Wall clock time and date at job start Wed Apr 1 2020 05:25:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.46751 * 2 1 4 4 C 1.52997 * 109.46836 * 240.00107 * 2 1 3 5 5 C 1.50691 * 109.47278 * 120.00061 * 2 1 3 6 6 C 1.35318 * 126.66535 * 60.34259 * 5 2 1 7 7 C 1.42276 * 103.92033 * 180.09535 * 6 5 2 8 8 C 1.48331 * 126.93608 * 179.85843 * 7 6 5 9 9 O 1.21487 * 120.00362 * 4.72742 * 8 7 6 10 10 N 1.34785 * 119.99557 * 185.00442 * 8 7 6 11 11 C 1.47849 * 122.23121 * 353.89253 * 10 8 7 12 12 C 1.53171 * 110.79863 * 127.45735 * 11 10 8 13 13 C 1.53874 * 111.46486 * 48.80366 * 12 11 10 14 14 C 1.51085 * 107.34036 * 302.91798 * 13 12 11 15 15 H 1.09003 * 108.30603 * 308.75193 * 14 13 12 16 16 C 1.45724 * 122.22521 * 174.18190 * 10 8 7 17 17 H 1.08999 * 111.06646 * 119.48208 * 16 10 8 18 18 C 1.53434 * 116.38146 * 350.11316 * 16 10 8 19 19 C 1.55465 * 101.67267 * 207.26737 * 18 16 10 20 20 N 1.45026 * 119.18507 * 183.87891 * 14 13 12 21 21 C 1.36939 * 126.56445 * 28.79153 * 20 14 13 22 22 H 1.07995 * 119.99820 * 359.97438 * 21 20 14 23 23 C 1.38810 * 119.99687 * 180.02562 * 21 20 14 24 24 N 1.31618 * 120.00693 * 359.97438 * 23 21 20 25 25 Si 1.86806 * 119.99487 * 179.97438 * 23 21 20 26 26 H 1.48507 * 109.46960 * 90.00061 * 25 23 21 27 27 H 1.48497 * 109.47028 * 209.99778 * 25 23 21 28 28 H 1.48497 * 109.47248 * 330.00042 * 25 23 21 29 29 N 1.30984 * 106.12168 * 359.59558 * 7 6 5 30 30 O 1.20896 * 111.44169 * 0.25768 * 29 7 6 31 31 H 1.09004 * 109.47554 * 299.99733 * 1 2 3 32 32 H 1.09001 * 109.47790 * 60.00223 * 1 2 3 33 33 H 1.09000 * 109.47335 * 180.02562 * 1 2 3 34 34 H 1.09002 * 109.46820 * 180.02562 * 3 2 1 35 35 H 1.09007 * 109.47254 * 299.99851 * 3 2 1 36 36 H 1.08996 * 109.47045 * 60.00154 * 3 2 1 37 37 H 1.09000 * 109.47363 * 299.99660 * 4 2 1 38 38 H 1.09007 * 109.47408 * 60.00003 * 4 2 1 39 39 H 1.09002 * 109.47006 * 179.97438 * 4 2 1 40 40 H 1.07992 * 128.04228 * 359.95636 * 6 5 2 41 41 H 1.09006 * 109.16268 * 247.92415 * 11 10 8 42 42 H 1.08997 * 109.15927 * 7.10612 * 11 10 8 43 43 H 1.08995 * 109.22995 * 288.20862 * 12 11 10 44 44 H 1.09007 * 108.92266 * 169.18844 * 12 11 10 45 45 H 1.09001 * 109.88414 * 183.46061 * 13 12 11 46 46 H 1.09000 * 109.88364 * 62.37141 * 13 12 11 47 47 H 1.08997 * 110.98583 * 325.36585 * 18 16 10 48 48 H 1.09002 * 110.98393 * 89.16906 * 18 16 10 49 49 H 1.08997 * 109.96376 * 263.22090 * 19 18 16 50 50 H 1.08999 * 109.96085 * 141.98108 * 19 18 16 51 51 H 0.96992 * 120.00008 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 2.0323 -0.7104 1.2304 6 6 1.7953 -1.9977 1.5735 7 6 2.4875 -2.1562 2.8064 8 6 2.5618 -3.3840 3.6354 9 8 2.0647 -4.4179 3.2357 10 7 3.1761 -3.3511 4.8347 11 6 3.9059 -2.1581 5.3144 12 6 3.4184 -1.7457 6.7067 13 6 3.3719 -2.9479 7.6660 14 6 2.4748 -3.9896 7.0393 15 1 1.5345 -3.5113 6.7650 16 6 3.1703 -4.4913 5.7423 17 1 4.1842 -4.8372 5.9432 18 6 2.2363 -5.6514 5.3736 19 6 1.9345 -6.2676 6.7687 20 7 2.1814 -5.2049 7.7744 21 6 2.1401 -5.3449 9.1360 22 1 2.3389 -4.4953 9.7724 23 6 1.8438 -6.5790 9.6981 24 7 1.6020 -7.6145 8.9225 25 14 1.7881 -6.7701 11.5555 26 1 0.4112 -6.4971 12.0402 27 1 2.1764 -8.1556 11.9224 28 1 2.7325 -5.8094 12.1804 29 7 3.0505 -1.0008 3.0587 30 8 2.8063 -0.1920 2.1939 31 1 -0.3634 0.5138 0.8900 32 1 -0.3635 0.5138 -0.8900 33 1 -0.3634 -1.0276 0.0005 34 1 3.1299 1.4425 -0.0005 35 1 1.6766 1.9564 -0.8900 36 1 1.6766 1.9563 0.8900 37 1 1.6766 -1.7489 -1.2493 38 1 1.6766 -0.2074 -2.1393 39 1 3.1299 -0.7208 -1.2495 40 1 1.2139 -2.7331 1.0375 41 1 4.9715 -2.3838 5.3572 42 1 3.7431 -1.3353 4.6184 43 1 2.4199 -1.3166 6.6249 44 1 4.0969 -0.9941 7.1105 45 1 2.9646 -2.6386 8.6286 46 1 4.3744 -3.3544 7.8000 47 1 1.3241 -5.2839 4.9035 48 1 2.7427 -6.3709 4.7302 49 1 2.5956 -7.1145 6.9523 50 1 0.8943 -6.5902 6.8158 51 1 1.3946 -8.4767 9.3153 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049585224.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:25:45 Heat of formation + Delta-G solvation = 47.631265 kcal Electronic energy + Delta-G solvation = -31954.115723 eV Core-core repulsion = 27857.334389 eV Total energy + Delta-G solvation = -4096.781333 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -46.21365 -41.78324 -39.39495 -38.27685 -37.08333 -35.16862 -34.25442 -33.91569 -32.03564 -30.89132 -29.76197 -28.29870 -28.14728 -27.03668 -26.38660 -24.78582 -24.27120 -22.94893 -22.74333 -21.92660 -21.27351 -19.62762 -18.88219 -18.58781 -18.42443 -17.50117 -17.28555 -16.73868 -16.47243 -15.93780 -15.75497 -15.47141 -15.37374 -15.09460 -14.95596 -14.94385 -14.63846 -14.35714 -14.28856 -13.95530 -13.53238 -13.36063 -13.19222 -13.16936 -12.96420 -12.75565 -12.72480 -12.53697 -12.42066 -12.30685 -12.07789 -11.99462 -11.94009 -11.85006 -11.77686 -11.74841 -11.57591 -11.55087 -11.40517 -10.91296 -10.71936 -10.47231 -9.74531 -8.95938 -7.86639 -5.24169 -0.02414 0.62801 1.44520 1.46940 1.54818 1.57061 1.90780 1.97654 2.48099 2.71127 3.19653 3.31746 3.36599 3.69861 3.78189 3.84239 3.94617 3.96516 3.97729 3.98030 4.02114 4.17160 4.21436 4.26287 4.40149 4.47488 4.48951 4.57219 4.79406 4.80457 4.81874 4.82953 4.89746 4.91791 4.94144 5.01310 5.03503 5.03982 5.06071 5.12814 5.20128 5.31499 5.32964 5.41382 5.43748 5.45971 5.50721 5.53579 5.67053 6.13980 6.20959 6.77469 7.02306 7.03276 7.71593 8.41280 9.25289 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.024324 B = 0.002490 C = 0.002376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.835172 B =11244.036959 C =11780.339985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.017 3.983 3 C -0.148 4.148 4 C -0.142 4.142 5 C 0.000 4.000 6 C -0.190 4.190 7 C -0.034 4.034 8 C 0.589 3.411 9 O -0.549 6.549 10 N -0.585 5.585 11 C 0.081 3.919 12 C -0.115 4.115 13 C -0.111 4.111 14 C 0.155 3.845 15 H -0.004 1.004 16 C 0.130 3.870 17 H 0.087 0.913 18 C -0.111 4.111 19 C 0.184 3.816 20 N -0.610 5.610 21 C -0.235 4.235 22 H 0.089 0.911 23 C -0.068 4.068 24 N -0.954 5.954 25 Si 0.981 3.019 26 H -0.288 1.288 27 H -0.295 1.295 28 H -0.264 1.264 29 N -0.338 5.338 30 O 0.126 5.874 31 H 0.056 0.944 32 H 0.094 0.906 33 H 0.059 0.941 34 H 0.062 0.938 35 H 0.089 0.911 36 H 0.060 0.940 37 H 0.059 0.941 38 H 0.093 0.907 39 H 0.059 0.941 40 H 0.186 0.814 41 H 0.083 0.917 42 H 0.130 0.870 43 H 0.056 0.944 44 H 0.111 0.889 45 H 0.061 0.939 46 H 0.067 0.933 47 H 0.067 0.933 48 H 0.071 0.929 49 H 0.030 0.970 50 H 0.003 0.997 51 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.133 21.783 -21.405 30.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.016 3.984 3 C -0.205 4.205 4 C -0.199 4.199 5 C -0.063 4.063 6 C -0.212 4.212 7 C -0.191 4.191 8 C 0.376 3.624 9 O -0.426 6.426 10 N -0.317 5.317 11 C -0.040 4.040 12 C -0.153 4.153 13 C -0.149 4.149 14 C 0.047 3.953 15 H 0.014 0.986 16 C 0.025 3.975 17 H 0.105 0.895 18 C -0.150 4.150 19 C 0.059 3.941 20 N -0.335 5.335 21 C -0.363 4.363 22 H 0.107 0.893 23 C -0.261 4.261 24 N -0.603 5.603 25 Si 0.809 3.191 26 H -0.215 1.215 27 H -0.221 1.221 28 H -0.189 1.189 29 N -0.041 5.041 30 O 0.053 5.947 31 H 0.075 0.925 32 H 0.113 0.887 33 H 0.078 0.922 34 H 0.082 0.918 35 H 0.108 0.892 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.112 0.888 39 H 0.078 0.922 40 H 0.203 0.797 41 H 0.102 0.898 42 H 0.147 0.853 43 H 0.075 0.925 44 H 0.129 0.871 45 H 0.080 0.920 46 H 0.086 0.914 47 H 0.085 0.915 48 H 0.089 0.911 49 H 0.049 0.951 50 H 0.021 0.979 51 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 3.608 21.484 -20.425 29.862 hybrid contribution -0.785 -1.578 0.932 1.994 sum 2.822 19.905 -19.493 28.003 Atomic orbital electron populations 1.21994 0.91183 1.03099 1.03786 1.19438 0.96631 0.95853 0.86480 1.21942 1.01875 0.92788 1.03876 1.21985 1.01637 1.00685 0.95622 1.25014 0.94685 0.92836 0.93807 1.22486 1.05171 0.97968 0.95606 1.23367 1.03389 0.93734 0.98603 1.17325 0.78438 0.86118 0.80522 1.90773 1.48388 1.31674 1.71741 1.47955 1.52215 1.15728 1.15806 1.22763 0.96127 0.87547 0.97562 1.21902 1.02559 0.97427 0.93438 1.21422 0.99494 0.95117 0.98885 1.20881 0.94777 0.88487 0.91154 0.98622 1.22154 0.99188 0.86850 0.89296 0.89495 1.22674 0.99256 0.96681 0.96386 1.21445 0.97168 0.90601 0.84915 1.44337 1.81471 1.05923 1.01774 1.19409 1.40240 0.95454 0.81214 0.89319 1.25713 1.02219 0.95605 1.02577 1.70165 1.54971 1.00568 1.34605 0.85045 0.77767 0.76815 0.79504 1.21527 1.22141 1.18856 1.73820 1.19537 1.00182 1.10524 1.84752 1.50633 1.35122 1.24192 0.92484 0.88732 0.92203 0.91845 0.89228 0.92049 0.92147 0.88785 0.92225 0.79711 0.89844 0.85334 0.92492 0.87121 0.92035 0.91394 0.91468 0.91079 0.95121 0.97879 0.94350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.18 8.36 71.98 0.60 -0.57 16 2 C 0.02 0.16 0.94 -52.93 -0.05 0.11 16 3 C -0.15 -1.03 8.07 71.98 0.58 -0.44 16 4 C -0.14 -1.06 8.36 71.98 0.60 -0.46 16 5 C 0.00 0.00 5.76 25.01 0.14 0.15 16 6 C -0.19 -4.18 10.41 22.60 0.24 -3.94 16 7 C -0.03 -0.95 6.98 42.96 0.30 -0.65 16 8 C 0.59 20.79 7.66 86.93 0.67 21.46 16 9 O -0.55 -22.42 13.95 -3.68 -0.05 -22.47 16 10 N -0.59 -20.12 2.91 -793.11 -2.31 -22.43 16 11 C 0.08 2.18 6.34 86.18 0.55 2.72 16 12 C -0.11 -3.04 5.94 30.95 0.18 -2.85 16 13 C -0.11 -3.88 5.45 30.26 0.16 -3.71 16 14 C 0.16 6.83 2.58 45.50 0.12 6.95 16 15 H 0.00 -0.17 8.03 -2.39 -0.02 -0.19 16 16 C 0.13 5.25 3.32 46.14 0.15 5.40 16 17 H 0.09 3.48 8.14 -2.39 -0.02 3.46 16 18 C -0.11 -5.06 4.93 31.59 0.16 -4.91 16 19 C 0.18 9.99 5.47 86.86 0.48 10.46 16 20 N -0.61 -32.95 3.35 -670.50 -2.25 -35.19 16 21 C -0.23 -13.36 9.94 84.03 0.84 -12.52 16 22 H 0.09 4.75 7.31 -2.91 -0.02 4.73 16 23 C -0.07 -3.99 5.49 84.86 0.47 -3.52 16 24 N -0.95 -59.39 10.46 21.65 0.23 -59.17 16 25 Si 0.98 46.60 29.55 68.60 2.03 48.62 16 26 H -0.29 -13.55 7.11 99.48 0.71 -12.85 16 27 H -0.29 -14.11 7.11 99.48 0.71 -13.40 16 28 H -0.26 -11.68 7.11 99.48 0.71 -10.98 16 29 N -0.34 -8.30 8.62 -49.52 -0.43 -8.73 16 30 O 0.13 2.51 10.65 71.87 0.77 3.27 16 31 H 0.06 0.55 8.14 -2.38 -0.02 0.53 16 32 H 0.09 0.38 8.14 -2.39 -0.02 0.36 16 33 H 0.06 0.57 8.03 -2.39 -0.02 0.55 16 34 H 0.06 0.47 8.14 -2.39 -0.02 0.46 16 35 H 0.09 0.28 8.14 -2.38 -0.02 0.26 16 36 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 37 H 0.06 0.52 8.02 -2.39 -0.02 0.51 16 38 H 0.09 0.32 8.14 -2.38 -0.02 0.30 16 39 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 40 H 0.19 3.70 8.06 -2.91 -0.02 3.67 16 41 H 0.08 1.98 8.14 -2.38 -0.02 1.96 16 42 H 0.13 3.22 3.99 -20.48 -0.08 3.14 16 43 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 44 H 0.11 2.17 8.14 -2.38 -0.02 2.16 16 45 H 0.06 2.22 7.70 -2.39 -0.02 2.20 16 46 H 0.07 2.33 8.12 -2.39 -0.02 2.31 16 47 H 0.07 3.19 6.39 -2.39 -0.02 3.17 16 48 H 0.07 3.10 8.14 -2.39 -0.02 3.08 16 49 H 0.03 1.81 7.19 -2.39 -0.02 1.79 16 50 H 0.00 0.18 7.81 -2.39 -0.02 0.16 16 51 H 0.25 14.95 8.31 -92.71 -0.77 14.18 16 Total: -1.00 -73.37 393.47 5.01 -68.36 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: 0.84 Total: 14.07 kcal Atomic # 6 Polarization: 7.48 SS G_CDS: 6.18 Total: 13.66 kcal Atomic # 7 Polarization: -120.76 SS G_CDS: -4.75 Total: -125.52 kcal Atomic # 8 Polarization: -19.91 SS G_CDS: 0.71 Total: -19.20 kcal Atomic # 14 Polarization: 46.60 SS G_CDS: 2.03 Total: 48.62 kcal Total: -73.37 5.01 -68.36 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049585224.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.988 kcal (2) G-P(sol) polarization free energy of solvation -73.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.357 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds