 N 1.31612 * 120.00078 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 119.99431 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.47393 * 0.02562 * 25 23 21 27 27 H 1.48500 * 109.46761 * 120.00134 * 25 23 21 28 28 H 1.48497 * 109.46874 * 239.99482 * 25 23 21 29 29 C 1.36090 * 107.09798 * 0.26172 * 7 6 5 30 30 O 1.34049 * 125.37713 * 240.03817 * 5 2 1 31 31 H 1.09008 * 109.46618 * 300.00067 * 1 2 3 32 32 H 1.08992 * 109.47555 * 59.99617 * 1 2 3 33 33 H 1.08998 * 109.47233 * 179.97438 * 1 2 3 34 34 H 1.09001 * 109.46687 * 180.02562 * 3 2 1 35 35 H 1.08995 * 109.46857 * 300.00191 * 3 2 1 36 36 H 1.09000 * 109.46995 * 60.00858 * 3 2 1 37 37 H 1.08998 * 109.47333 * 299.99853 * 4 2 1 38 38 H 1.08994 * 109.47600 * 60.00431 * 4 2 1 39 39 H 1.09010 * 109.46914 * 180.02562 * 4 2 1 40 40 H 1.09000 * 109.83249 * 8.45293 * 11 10 8 41 41 H 1.08995 * 109.83277 * 247.49863 * 11 10 8 42 42 H 1.08994 * 109.64433 * 298.39261 * 12 11 10 43 43 H 1.09002 * 109.81428 * 177.86488 * 12 11 10 44 44 H 1.09004 * 109.21294 * 175.88103 * 13 12 11 45 45 H 1.09002 * 109.20983 * 56.56905 * 13 12 11 46 46 H 1.08997 * 110.81171 * 274.81391 * 18 16 10 47 47 H 1.08998 * 110.81178 * 38.33800 * 18 16 10 48 48 H 1.08998 * 109.88128 * 218.92092 * 19 18 16 49 49 H 1.08998 * 109.88708 * 97.74253 * 19 18 16 50 50 H 0.96998 * 119.99703 * 180.02562 * 24 23 21 51 51 H 1.07999 * 126.51712 * 179.74342 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0398 -0.7213 -1.2493 5 6 2.0324 -0.7105 1.2304 6 7 1.7837 -1.9480 1.5387 7 6 2.4037 -2.2320 2.7162 8 6 2.3833 -3.5230 3.4276 9 8 3.0847 -3.6885 4.4072 10 7 1.5875 -4.5198 2.9924 11 6 1.6867 -5.8481 3.6095 12 6 0.2727 -6.2710 4.0303 13 6 -0.6212 -6.2673 2.7918 14 6 -0.7499 -4.8545 2.2187 15 1 -1.3278 -4.1988 2.8702 16 6 0.6438 -4.2664 1.9195 17 1 0.5631 -3.1971 1.7241 18 6 1.0400 -5.0112 0.6261 19 6 -0.3085 -5.1211 -0.1214 20 7 -1.3759 -4.9817 0.8813 21 6 -2.7207 -4.9719 0.6229 22 1 -3.4257 -4.8641 1.4339 23 6 -3.1776 -5.1003 -0.6817 24 7 -2.3184 -5.2310 -1.6700 25 14 -5.0120 -5.0877 -1.0341 26 1 -5.7597 -4.9287 0.2390 27 1 -5.3339 -3.9568 -1.9412 28 1 -5.4006 -6.3668 -1.6807 29 6 3.0418 -1.0984 3.1161 30 8 2.8057 -0.1654 2.1800 31 1 -0.3633 0.5139 0.8901 32 1 -0.3634 0.5138 -0.8899 33 1 -0.3633 -1.0276 -0.0005 34 1 3.1300 1.4424 -0.0005 35 1 1.6767 1.9562 -0.8899 36 1 1.6768 1.9562 0.8901 37 1 1.6765 -1.7489 -1.2493 38 1 1.6766 -0.2074 -2.1393 39 1 3.1299 -0.7217 -1.2492 40 1 2.3347 -5.8018 4.4847 41 1 2.0871 -6.5615 2.8892 42 1 -0.1168 -5.5668 4.7653 43 1 0.2991 -7.2723 4.4602 44 1 -1.6105 -6.6362 3.0625 45 1 -0.1893 -6.9231 2.0358 46 1 1.7570 -4.4285 0.0478 47 1 1.4376 -5.9999 0.8549 48 1 -0.3834 -6.0925 -0.6101 49 1 -0.3884 -4.3244 -0.8610 50 1 -2.6377 -5.3203 -2.5816 51 1 3.6285 -0.9739 4.0142 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049468817.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:30:57 Heat of formation + Delta-G solvation = 21.310382 kcal Electronic energy + Delta-G solvation = -33258.037875 eV Core-core repulsion = 29160.115182 eV Total energy + Delta-G solvation = -4097.922693 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.49591 -40.13279 -38.01216 -37.03666 -34.92432 -34.91290 -32.49323 -32.01099 -29.89590 -28.89651 -28.15920 -27.47128 -27.31035 -25.24735 -24.35810 -23.36231 -23.13598 -21.75397 -20.62713 -19.90850 -19.58033 -18.31561 -17.25804 -16.89966 -16.64478 -16.61046 -15.70218 -15.23346 -14.77997 -14.71027 -14.48170 -14.18760 -14.08522 -13.82847 -13.59383 -13.50519 -13.23544 -12.75662 -12.49299 -12.41236 -12.37174 -12.07537 -11.87085 -11.72544 -11.71487 -11.42921 -11.33823 -11.06459 -11.03994 -10.94388 -10.87839 -10.77441 -10.56896 -10.44654 -10.40615 -10.14355 -10.01828 -9.79219 -9.57745 -9.12749 -8.99356 -8.59043 -8.17847 -6.80732 -5.68287 -3.01409 1.12835 2.04896 2.52037 3.15313 3.38741 3.40072 3.46361 3.48064 3.77963 4.47492 4.59053 4.61903 4.73652 4.92107 4.93924 5.21055 5.32281 5.39472 5.41370 5.47239 5.50857 5.52690 5.58437 5.60928 5.67556 5.69151 5.71295 5.75819 5.76798 5.85293 5.88279 5.90275 6.02196 6.16236 6.18765 6.24725 6.25912 6.37833 6.39403 6.41124 6.47562 6.63474 6.67841 6.95676 7.00473 7.16499 7.49087 7.60302 7.68798 7.76067 7.87430 8.26213 8.30517 9.24372 9.83900 10.51157 11.42745 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008949 B = 0.005012 C = 0.003498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3128.009468 B = 5584.842545 C = 8001.868633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.033 3.967 3 C -0.146 4.146 4 C -0.141 4.141 5 C 0.208 3.792 6 N -0.439 5.439 7 C -0.064 4.064 8 C 0.597 3.403 9 O -0.553 6.553 10 N -0.572 5.572 11 C 0.111 3.889 12 C -0.131 4.131 13 C -0.130 4.130 14 C 0.154 3.846 15 H 0.055 0.945 16 C 0.103 3.897 17 H 0.145 0.855 18 C -0.145 4.145 19 C 0.185 3.815 20 N -0.596 5.596 21 C -0.222 4.222 22 H 0.076 0.924 23 C -0.007 4.007 24 N -0.920 5.920 25 Si 0.907 3.093 26 H -0.281 1.281 27 H -0.291 1.291 28 H -0.292 1.292 29 C 0.000 4.000 30 O -0.195 6.195 31 H 0.057 0.943 32 H 0.072 0.928 33 H 0.081 0.919 34 H 0.061 0.939 35 H 0.072 0.928 36 H 0.062 0.938 37 H 0.077 0.923 38 H 0.072 0.928 39 H 0.056 0.944 40 H 0.089 0.911 41 H 0.068 0.932 42 H 0.061 0.939 43 H 0.068 0.932 44 H 0.058 0.942 45 H 0.062 0.938 46 H 0.060 0.940 47 H 0.051 0.949 48 H 0.037 0.963 49 H 0.051 0.949 50 H 0.250 0.750 51 H 0.227 0.773 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.990 9.875 5.279 15.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.031 3.969 3 C -0.204 4.204 4 C -0.198 4.198 5 C 0.000 4.000 6 N -0.168 5.168 7 C -0.183 4.183 8 C 0.385 3.615 9 O -0.433 6.433 10 N -0.301 5.301 11 C -0.011 4.011 12 C -0.170 4.170 13 C -0.170 4.170 14 C 0.046 3.954 15 H 0.073 0.927 16 C -0.002 4.002 17 H 0.161 0.839 18 C -0.185 4.185 19 C 0.060 3.940 20 N -0.321 5.321 21 C -0.350 4.350 22 H 0.094 0.906 23 C -0.203 4.203 24 N -0.568 5.568 25 Si 0.738 3.262 26 H -0.206 1.206 27 H -0.218 1.218 28 H -0.219 1.219 29 C -0.074 4.074 30 O -0.081 6.081 31 H 0.076 0.924 32 H 0.091 0.909 33 H 0.100 0.900 34 H 0.080 0.920 35 H 0.091 0.909 36 H 0.081 0.919 37 H 0.096 0.904 38 H 0.091 0.909 39 H 0.075 0.925 40 H 0.108 0.892 41 H 0.086 0.914 42 H 0.080 0.920 43 H 0.086 0.914 44 H 0.077 0.923 45 H 0.081 0.919 46 H 0.079 0.921 47 H 0.070 0.930 48 H 0.055 0.945 49 H 0.070 0.930 50 H 0.061 0.939 51 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges 10.811 9.351 5.194 15.209 hybrid contribution -0.603 0.149 0.189 0.649 sum 10.208 9.500 5.383 14.948 Atomic orbital electron populations 1.21944 0.90947 1.04731 1.02435 1.19206 0.96922 0.94152 0.86591 1.21921 1.01587 0.93842 1.03000 1.21922 1.00970 1.02070 0.94869 1.26568 0.92061 0.88971 0.92413 1.70843 1.20774 1.12834 1.12376 1.21818 1.04097 0.96957 0.95478 1.16893 0.80037 0.81928 0.82679 1.90760 1.44219 1.81881 1.26407 1.47473 1.36709 1.09850 1.36104 1.21727 0.98103 0.82968 0.98274 1.21906 0.95093 1.00986 0.99013 1.22120 0.98937 1.00196 0.95774 1.21378 0.91453 0.93466 0.89127 0.92672 1.22775 0.87819 1.04419 0.85148 0.83891 1.23021 1.00135 0.98675 0.96638 1.21115 0.82065 1.00593 0.90217 1.44693 1.02022 1.85570 0.99776 1.19067 0.80783 1.42691 0.92470 0.90590 1.24746 0.97499 1.02410 0.95626 1.69971 1.31472 1.56559 0.98765 0.86109 0.85054 0.77190 0.77812 1.20621 1.21841 1.21885 1.25165 1.01479 0.86410 0.94352 1.84375 1.54524 1.40857 1.28368 0.92426 0.90878 0.89993 0.91999 0.90916 0.91928 0.90366 0.90861 0.92505 0.89249 0.91397 0.91979 0.91376 0.92329 0.91895 0.92082 0.93011 0.94511 0.93049 0.93917 0.75641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.70 8.45 37.16 0.31 -1.38 16 2 C 0.03 0.36 0.99 -155.66 -0.15 0.21 16 3 C -0.15 -1.23 8.01 37.16 0.30 -0.93 16 4 C -0.14 -1.53 8.45 37.16 0.31 -1.21 16 5 C 0.21 2.79 6.44 -13.08 -0.08 2.70 16 6 N -0.44 -6.91 7.81 -7.66 -0.06 -6.97 16 7 C -0.06 -0.99 6.62 -83.02 -0.55 -1.54 16 8 C 0.60 10.21 7.63 -12.52 -0.10 10.12 16 9 O -0.55 -10.07 16.23 5.26 0.09 -9.98 16 10 N -0.57 -9.76 2.73 -166.28 -0.45 -10.21 16 11 C 0.11 1.69 6.17 -3.64 -0.02 1.67 16 12 C -0.13 -1.96 6.11 -26.63 -0.16 -2.13 16 13 C -0.13 -2.40 5.10 -26.86 -0.14 -2.53 16 14 C 0.15 3.18 3.60 -66.35 -0.24 2.94 16 15 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 16 C 0.10 1.91 2.61 -67.30 -0.18 1.74 16 17 H 0.14 2.80 4.29 -57.51 -0.25 2.55 16 18 C -0.15 -2.83 6.08 -25.16 -0.15 -2.98 16 19 C 0.19 4.40 5.19 -2.88 -0.01 4.38 16 20 N -0.60 -14.62 2.91 -162.20 -0.47 -15.10 16 21 C -0.22 -5.98 10.29 -15.05 -0.15 -6.14 16 22 H 0.08 2.01 7.83 -52.49 -0.41 1.60 16 23 C -0.01 -0.18 5.49 -17.43 -0.10 -0.28 16 24 N -0.92 -26.26 10.33 55.49 0.57 -25.69 16 25 Si 0.91 21.75 29.55 -169.99 -5.02 16.72 16 26 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 27 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 28 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 29 C 0.00 0.00 11.95 29.96 0.36 0.36 16 30 O -0.20 -2.41 10.11 6.52 0.07 -2.34 16 31 H 0.06 0.65 8.14 -51.92 -0.42 0.23 16 32 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 34 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 39 H 0.06 0.57 8.14 -51.92 -0.42 0.15 16 40 H 0.09 1.32 6.93 -51.93 -0.36 0.96 16 41 H 0.07 1.00 7.53 -51.93 -0.39 0.61 16 42 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 43 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 44 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 45 H 0.06 1.24 7.12 -51.93 -0.37 0.87 16 46 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 47 H 0.05 0.98 6.80 -51.93 -0.35 0.62 16 48 H 0.04 0.97 7.60 -51.93 -0.39 0.58 16 49 H 0.05 1.34 7.30 -51.93 -0.38 0.97 16 50 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 51 H 0.23 2.05 8.06 -52.49 -0.42 1.63 16 LS Contribution 395.93 15.07 5.97 5.97 Total: -1.00 -30.84 395.93 -8.45 -39.29 By element: Atomic # 1 Polarization: 11.71 SS G_CDS: -8.38 Total: 3.33 kcal Atomic # 6 Polarization: 5.74 SS G_CDS: -0.75 Total: 4.98 kcal Atomic # 7 Polarization: -57.55 SS G_CDS: -0.41 Total: -57.96 kcal Atomic # 8 Polarization: -12.48 SS G_CDS: 0.15 Total: -12.33 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -30.84 -8.45 -39.29 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049468817.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.604 kcal (2) G-P(sol) polarization free energy of solvation -30.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.294 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds