Wall clock time and date at job start Wed Apr 1 2020 05:06:07
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53007 * 1
3 3 C 1.52995 * 109.46912 * 2 1
4 4 C 1.50706 * 109.47153 * 175.01036 * 3 2 1
5 5 O 1.33497 * 126.82522 * 274.98103 * 4 3 2
6 6 N 1.20651 * 113.15293 * 180.02562 * 5 4 3
7 7 C 1.30012 * 112.30842 * 359.71724 * 6 5 4
8 8 C 1.50700 * 127.34113 * 180.30279 * 7 6 5
9 9 C 1.37358 * 126.83193 * 94.99591 * 4 3 2
10 10 C 1.47398 * 128.56293 * 359.97222 * 9 4 3
11 11 O 1.21614 * 119.99597 * 274.97533 * 10 9 4
12 12 N 1.34777 * 120.00295 * 94.98082 * 10 9 4
13 13 C 1.47849 * 122.22600 * 354.56780 * 12 10 9
14 14 C 1.52719 * 111.05738 * 127.53486 * 13 12 10
15 15 C 1.53974 * 111.09233 * 48.84632 * 14 13 12
16 16 C 1.51086 * 107.28982 * 302.24137 * 15 14 13
17 17 H 1.08995 * 108.73345 * 309.56701 * 16 15 14
18 18 C 1.45726 * 122.22179 * 174.58803 * 12 10 9
19 19 H 1.09008 * 111.63710 * 119.12847 * 18 12 10
20 20 C 1.53425 * 116.37729 * 350.08100 * 18 12 10
21 21 C 1.55468 * 101.67412 * 207.26549 * 20 18 12
22 22 N 1.45025 * 119.19154 * 184.30213 * 16 15 14
23 23 C 1.36935 * 126.56394 * 29.34140 * 22 16 15
24 24 H 1.08000 * 120.00056 * 0.02562 * 23 22 16
25 25 C 1.38808 * 120.00269 * 179.97438 * 23 22 16
26 26 N 1.31625 * 120.00037 * 0.02562 * 25 23 22
27 27 Si 1.86802 * 120.00282 * 180.02562 * 25 23 22
28 28 H 1.48494 * 109.46747 * 60.00409 * 27 25 23
29 29 H 1.48499 * 109.46979 * 180.02562 * 27 25 23
30 30 H 1.48498 * 109.47322 * 300.00328 * 27 25 23
31 31 H 1.09000 * 109.46782 * 180.02562 * 1 2 3
32 32 H 1.09003 * 109.46693 * 300.00092 * 1 2 3
33 33 H 1.08999 * 109.47050 * 59.99847 * 1 2 3
34 34 H 1.09003 * 109.46693 * 239.99908 * 2 1 3
35 35 H 1.08999 * 109.47050 * 120.00153 * 2 1 3
36 36 H 1.08996 * 109.47924 * 55.00680 * 3 2 1
37 37 H 1.09001 * 109.47044 * 295.00426 * 3 2 1
38 38 H 1.08999 * 109.46827 * 270.14199 * 8 7 6
39 39 H 1.08997 * 109.46602 * 30.14103 * 8 7 6
40 40 H 1.09001 * 109.47422 * 150.14127 * 8 7 6
41 41 H 1.09001 * 109.15815 * 247.93760 * 13 12 10
42 42 H 1.08998 * 109.16410 * 7.18020 * 13 12 10
43 43 H 1.08996 * 109.06941 * 169.05440 * 14 13 12
44 44 H 1.08992 * 109.07116 * 288.08237 * 14 13 12
45 45 H 1.08994 * 109.03901 * 183.27731 * 15 14 13
46 46 H 1.08999 * 110.76559 * 62.17657 * 15 14 13
47 47 H 1.09007 * 110.98882 * 89.17311 * 20 18 12
48 48 H 1.08997 * 111.02160 * 325.38437 * 20 18 12
49 49 H 1.08997 * 109.96508 * 263.22594 * 21 20 18
50 50 H 1.08998 * 109.96381 * 141.97876 * 21 20 18
51 51 H 0.97000 * 120.00280 * 179.97438 * 26 25 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 3.5420 1.4443 0.1236
5 8 4.2520 1.3834 1.2524
6 7 5.4437 1.4019 1.0648
7 6 5.7435 1.4711 -0.1984
8 6 7.1200 1.5070 -0.8106
9 6 4.4526 1.5093 -0.9028
10 6 4.1988 1.5912 -2.3524
11 8 4.0108 0.5761 -2.9951
12 7 4.1752 2.7912 -2.9657
13 6 4.2801 4.0616 -2.2167
14 6 5.3871 4.9453 -2.7876
15 6 5.2687 5.0625 -4.3183
16 6 5.3286 3.6619 -4.8818
17 1 6.1951 3.1520 -4.4610
18 6 4.0442 2.9226 -4.4111
19 1 3.1448 3.4745 -4.6846
20 6 4.1699 1.6295 -5.2273
21 6 4.6930 2.1668 -6.5892
22 7 5.3339 3.4778 -6.3203
23 6 5.8337 4.3478 -7.2522
24 1 6.2801 5.2792 -6.9366
25 6 5.7675 4.0322 -8.6023
26 7 5.2239 2.8968 -8.9868
27 14 6.4500 5.2187 -9.8735
28 1 7.8987 5.4305 -9.6252
29 1 6.2579 4.6522 -11.2327
30 1 5.7356 6.5166 -9.7731
31 1 -0.3633 -1.0277 0.0005
32 1 -0.3633 0.5139 0.8900
33 1 -0.3633 0.5139 -0.8900
34 1 1.8933 -0.5139 -0.8900
35 1 1.8934 -0.5139 0.8900
36 1 1.6055 1.9816 0.8418
37 1 1.7515 1.9298 -0.9314
38 1 7.4509 2.5417 -0.9001
39 1 7.8145 0.9571 -0.1754
40 1 7.0903 1.0482 -1.7989
41 1 3.3304 4.5929 -2.2789
42 1 4.5004 3.8437 -1.1717
43 1 5.3111 5.9398 -2.3480
44 1 6.3548 4.5151 -2.5297
45 1 6.1056 5.6500 -4.6957
46 1 4.3270 5.5347 -4.5980
47 1 3.1999 1.1463 -5.3449
48 1 4.8902 0.9490 -4.7733
49 1 3.8620 2.2942 -7.2829
50 1 5.4238 1.4741 -7.0065
51 1 5.1773 2.6764 -9.9303
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001049469522.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:06:07
Heat of formation + Delta-G solvation = 31.780556 kcal
Electronic energy + Delta-G solvation = -32622.868866 eV
Core-core repulsion = 28525.400194 eV
Total energy + Delta-G solvation = -4097.468672 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 1.07 seconds
Orbital eigenvalues (eV)
-45.96343 -41.70337 -39.31323 -36.98745 -36.59182 -35.62531 -34.26135 -33.88129
-32.78673 -30.87123 -29.81091 -29.72835 -28.18616 -26.70597 -26.28649 -24.70448
-22.89949 -22.84292 -22.55518 -21.59724 -21.01863 -20.31245 -18.90401 -18.63643
-18.18715 -17.28463 -17.19372 -16.77240 -16.49025 -16.08264 -15.85809 -15.57437
-15.40723 -15.04211 -14.96319 -14.47611 -14.37023 -14.28023 -14.20880 -13.94787
-13.88635 -13.74451 -13.44697 -13.27647 -13.17199 -12.90520 -12.68077 -12.54218
-12.30586 -12.24766 -12.21137 -12.15082 -12.00988 -11.82747 -11.72462 -11.61577
-11.59980 -11.47537 -10.99376 -10.80487 -10.66010 -10.37698 -9.65072 -8.90788
-7.82998 -5.19855 0.24262 0.80299 1.28577 1.47107 1.50330 1.56449
1.67417 2.05739 2.51461 2.98047 3.18402 3.33826 3.35780 3.53815
3.77926 3.91139 3.96069 3.99099 4.01747 4.04922 4.10628 4.15954
4.22327 4.30224 4.41431 4.52204 4.54437 4.55820 4.60439 4.61949
4.66287 4.71750 4.74263 4.78203 4.88813 4.89611 4.98716 5.04847
5.08310 5.12239 5.20033 5.26080 5.27533 5.39607 5.42327 5.49300
5.57651 5.59929 5.72073 6.18487 6.34157 7.00860 7.06390 7.15691
7.76577 8.46056 9.28508
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.016285 B = 0.003115 C = 0.002888
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1718.921978 B = 8985.754487 C = 9691.655874
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.147 4.147
2 C -0.121 4.121
3 C -0.041 4.041
4 C 0.036 3.964
5 O 0.099 5.901
6 N -0.369 5.369
7 C 0.051 3.949
8 C -0.079 4.079
9 C -0.260 4.260
10 C 0.603 3.397
11 O -0.557 6.557
12 N -0.584 5.584
13 C 0.109 3.891
14 C -0.119 4.119
15 C -0.110 4.110
16 C 0.154 3.846
17 H 0.002 0.998
18 C 0.132 3.868
19 H 0.089 0.911
20 C -0.111 4.111
21 C 0.183 3.817
22 N -0.611 5.611
23 C -0.233 4.233
24 H 0.090 0.910
25 C -0.068 4.068
26 N -0.954 5.954
27 Si 0.978 3.022
28 H -0.279 1.279
29 H -0.298 1.298
30 H -0.272 1.272
31 H 0.060 0.940
32 H 0.076 0.924
33 H 0.055 0.945
34 H 0.045 0.955
35 H 0.072 0.928
36 H 0.128 0.872
37 H 0.097 0.903
38 H 0.101 0.899
39 H 0.094 0.906
40 H 0.069 0.931
41 H 0.094 0.906
42 H 0.092 0.908
43 H 0.110 0.890
44 H 0.063 0.937
45 H 0.057 0.943
46 H 0.069 0.931
47 H 0.067 0.933
48 H 0.064 0.936
49 H 0.028 0.972
50 H -0.001 1.001
51 H 0.246 0.754
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.690 1.825 23.539 24.539
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.204 4.204
2 C -0.159 4.159
3 C -0.078 4.078
4 C -0.028 4.028
5 O 0.039 5.961
6 N -0.076 5.076
7 C -0.111 4.111
8 C -0.136 4.136
9 C -0.268 4.268
10 C 0.390 3.610
11 O -0.436 6.436
12 N -0.315 5.315
13 C -0.012 4.012
14 C -0.157 4.157
15 C -0.149 4.149
16 C 0.046 3.954
17 H 0.019 0.981
18 C 0.027 3.973
19 H 0.107 0.893
20 C -0.150 4.150
21 C 0.058 3.942
22 N -0.335 5.335
23 C -0.362 4.362
24 H 0.107 0.893
25 C -0.261 4.261
26 N -0.603 5.603
27 Si 0.806 3.194
28 H -0.205 1.205
29 H -0.225 1.225
30 H -0.198 1.198
31 H 0.079 0.921
32 H 0.094 0.906
33 H 0.074 0.926
34 H 0.064 0.936
35 H 0.091 0.909
36 H 0.146 0.854
37 H 0.115 0.885
38 H 0.120 0.880
39 H 0.113 0.887
40 H 0.088 0.912
41 H 0.112 0.888
42 H 0.110 0.890
43 H 0.129 0.871
44 H 0.082 0.918
45 H 0.075 0.925
46 H 0.088 0.912
47 H 0.086 0.914
48 H 0.083 0.917
49 H 0.046 0.954
50 H 0.018 0.982
51 H 0.055 0.945
Dipole moment (debyes) X Y Z Total
from point charges -6.047 1.251 24.116 24.894
hybrid contribution 0.472 -0.036 -2.297 2.345
sum -5.575 1.215 21.819 22.553
Atomic orbital electron populations
1.21734 0.93197 1.02638 1.02877 1.21509 0.97745 0.94372 1.02265
1.20541 0.81269 0.99912 1.06127 1.25033 0.97219 0.96901 0.83601
1.84505 1.12051 1.67676 1.31897 1.73600 0.94322 1.21070 1.18656
1.25001 0.97387 1.00492 0.88193 1.20294 0.88021 1.04932 1.00366
1.21788 0.93777 1.16698 0.94491 1.17071 0.76231 0.82784 0.84938
1.90821 1.50504 1.36136 1.66108 1.47940 1.70601 1.06298 1.06668
1.21979 1.00849 0.82735 0.95627 1.21895 0.98699 1.01346 0.93770
1.21433 1.02250 0.95578 0.95638 1.20926 0.94049 0.96314 0.84123
0.98087 1.22087 0.98964 0.97445 0.78756 0.89301 1.22650 1.01241
0.96067 0.95001 1.21437 0.94667 0.85577 0.92524 1.44315 1.69296
1.18815 1.01100 1.19364 1.31082 0.99112 0.86594 0.89267 1.25669
1.02125 0.99175 0.99085 1.70164 1.50933 1.24606 1.14596 0.85164
0.78239 0.78263 0.77747 1.20478 1.22496 1.19812 0.92132 0.90551
0.92585 0.93592 0.90892 0.85425 0.88481 0.88025 0.88683 0.91203
0.88816 0.88963 0.87133 0.91843 0.92455 0.91228 0.91396 0.91727
0.95363 0.98247 0.94492
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.68 9.91 71.98 0.71 -0.97 16
2 C -0.12 -1.84 5.92 30.59 0.18 -1.66 16
3 C -0.04 -0.57 5.69 29.85 0.17 -0.40 16
4 C 0.04 0.73 6.80 25.48 0.17 0.90 16
5 O 0.10 2.12 11.06 76.96 0.85 2.97 16
6 N -0.37 -8.90 12.01 -44.78 -0.54 -9.44 16
7 C 0.05 1.24 7.59 45.16 0.34 1.59 16
8 C -0.08 -1.64 10.49 71.24 0.75 -0.90 16
9 C -0.26 -6.56 4.35 -18.74 -0.08 -6.65 16
10 C 0.60 18.60 7.33 86.66 0.64 19.23 16
11 O -0.56 -21.63 14.10 -4.08 -0.06 -21.69 16
12 N -0.58 -16.69 2.91 -795.02 -2.32 -19.01 16
13 C 0.11 2.18 6.31 86.03 0.54 2.72 16
14 C -0.12 -2.47 5.94 30.83 0.18 -2.28 16
15 C -0.11 -3.39 5.43 30.30 0.16 -3.22 16
16 C 0.15 6.15 2.60 45.50 0.12 6.27 16
17 H 0.00 0.07 8.03 -2.39 -0.02 0.05 16
18 C 0.13 4.77 3.30 46.14 0.15 4.92 16
19 H 0.09 3.15 8.13 -2.38 -0.02 3.13 16
20 C -0.11 -4.75 4.93 31.59 0.16 -4.59 16
21 C 0.18 9.56 5.47 86.87 0.48 10.04 16
22 N -0.61 -31.31 3.35 -670.51 -2.25 -33.55 16
23 C -0.23 -12.77 9.95 84.03 0.84 -11.93 16
24 H 0.09 4.57 7.34 -2.91 -0.02 4.55 16
25 C -0.07 -3.85 5.49 84.86 0.47 -3.38 16
26 N -0.95 -58.16 10.46 21.65 0.23 -57.94 16
27 Si 0.98 45.46 29.55 68.60 2.03 47.49 16
28 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16
29 H -0.30 -14.17 7.11 99.48 0.71 -13.46 16
30 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16
31 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16
32 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16
33 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16
34 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16
35 H 0.07 1.03 8.14 -2.39 -0.02 1.02 16
36 H 0.13 0.97 8.14 -2.39 -0.02 0.95 16
37 H 0.10 1.42 8.00 -2.39 -0.02 1.40 16
38 H 0.10 1.77 8.14 -2.39 -0.02 1.76 16
39 H 0.09 1.69 8.14 -2.39 -0.02 1.68 16
40 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16
41 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16
42 H 0.09 1.58 6.49 -2.39 -0.02 1.57 16
43 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16
44 H 0.06 1.36 8.13 -2.39 -0.02 1.34 16
45 H 0.06 1.86 7.73 -2.39 -0.02 1.84 16
46 H 0.07 2.10 8.11 -2.39 -0.02 2.08 16
47 H 0.07 2.81 8.14 -2.38 -0.02 2.79 16
48 H 0.06 2.93 6.39 -2.39 -0.02 2.91 16
49 H 0.03 1.61 7.19 -2.39 -0.02 1.60 16
50 H 0.00 -0.04 7.81 -2.39 -0.02 -0.06 16
51 H 0.25 14.67 8.31 -92.71 -0.77 13.90 16
Total: -1.00 -72.79 401.63 4.84 -67.95
By element:
Atomic # 1 Polarization: 12.60 SS G_CDS: 0.91 Total: 13.51 kcal
Atomic # 6 Polarization: 3.72 SS G_CDS: 5.98 Total: 9.70 kcal
Atomic # 7 Polarization: -115.07 SS G_CDS: -4.87 Total: -119.94 kcal
Atomic # 8 Polarization: -19.51 SS G_CDS: 0.79 Total: -18.72 kcal
Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.49 kcal
Total: -72.79 4.84 -67.95 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001049469522.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 99.734 kcal
(2) G-P(sol) polarization free energy of solvation -72.791 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.943 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.837 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.954 kcal
(6) G-S(sol) free energy of system = (1) + (5) 31.781 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.07 seconds