Wall clock time and date at job start Wed Apr 1 2020 05:25:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.46751 * 2 1 4 4 C 1.52997 * 109.46836 * 240.00107 * 2 1 3 5 5 C 1.50691 * 109.47278 * 120.00061 * 2 1 3 6 6 C 1.35318 * 126.66535 * 60.34259 * 5 2 1 7 7 C 1.42276 * 103.92033 * 180.09535 * 6 5 2 8 8 C 1.48331 * 126.93608 * 179.85843 * 7 6 5 9 9 O 1.21487 * 120.00362 * 4.72742 * 8 7 6 10 10 N 1.34785 * 119.99557 * 185.00442 * 8 7 6 11 11 C 1.47849 * 122.23121 * 353.89253 * 10 8 7 12 12 C 1.53171 * 110.79863 * 127.45735 * 11 10 8 13 13 C 1.53874 * 111.46486 * 48.80366 * 12 11 10 14 14 C 1.51085 * 107.34036 * 302.91798 * 13 12 11 15 15 H 1.09003 * 108.30603 * 308.75193 * 14 13 12 16 16 C 1.45724 * 122.22521 * 174.18190 * 10 8 7 17 17 H 1.08999 * 111.06646 * 119.48208 * 16 10 8 18 18 C 1.53434 * 116.38146 * 350.11316 * 16 10 8 19 19 C 1.55465 * 101.67267 * 207.26737 * 18 16 10 20 20 N 1.45026 * 119.18507 * 183.87891 * 14 13 12 21 21 C 1.36939 * 126.56445 * 28.79153 * 20 14 13 22 22 H 1.07995 * 119.99820 * 359.97438 * 21 20 14 23 23 C 1.38810 * 119.99687 * 180.02562 * 21 20 14 24 24 N 1.31618 * 120.00693 * 359.97438 * 23 21 20 25 25 Si 1.86806 * 119.99487 * 179.97438 * 23 21 20 26 26 H 1.48507 * 109.46960 * 90.00061 * 25 23 21 27 27 H 1.48497 * 109.47028 * 209.99778 * 25 23 21 28 28 H 1.48497 * 109.47248 * 330.00042 * 25 23 21 29 29 N 1.30984 * 106.12168 * 359.59558 * 7 6 5 30 30 O 1.20896 * 111.44169 * 0.25768 * 29 7 6 31 31 H 1.09004 * 109.47554 * 299.99733 * 1 2 3 32 32 H 1.09001 * 109.47790 * 60.00223 * 1 2 3 33 33 H 1.09000 * 109.47335 * 180.02562 * 1 2 3 34 34 H 1.09002 * 109.46820 * 180.02562 * 3 2 1 35 35 H 1.09007 * 109.47254 * 299.99851 * 3 2 1 36 36 H 1.08996 * 109.47045 * 60.00154 * 3 2 1 37 37 H 1.09000 * 109.47363 * 299.99660 * 4 2 1 38 38 H 1.09007 * 109.47408 * 60.00003 * 4 2 1 39 39 H 1.09002 * 109.47006 * 179.97438 * 4 2 1 40 40 H 1.07992 * 128.04228 * 359.95636 * 6 5 2 41 41 H 1.09006 * 109.16268 * 247.92415 * 11 10 8 42 42 H 1.08997 * 109.15927 * 7.10612 * 11 10 8 43 43 H 1.08995 * 109.22995 * 288.20862 * 12 11 10 44 44 H 1.09007 * 108.92266 * 169.18844 * 12 11 10 45 45 H 1.09001 * 109.88414 * 183.46061 * 13 12 11 46 46 H 1.09000 * 109.88364 * 62.37141 * 13 12 11 47 47 H 1.08997 * 110.98583 * 325.36585 * 18 16 10 48 48 H 1.09002 * 110.98393 * 89.16906 * 18 16 10 49 49 H 1.08997 * 109.96376 * 263.22090 * 19 18 16 50 50 H 1.08999 * 109.96085 * 141.98108 * 19 18 16 51 51 H 0.96992 * 120.00008 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 2.0323 -0.7104 1.2304 6 6 1.7953 -1.9977 1.5735 7 6 2.4875 -2.1562 2.8064 8 6 2.5618 -3.3840 3.6354 9 8 2.0647 -4.4179 3.2357 10 7 3.1761 -3.3511 4.8347 11 6 3.9059 -2.1581 5.3144 12 6 3.4184 -1.7457 6.7067 13 6 3.3719 -2.9479 7.6660 14 6 2.4748 -3.9896 7.0393 15 1 1.5345 -3.5113 6.7650 16 6 3.1703 -4.4913 5.7423 17 1 4.1842 -4.8372 5.9432 18 6 2.2363 -5.6514 5.3736 19 6 1.9345 -6.2676 6.7687 20 7 2.1814 -5.2049 7.7744 21 6 2.1401 -5.3449 9.1360 22 1 2.3389 -4.4953 9.7724 23 6 1.8438 -6.5790 9.6981 24 7 1.6020 -7.6145 8.9225 25 14 1.7881 -6.7701 11.5555 26 1 0.4112 -6.4971 12.0402 27 1 2.1764 -8.1556 11.9224 28 1 2.7325 -5.8094 12.1804 29 7 3.0505 -1.0008 3.0587 30 8 2.8063 -0.1920 2.1939 31 1 -0.3634 0.5138 0.8900 32 1 -0.3635 0.5138 -0.8900 33 1 -0.3634 -1.0276 0.0005 34 1 3.1299 1.4425 -0.0005 35 1 1.6766 1.9564 -0.8900 36 1 1.6766 1.9563 0.8900 37 1 1.6766 -1.7489 -1.2493 38 1 1.6766 -0.2074 -2.1393 39 1 3.1299 -0.7208 -1.2495 40 1 1.2139 -2.7331 1.0375 41 1 4.9715 -2.3838 5.3572 42 1 3.7431 -1.3353 4.6184 43 1 2.4199 -1.3166 6.6249 44 1 4.0969 -0.9941 7.1105 45 1 2.9646 -2.6386 8.6286 46 1 4.3744 -3.3544 7.8000 47 1 1.3241 -5.2839 4.9035 48 1 2.7427 -6.3709 4.7302 49 1 2.5956 -7.1145 6.9523 50 1 0.8943 -6.5902 6.8158 51 1 1.3946 -8.4767 9.3153 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049585224.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:25:46 Heat of formation + Delta-G solvation = 65.684134 kcal Electronic energy + Delta-G solvation = -31953.332892 eV Core-core repulsion = 27857.334389 eV Total energy + Delta-G solvation = -4095.998502 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -45.23890 -40.27645 -37.80932 -37.74438 -35.47873 -34.02741 -32.63983 -32.14197 -31.08722 -28.99098 -28.16338 -27.83562 -27.75827 -25.62887 -24.46902 -23.50043 -23.38568 -21.50617 -21.44483 -20.49652 -19.56803 -18.40863 -17.91171 -17.51568 -16.77578 -16.26218 -15.69625 -15.17622 -14.88847 -14.66067 -14.57634 -14.52130 -14.23251 -14.01589 -13.84829 -13.64544 -13.40235 -12.98131 -12.83370 -12.75343 -12.47402 -12.26425 -12.14460 -12.06861 -11.81656 -11.78343 -11.56076 -11.43454 -11.32545 -10.95508 -10.85019 -10.66006 -10.51885 -10.48753 -10.31631 -10.08235 -9.96965 -9.85457 -9.64946 -9.60490 -9.29534 -8.59088 -8.26592 -6.82027 -5.68756 -3.03045 1.01001 1.55844 2.63040 2.96374 3.26097 3.41502 3.46158 3.48238 3.83753 4.03996 4.37300 4.40819 4.50827 4.57963 4.81812 4.83088 5.06577 5.07295 5.15145 5.21175 5.23201 5.30621 5.37883 5.40041 5.40930 5.42425 5.49790 5.50101 5.62700 5.64686 5.73132 5.75409 5.79973 5.83343 5.85373 6.00311 6.05527 6.11672 6.30085 6.32967 6.42544 6.55177 6.73053 6.77378 6.87478 7.15093 7.54539 7.60937 7.67063 7.84537 7.88419 8.24540 8.27698 9.20686 9.84359 10.52492 11.43410 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.024324 B = 0.002490 C = 0.002376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.835172 B =11244.036959 C =11780.339985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.016 3.984 3 C -0.148 4.148 4 C -0.142 4.142 5 C -0.022 4.022 6 C -0.179 4.179 7 C -0.009 4.009 8 C 0.593 3.407 9 O -0.516 6.516 10 N -0.582 5.582 11 C 0.083 3.917 12 C -0.125 4.125 13 C -0.117 4.117 14 C 0.160 3.840 15 H 0.017 0.983 16 C 0.116 3.884 17 H 0.084 0.916 18 C -0.129 4.129 19 C 0.173 3.827 20 N -0.592 5.592 21 C -0.226 4.226 22 H 0.079 0.921 23 C -0.008 4.008 24 N -0.920 5.920 25 Si 0.911 3.089 26 H -0.289 1.289 27 H -0.291 1.291 28 H -0.281 1.281 29 N -0.333 5.333 30 O 0.113 5.887 31 H 0.062 0.938 32 H 0.071 0.929 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.068 0.932 36 H 0.064 0.936 37 H 0.064 0.936 38 H 0.071 0.929 39 H 0.062 0.938 40 H 0.178 0.822 41 H 0.066 0.934 42 H 0.117 0.883 43 H 0.061 0.939 44 H 0.072 0.928 45 H 0.067 0.933 46 H 0.064 0.936 47 H 0.076 0.924 48 H 0.064 0.936 49 H 0.058 0.942 50 H 0.040 0.960 51 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.143 18.441 -20.265 27.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.015 3.985 3 C -0.205 4.205 4 C -0.199 4.199 5 C -0.085 4.085 6 C -0.201 4.201 7 C -0.168 4.168 8 C 0.378 3.622 9 O -0.390 6.390 10 N -0.314 5.314 11 C -0.039 4.039 12 C -0.164 4.164 13 C -0.155 4.155 14 C 0.051 3.949 15 H 0.034 0.966 16 C 0.012 3.988 17 H 0.102 0.898 18 C -0.167 4.167 19 C 0.048 3.952 20 N -0.317 5.317 21 C -0.354 4.354 22 H 0.097 0.903 23 C -0.204 4.204 24 N -0.567 5.567 25 Si 0.741 3.259 26 H -0.216 1.216 27 H -0.217 1.217 28 H -0.207 1.207 29 N -0.038 5.038 30 O 0.043 5.957 31 H 0.081 0.919 32 H 0.090 0.910 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.087 0.913 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.090 0.910 39 H 0.081 0.919 40 H 0.196 0.804 41 H 0.084 0.916 42 H 0.134 0.866 43 H 0.080 0.920 44 H 0.091 0.909 45 H 0.086 0.914 46 H 0.083 0.917 47 H 0.095 0.905 48 H 0.083 0.917 49 H 0.076 0.924 50 H 0.058 0.942 51 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 2.591 18.091 -19.292 26.574 hybrid contribution -0.424 -0.632 0.693 1.029 sum 2.167 17.459 -18.599 25.601 Atomic orbital electron populations 1.21959 0.91970 1.03136 1.02940 1.19194 0.96156 0.95306 0.87880 1.21911 1.01915 0.93705 1.02947 1.21954 1.01797 1.00746 0.95445 1.24405 0.96667 0.93542 0.93880 1.22343 1.04739 0.96758 0.96273 1.23719 1.01138 0.94323 0.97645 1.16932 0.79370 0.85377 0.80484 1.90804 1.47189 1.30144 1.70897 1.47896 1.51780 1.15715 1.16020 1.22519 0.95572 0.88409 0.97415 1.21940 1.01679 0.98456 0.94331 1.21462 1.00591 0.95005 0.98475 1.20744 0.94707 0.89120 0.90369 0.96606 1.22519 0.99967 0.86763 0.89565 0.89813 1.22935 0.98983 0.95817 0.98988 1.21744 1.00128 0.90757 0.82534 1.44090 1.81339 1.04389 1.01844 1.18991 1.41198 0.95127 0.80078 0.90335 1.24808 1.01919 0.95782 0.97881 1.69941 1.53631 1.00344 1.32816 0.86140 0.77687 0.77002 0.85047 1.21645 1.21687 1.20712 1.73914 1.19520 1.00591 1.09797 1.84779 1.50913 1.35787 1.24258 0.91855 0.91005 0.91666 0.91726 0.91343 0.91682 0.91674 0.91012 0.91912 0.80432 0.91612 0.86593 0.92023 0.90903 0.91411 0.91743 0.90507 0.91735 0.92385 0.94168 0.93706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.77 8.36 37.16 0.31 -0.46 16 2 C 0.02 0.10 0.94 -155.67 -0.15 -0.05 16 3 C -0.15 -0.75 8.07 37.16 0.30 -0.45 16 4 C -0.14 -0.73 8.36 37.16 0.31 -0.42 16 5 C -0.02 -0.20 5.76 -35.35 -0.20 -0.41 16 6 C -0.18 -2.06 10.41 -39.07 -0.41 -2.46 16 7 C -0.01 -0.14 6.98 -82.52 -0.58 -0.71 16 8 C 0.59 10.44 7.66 -12.10 -0.09 10.35 16 9 O -0.52 -10.27 13.95 5.38 0.08 -10.20 16 10 N -0.58 -10.14 2.91 -164.64 -0.48 -10.62 16 11 C 0.08 1.21 6.34 -3.21 -0.02 1.19 16 12 C -0.13 -1.81 5.94 -26.19 -0.16 -1.97 16 13 C -0.12 -2.11 5.45 -27.24 -0.15 -2.26 16 14 C 0.16 3.47 2.58 -68.36 -0.18 3.29 16 15 H 0.02 0.39 8.03 -51.93 -0.42 -0.03 16 16 C 0.12 2.31 3.32 -66.80 -0.22 2.09 16 17 H 0.08 1.68 8.14 -51.93 -0.42 1.26 16 18 C -0.13 -2.80 4.93 -25.20 -0.12 -2.92 16 19 C 0.17 4.43 5.47 -1.69 -0.01 4.42 16 20 N -0.59 -15.46 3.35 -163.28 -0.55 -16.00 16 21 C -0.23 -6.31 9.94 -15.06 -0.15 -6.46 16 22 H 0.08 2.11 7.31 -52.49 -0.38 1.72 16 23 C -0.01 -0.21 5.49 -17.43 -0.10 -0.31 16 24 N -0.92 -27.48 10.46 55.49 0.58 -26.90 16 25 Si 0.91 22.33 29.55 -169.99 -5.02 17.30 16 26 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 27 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 28 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 29 N -0.33 -4.39 8.62 33.29 0.29 -4.10 16 30 O 0.11 1.24 10.65 17.24 0.18 1.43 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 33 H 0.06 0.37 8.03 -51.93 -0.42 -0.05 16 34 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 36 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.06 0.35 8.02 -51.93 -0.42 -0.07 16 38 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 39 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.18 1.82 8.06 -52.49 -0.42 1.39 16 41 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.12 1.60 3.99 -61.09 -0.24 1.35 16 43 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 44 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 45 H 0.07 1.26 7.70 -51.93 -0.40 0.86 16 46 H 0.06 1.16 8.12 -51.93 -0.42 0.74 16 47 H 0.08 1.73 6.39 -51.93 -0.33 1.40 16 48 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 49 H 0.06 1.61 7.19 -51.93 -0.37 1.24 16 50 H 0.04 1.12 7.81 -51.93 -0.41 0.72 16 51 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 393.47 15.07 5.93 5.93 Total: -1.00 -32.36 393.47 -9.04 -41.40 By element: Atomic # 1 Polarization: 7.74 SS G_CDS: -8.44 Total: -0.70 kcal Atomic # 6 Polarization: 4.07 SS G_CDS: -1.61 Total: 2.46 kcal Atomic # 7 Polarization: -57.46 SS G_CDS: -0.16 Total: -57.62 kcal Atomic # 8 Polarization: -9.03 SS G_CDS: 0.26 Total: -8.77 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -32.36 -9.04 -41.40 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049585224.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.082 kcal (2) G-P(sol) polarization free energy of solvation -32.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.398 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds