Wall clock time and date at job start Wed Apr 1 2020 05:28:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52993 * 109.47370 * 2 1 4 4 C 1.52996 * 109.46971 * 239.99463 * 2 1 3 5 5 C 1.50704 * 109.46593 * 119.99661 * 2 1 3 6 6 O 1.34253 * 126.52289 * 245.60678 * 5 2 1 7 7 C 1.34049 * 108.22682 * 179.97438 * 6 5 2 8 8 N 1.29934 * 109.24329 * 359.74909 * 7 6 5 9 9 C 1.36071 * 108.47823 * 0.40410 * 8 7 6 10 10 C 1.47410 * 126.45081 * 179.85955 * 9 8 7 11 11 O 1.21618 * 119.99934 * 104.44691 * 10 9 8 12 12 N 1.34775 * 120.00095 * 284.45233 * 10 9 8 13 13 C 1.47848 * 122.22862 * 354.72201 * 12 10 9 14 14 C 1.52282 * 110.74203 * 126.43188 * 13 12 10 15 15 C 1.53866 * 111.06136 * 49.89465 * 14 13 12 16 16 C 1.51089 * 107.40032 * 302.09060 * 15 14 13 17 17 H 1.09002 * 108.74028 * 308.49696 * 16 15 14 18 18 C 1.45728 * 122.22671 * 174.70431 * 12 10 9 19 19 H 1.09003 * 111.06574 * 119.50548 * 18 12 10 20 20 C 1.53431 * 117.01079 * 350.43236 * 18 12 10 21 21 C 1.55467 * 101.67291 * 207.01430 * 20 18 12 22 22 N 1.45028 * 119.18605 * 183.22891 * 16 15 14 23 23 C 1.36939 * 126.56263 * 28.79540 * 22 16 15 24 24 H 1.08004 * 119.99451 * 4.93503 * 23 22 16 25 25 C 1.38804 * 120.00098 * 184.93353 * 23 22 16 26 26 N 1.31623 * 119.99810 * 5.12463 * 25 23 22 27 27 Si 1.86801 * 120.00203 * 185.12878 * 25 23 22 28 28 H 1.48496 * 109.47290 * 94.99698 * 27 25 23 29 29 H 1.48497 * 109.47232 * 214.99650 * 27 25 23 30 30 H 1.48505 * 109.46678 * 334.99747 * 27 25 23 31 31 H 1.09009 * 109.47063 * 294.69277 * 1 2 3 32 32 H 1.09001 * 109.46875 * 54.68775 * 1 2 3 33 33 H 1.09001 * 109.47528 * 174.69873 * 1 2 3 34 34 H 1.08999 * 109.46987 * 180.02562 * 3 2 1 35 35 H 1.09006 * 109.46535 * 299.99679 * 3 2 1 36 36 H 1.08998 * 109.47684 * 59.99756 * 3 2 1 37 37 H 1.09005 * 109.47070 * 305.14596 * 4 2 1 38 38 H 1.08998 * 109.47100 * 65.14640 * 4 2 1 39 39 H 1.08995 * 109.47274 * 185.15166 * 4 2 1 40 40 H 1.08001 * 125.38166 * 179.97438 * 7 6 5 41 41 H 1.09001 * 109.16231 * 247.90264 * 13 12 10 42 42 H 1.08996 * 109.16022 * 7.14559 * 13 12 10 43 43 H 1.08998 * 110.11668 * 288.96348 * 14 13 12 44 44 H 1.08998 * 108.48085 * 169.74926 * 14 13 12 45 45 H 1.08999 * 109.88589 * 182.60170 * 15 14 13 46 46 H 1.09001 * 109.89019 * 61.58456 * 15 14 13 47 47 H 1.08994 * 110.98560 * 325.11442 * 20 18 12 48 48 H 1.09001 * 110.98365 * 88.91987 * 20 18 12 49 49 H 1.09000 * 109.95878 * 141.98082 * 21 20 18 50 50 H 1.08995 * 109.96728 * 263.18604 * 21 20 18 51 51 H 0.97008 * 119.99857 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 2.0323 -0.7104 1.2306 6 8 2.7186 -0.1618 2.2456 7 6 2.9784 -1.1225 3.1437 8 7 2.4748 -2.2455 2.7273 9 6 1.8759 -2.0299 1.5246 10 6 1.1827 -3.0351 0.6987 11 8 -0.0325 -3.0514 0.6530 12 7 1.8957 -3.9362 -0.0057 13 6 3.3717 -3.8915 -0.0776 14 6 3.9721 -5.2317 0.3253 15 6 3.2999 -6.3893 -0.4335 16 6 1.8215 -6.3319 -0.1274 17 1 1.6891 -6.2879 0.9537 18 6 1.2629 -5.0197 -0.7470 19 1 1.4924 -4.9531 -1.8105 20 6 -0.2384 -5.2374 -0.5172 21 6 -0.3881 -6.7527 -0.8311 22 7 0.9484 -7.3594 -0.6614 23 6 1.2921 -8.6534 -0.9491 24 1 2.2797 -9.0166 -0.7057 25 6 0.3713 -9.4981 -1.5534 26 7 -0.7958 -9.0296 -1.9415 27 14 0.7884 -11.3000 -1.8157 28 1 0.2511 -12.1019 -0.6872 29 1 0.1827 -11.7682 -3.0881 30 1 2.2632 -11.4622 -1.8803 31 1 -0.3634 0.4293 0.9338 32 1 -0.3633 0.5940 -0.8386 33 1 -0.3634 -1.0233 -0.0949 34 1 3.1301 1.4423 -0.0005 35 1 1.6767 1.9562 -0.8901 36 1 1.6768 1.9563 0.8899 37 1 1.6033 -1.7190 -1.2963 38 1 1.7539 -0.1571 -2.1368 39 1 3.1260 -0.8020 -1.2043 40 1 3.5177 -0.9841 4.0691 41 1 3.6728 -3.6347 -1.0933 42 1 3.7403 -3.1289 0.6083 43 1 3.8506 -5.3900 1.3968 44 1 5.0356 -5.2196 0.0867 45 1 3.7113 -7.3411 -0.0976 46 1 3.4613 -6.2734 -1.5052 47 1 -0.5100 -5.0242 0.5166 48 1 -0.8301 -4.6355 -1.2068 49 1 -1.1018 -7.2064 -0.1434 50 1 -0.7244 -6.8883 -1.8590 51 1 -1.4395 -9.6200 -2.3636 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049834233.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:28:41 Heat of formation + Delta-G solvation = 21.041805 kcal Electronic energy + Delta-G solvation = -33138.806782 eV Core-core repulsion = 29040.872443 eV Total energy + Delta-G solvation = -4097.934339 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -43.61626 -40.24967 -37.93309 -37.06783 -35.49884 -34.81419 -32.61257 -32.14296 -30.01829 -28.82117 -28.22429 -27.65502 -27.48631 -25.33910 -24.44677 -23.33788 -23.00976 -21.47220 -21.03158 -20.12748 -19.55020 -19.12845 -17.44609 -16.98625 -16.58386 -16.02867 -15.67043 -15.55037 -15.05650 -14.79549 -14.43678 -14.27253 -14.18149 -14.01663 -13.77606 -13.64335 -13.32564 -12.83276 -12.62354 -12.52481 -12.43163 -12.24422 -11.94186 -11.88424 -11.80634 -11.59560 -11.47071 -11.33697 -11.17398 -11.08037 -10.82940 -10.71068 -10.66162 -10.48141 -10.43595 -10.08511 -9.98510 -9.82305 -9.62641 -9.24382 -8.97744 -8.59775 -8.23921 -6.79774 -5.64995 -3.03312 1.15068 2.22042 2.38688 2.67335 3.12419 3.42237 3.47248 3.49222 3.97276 4.26940 4.41280 4.51973 4.57211 4.71383 4.82990 4.87343 5.18120 5.24626 5.29378 5.36393 5.38042 5.39375 5.44680 5.46976 5.49400 5.59728 5.60242 5.65044 5.67888 5.72489 5.79961 5.85624 5.88492 5.94343 6.00407 6.05595 6.11813 6.19297 6.29046 6.33944 6.43995 6.57750 6.75369 6.79899 6.90367 7.18167 7.40005 7.54711 7.63852 7.71914 7.88185 8.29696 8.32641 9.22502 9.86316 10.53555 11.43269 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.020310 B = 0.003121 C = 0.002947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1378.307919 B = 8968.693317 C = 9497.762078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.017 3.983 3 C -0.142 4.142 4 C -0.146 4.146 5 C 0.017 3.983 6 O -0.196 6.196 7 C 0.165 3.835 8 N -0.454 5.454 9 C -0.046 4.046 10 C 0.607 3.393 11 O -0.516 6.516 12 N -0.584 5.584 13 C 0.117 3.883 14 C -0.128 4.128 15 C -0.114 4.114 16 C 0.159 3.841 17 H 0.020 0.980 18 C 0.116 3.884 19 H 0.083 0.917 20 C -0.127 4.127 21 C 0.166 3.834 22 N -0.591 5.591 23 C -0.226 4.226 24 H 0.078 0.922 25 C -0.007 4.007 26 N -0.918 5.918 27 Si 0.910 3.090 28 H -0.290 1.290 29 H -0.291 1.291 30 H -0.281 1.281 31 H 0.057 0.943 32 H 0.069 0.931 33 H 0.084 0.916 34 H 0.060 0.940 35 H 0.068 0.932 36 H 0.061 0.939 37 H 0.067 0.933 38 H 0.074 0.926 39 H 0.060 0.940 40 H 0.253 0.747 41 H 0.069 0.931 42 H 0.071 0.929 43 H 0.068 0.932 44 H 0.070 0.930 45 H 0.067 0.933 46 H 0.064 0.936 47 H 0.075 0.925 48 H 0.063 0.937 49 H 0.029 0.971 50 H 0.073 0.927 51 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.123 21.930 4.440 24.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.016 3.984 3 C -0.199 4.199 4 C -0.204 4.204 5 C -0.039 4.039 6 O -0.083 6.083 7 C -0.062 4.062 8 N -0.183 5.183 9 C -0.167 4.167 10 C 0.393 3.607 11 O -0.391 6.391 12 N -0.316 5.316 13 C -0.006 4.006 14 C -0.167 4.167 15 C -0.153 4.153 16 C 0.050 3.950 17 H 0.037 0.963 18 C 0.012 3.988 19 H 0.101 0.899 20 C -0.165 4.165 21 C 0.041 3.959 22 N -0.315 5.315 23 C -0.354 4.354 24 H 0.096 0.904 25 C -0.204 4.204 26 N -0.565 5.565 27 Si 0.741 3.259 28 H -0.217 1.217 29 H -0.218 1.218 30 H -0.207 1.207 31 H 0.077 0.923 32 H 0.088 0.912 33 H 0.103 0.897 34 H 0.079 0.921 35 H 0.087 0.913 36 H 0.080 0.920 37 H 0.086 0.914 38 H 0.093 0.907 39 H 0.079 0.921 40 H 0.269 0.731 41 H 0.087 0.913 42 H 0.089 0.911 43 H 0.086 0.914 44 H 0.089 0.911 45 H 0.085 0.915 46 H 0.083 0.917 47 H 0.094 0.906 48 H 0.082 0.918 49 H 0.047 0.953 50 H 0.091 0.909 51 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 9.389 21.166 4.641 23.615 hybrid contribution 0.393 -0.407 -0.030 0.566 sum 9.782 20.759 4.611 23.407 Atomic orbital electron populations 1.22107 0.91441 1.04999 1.02308 1.19256 0.96673 0.95022 0.87418 1.21880 1.01451 0.93857 1.02743 1.22022 1.01421 1.01325 0.95585 1.23537 0.97269 0.92025 0.91024 1.84315 1.56450 1.40641 1.26855 1.28047 1.01246 0.80625 0.96319 1.70879 1.11132 1.26946 1.09346 1.21506 1.06093 0.93810 0.95323 1.16689 0.86022 0.79419 0.78611 1.90812 1.12591 1.70914 1.64775 1.47910 1.06979 1.28043 1.48671 1.21596 0.79185 0.98542 1.01273 1.21809 0.99349 0.94190 1.01326 1.21424 0.96398 0.97458 1.00014 1.20785 0.90358 0.87989 0.95872 0.96284 1.22484 0.96143 0.85307 0.94827 0.89908 1.22896 0.92533 0.98692 1.02418 1.21759 0.86671 0.85885 1.01582 1.43955 1.05320 1.06869 1.75384 1.19005 0.98497 0.84979 1.32907 0.90407 1.24813 0.96634 0.98383 1.00536 1.69934 1.07337 1.33780 1.45493 0.86126 0.77463 0.85060 0.77268 1.21716 1.21778 1.20651 0.92342 0.91240 0.89688 0.92097 0.91337 0.92005 0.91364 0.90682 0.92066 0.73134 0.91309 0.91072 0.91368 0.91126 0.91460 0.91712 0.90646 0.91804 0.95307 0.90886 0.93772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 8.34 37.16 0.31 -1.33 16 2 C 0.02 0.17 0.80 -155.66 -0.13 0.04 16 3 C -0.14 -1.08 8.07 37.15 0.30 -0.78 16 4 C -0.15 -1.42 8.18 37.16 0.30 -1.11 16 5 C 0.02 0.20 5.73 -35.08 -0.20 0.00 16 6 O -0.20 -2.04 10.20 6.52 0.07 -1.98 16 7 C 0.17 1.57 13.19 51.96 0.69 2.26 16 8 N -0.45 -6.28 11.25 -11.48 -0.13 -6.41 16 9 C -0.05 -0.68 4.84 -83.02 -0.40 -1.08 16 10 C 0.61 10.34 5.10 -12.53 -0.06 10.28 16 11 O -0.52 -10.14 12.17 5.26 0.06 -10.07 16 12 N -0.58 -9.53 2.63 -165.51 -0.43 -9.97 16 13 C 0.12 1.54 6.29 -3.67 -0.02 1.52 16 14 C -0.13 -1.75 5.93 -26.65 -0.16 -1.91 16 15 C -0.11 -2.00 5.44 -27.24 -0.15 -2.15 16 16 C 0.16 3.38 2.60 -68.36 -0.18 3.20 16 17 H 0.02 0.46 8.06 -51.93 -0.42 0.04 16 18 C 0.12 2.23 3.29 -66.80 -0.22 2.01 16 19 H 0.08 1.58 8.14 -51.93 -0.42 1.16 16 20 C -0.13 -2.71 4.98 -25.20 -0.13 -2.83 16 21 C 0.17 4.20 5.57 -2.04 -0.01 4.19 16 22 N -0.59 -15.22 3.32 -163.79 -0.54 -15.76 16 23 C -0.23 -6.24 9.91 -15.06 -0.15 -6.39 16 24 H 0.08 2.07 7.39 -52.48 -0.39 1.68 16 25 C -0.01 -0.20 5.47 -17.43 -0.10 -0.30 16 26 N -0.92 -27.11 10.46 55.49 0.58 -26.53 16 27 Si 0.91 22.17 29.56 -169.99 -5.02 17.15 16 28 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 29 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 30 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 31 H 0.06 0.63 8.14 -51.92 -0.42 0.20 16 32 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.08 1.18 5.63 -51.93 -0.29 0.89 16 34 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 35 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.07 0.83 6.05 -51.93 -0.31 0.51 16 38 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.25 1.02 8.06 -52.49 -0.42 0.60 16 41 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.07 0.88 6.41 -51.93 -0.33 0.55 16 43 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 44 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.07 1.23 7.75 -51.93 -0.40 0.82 16 46 H 0.06 1.12 8.12 -51.93 -0.42 0.70 16 47 H 0.07 1.71 6.43 -51.93 -0.33 1.37 16 48 H 0.06 1.30 8.14 -51.93 -0.42 0.87 16 49 H 0.03 0.80 8.10 -51.93 -0.42 0.38 16 50 H 0.07 2.02 6.69 -51.93 -0.35 1.67 16 51 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 389.35 15.07 5.87 5.87 Total: -1.00 -33.45 389.35 -8.16 -41.61 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: -8.30 Total: 0.47 kcal Atomic # 6 Polarization: 5.92 SS G_CDS: -0.30 Total: 5.62 kcal Atomic # 7 Polarization: -58.14 SS G_CDS: -0.53 Total: -58.67 kcal Atomic # 8 Polarization: -12.18 SS G_CDS: 0.13 Total: -12.05 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -33.45 -8.16 -41.61 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049834233.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.649 kcal (2) G-P(sol) polarization free energy of solvation -33.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.607 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds