Wall clock time and date at job start Wed Apr 1 2020 05:28:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52993 * 109.47370 * 2 1 4 4 C 1.52996 * 109.46971 * 239.99463 * 2 1 3 5 5 C 1.50704 * 109.46593 * 119.99661 * 2 1 3 6 6 O 1.34253 * 126.52289 * 245.60678 * 5 2 1 7 7 C 1.34049 * 108.22682 * 179.97438 * 6 5 2 8 8 N 1.29934 * 109.24329 * 359.74909 * 7 6 5 9 9 C 1.36071 * 108.47823 * 0.40410 * 8 7 6 10 10 C 1.47410 * 126.45081 * 179.85955 * 9 8 7 11 11 O 1.21618 * 119.99934 * 104.44691 * 10 9 8 12 12 N 1.34775 * 120.00095 * 284.45233 * 10 9 8 13 13 C 1.47848 * 122.22862 * 354.72201 * 12 10 9 14 14 C 1.52282 * 110.74203 * 126.43188 * 13 12 10 15 15 C 1.53866 * 111.06136 * 49.89465 * 14 13 12 16 16 C 1.51089 * 107.40032 * 302.09060 * 15 14 13 17 17 H 1.09002 * 108.74028 * 308.49696 * 16 15 14 18 18 C 1.45728 * 122.22671 * 174.70431 * 12 10 9 19 19 H 1.09003 * 111.06574 * 119.50548 * 18 12 10 20 20 C 1.53431 * 117.01079 * 350.43236 * 18 12 10 21 21 C 1.55467 * 101.67291 * 207.01430 * 20 18 12 22 22 N 1.45028 * 119.18605 * 183.22891 * 16 15 14 23 23 C 1.36939 * 126.56263 * 28.79540 * 22 16 15 24 24 H 1.08004 * 119.99451 * 4.93503 * 23 22 16 25 25 C 1.38804 * 120.00098 * 184.93353 * 23 22 16 26 26 N 1.31623 * 119.99810 * 5.12463 * 25 23 22 27 27 Si 1.86801 * 120.00203 * 185.12878 * 25 23 22 28 28 H 1.48496 * 109.47290 * 94.99698 * 27 25 23 29 29 H 1.48497 * 109.47232 * 214.99650 * 27 25 23 30 30 H 1.48505 * 109.46678 * 334.99747 * 27 25 23 31 31 H 1.09009 * 109.47063 * 294.69277 * 1 2 3 32 32 H 1.09001 * 109.46875 * 54.68775 * 1 2 3 33 33 H 1.09001 * 109.47528 * 174.69873 * 1 2 3 34 34 H 1.08999 * 109.46987 * 180.02562 * 3 2 1 35 35 H 1.09006 * 109.46535 * 299.99679 * 3 2 1 36 36 H 1.08998 * 109.47684 * 59.99756 * 3 2 1 37 37 H 1.09005 * 109.47070 * 305.14596 * 4 2 1 38 38 H 1.08998 * 109.47100 * 65.14640 * 4 2 1 39 39 H 1.08995 * 109.47274 * 185.15166 * 4 2 1 40 40 H 1.08001 * 125.38166 * 179.97438 * 7 6 5 41 41 H 1.09001 * 109.16231 * 247.90264 * 13 12 10 42 42 H 1.08996 * 109.16022 * 7.14559 * 13 12 10 43 43 H 1.08998 * 110.11668 * 288.96348 * 14 13 12 44 44 H 1.08998 * 108.48085 * 169.74926 * 14 13 12 45 45 H 1.08999 * 109.88589 * 182.60170 * 15 14 13 46 46 H 1.09001 * 109.89019 * 61.58456 * 15 14 13 47 47 H 1.08994 * 110.98560 * 325.11442 * 20 18 12 48 48 H 1.09001 * 110.98365 * 88.91987 * 20 18 12 49 49 H 1.09000 * 109.95878 * 141.98082 * 21 20 18 50 50 H 1.08995 * 109.96728 * 263.18604 * 21 20 18 51 51 H 0.97008 * 119.99857 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 2.0323 -0.7104 1.2306 6 8 2.7186 -0.1618 2.2456 7 6 2.9784 -1.1225 3.1437 8 7 2.4748 -2.2455 2.7273 9 6 1.8759 -2.0299 1.5246 10 6 1.1827 -3.0351 0.6987 11 8 -0.0325 -3.0514 0.6530 12 7 1.8957 -3.9362 -0.0057 13 6 3.3717 -3.8915 -0.0776 14 6 3.9721 -5.2317 0.3253 15 6 3.2999 -6.3893 -0.4335 16 6 1.8215 -6.3319 -0.1274 17 1 1.6891 -6.2879 0.9537 18 6 1.2629 -5.0197 -0.7470 19 1 1.4924 -4.9531 -1.8105 20 6 -0.2384 -5.2374 -0.5172 21 6 -0.3881 -6.7527 -0.8311 22 7 0.9484 -7.3594 -0.6614 23 6 1.2921 -8.6534 -0.9491 24 1 2.2797 -9.0166 -0.7057 25 6 0.3713 -9.4981 -1.5534 26 7 -0.7958 -9.0296 -1.9415 27 14 0.7884 -11.3000 -1.8157 28 1 0.2511 -12.1019 -0.6872 29 1 0.1827 -11.7682 -3.0881 30 1 2.2632 -11.4622 -1.8803 31 1 -0.3634 0.4293 0.9338 32 1 -0.3633 0.5940 -0.8386 33 1 -0.3634 -1.0233 -0.0949 34 1 3.1301 1.4423 -0.0005 35 1 1.6767 1.9562 -0.8901 36 1 1.6768 1.9563 0.8899 37 1 1.6033 -1.7190 -1.2963 38 1 1.7539 -0.1571 -2.1368 39 1 3.1260 -0.8020 -1.2043 40 1 3.5177 -0.9841 4.0691 41 1 3.6728 -3.6347 -1.0933 42 1 3.7403 -3.1289 0.6083 43 1 3.8506 -5.3900 1.3968 44 1 5.0356 -5.2196 0.0867 45 1 3.7113 -7.3411 -0.0976 46 1 3.4613 -6.2734 -1.5052 47 1 -0.5100 -5.0242 0.5166 48 1 -0.8301 -4.6355 -1.2068 49 1 -1.1018 -7.2064 -0.1434 50 1 -0.7244 -6.8883 -1.8590 51 1 -1.4395 -9.6200 -2.3636 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049834233.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:28:40 Heat of formation + Delta-G solvation = -1.875525 kcal Electronic energy + Delta-G solvation = -33139.800552 eV Core-core repulsion = 29040.872443 eV Total energy + Delta-G solvation = -4098.928109 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -44.48755 -41.68460 -39.38413 -37.91419 -37.04491 -35.80696 -34.28105 -33.87505 -31.28325 -30.41528 -29.77842 -28.31368 -28.26980 -26.76227 -26.30103 -24.53811 -23.85742 -22.90533 -22.53656 -21.59932 -20.89525 -20.24417 -18.82471 -18.22453 -17.84557 -17.21338 -17.04754 -16.78750 -16.58192 -15.98735 -15.87392 -15.54104 -15.46217 -15.16070 -14.99490 -14.84977 -14.58653 -14.34711 -14.06002 -13.91229 -13.52129 -13.28476 -13.16930 -13.12227 -12.92934 -12.74802 -12.67352 -12.64744 -12.49427 -12.26393 -12.08962 -12.06384 -11.99823 -11.95695 -11.82189 -11.73454 -11.63696 -11.54785 -11.48786 -10.81172 -10.69955 -9.91084 -9.64527 -8.92027 -7.81200 -5.22862 0.27444 1.20319 1.46115 1.48565 1.52902 1.56462 1.57445 1.92223 2.50215 3.08991 3.32838 3.35750 3.43790 3.65480 3.80941 3.84750 3.93769 3.95068 3.96760 4.04710 4.06609 4.19797 4.25495 4.49738 4.50934 4.53482 4.55072 4.58764 4.66102 4.71355 4.76539 4.78290 4.86995 4.91038 4.92403 4.96653 5.00477 5.05024 5.08635 5.15181 5.23448 5.24867 5.27867 5.35088 5.39866 5.46203 5.53236 5.60156 5.73526 6.19852 6.33488 6.54455 7.00635 7.05723 7.75294 8.43985 9.26631 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.020310 B = 0.003121 C = 0.002947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1378.307919 B = 8968.693317 C = 9497.762078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.014 3.986 3 C -0.135 4.135 4 C -0.144 4.144 5 C 0.028 3.972 6 O -0.190 6.190 7 C 0.194 3.806 8 N -0.500 5.500 9 C -0.076 4.076 10 C 0.607 3.393 11 O -0.554 6.554 12 N -0.583 5.583 13 C 0.115 3.885 14 C -0.117 4.117 15 C -0.108 4.108 16 C 0.154 3.846 17 H -0.007 1.007 18 C 0.134 3.866 19 H 0.089 0.911 20 C -0.109 4.109 21 C 0.176 3.824 22 N -0.609 5.609 23 C -0.235 4.235 24 H 0.087 0.913 25 C -0.067 4.067 26 N -0.951 5.951 27 Si 0.979 3.021 28 H -0.293 1.293 29 H -0.294 1.294 30 H -0.262 1.262 31 H 0.054 0.946 32 H 0.090 0.910 33 H 0.049 0.951 34 H 0.069 0.931 35 H 0.085 0.915 36 H 0.061 0.939 37 H 0.039 0.961 38 H 0.093 0.907 39 H 0.073 0.927 40 H 0.304 0.696 41 H 0.095 0.905 42 H 0.086 0.914 43 H 0.057 0.943 44 H 0.111 0.889 45 H 0.058 0.942 46 H 0.070 0.930 47 H 0.059 0.941 48 H 0.070 0.930 49 H -0.011 1.011 50 H 0.047 0.953 51 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.660 24.367 4.633 28.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.014 3.986 3 C -0.192 4.192 4 C -0.201 4.201 5 C -0.028 4.028 6 O -0.076 6.076 7 C -0.033 4.033 8 N -0.229 5.229 9 C -0.195 4.195 10 C 0.394 3.606 11 O -0.432 6.432 12 N -0.315 5.315 13 C -0.006 4.006 14 C -0.156 4.156 15 C -0.146 4.146 16 C 0.046 3.954 17 H 0.011 0.989 18 C 0.029 3.971 19 H 0.107 0.893 20 C -0.148 4.148 21 C 0.050 3.950 22 N -0.333 5.333 23 C -0.363 4.363 24 H 0.105 0.895 25 C -0.260 4.260 26 N -0.600 5.600 27 Si 0.807 3.193 28 H -0.220 1.220 29 H -0.220 1.220 30 H -0.187 1.187 31 H 0.073 0.927 32 H 0.109 0.891 33 H 0.068 0.932 34 H 0.088 0.912 35 H 0.104 0.896 36 H 0.080 0.920 37 H 0.058 0.942 38 H 0.112 0.888 39 H 0.092 0.908 40 H 0.319 0.681 41 H 0.113 0.887 42 H 0.105 0.895 43 H 0.075 0.925 44 H 0.129 0.871 45 H 0.077 0.923 46 H 0.089 0.911 47 H 0.077 0.923 48 H 0.089 0.911 49 H 0.008 0.992 50 H 0.065 0.935 51 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 12.984 23.622 4.849 27.388 hybrid contribution -0.722 -1.103 0.031 1.319 sum 12.262 22.519 4.880 26.101 Atomic orbital electron populations 1.22064 0.92470 1.03076 1.03021 1.19392 0.95817 0.96639 0.86777 1.21848 1.01934 0.91803 1.03651 1.22016 1.01972 0.99976 0.96166 1.23788 0.96303 0.91140 0.91589 1.84364 1.56110 1.40531 1.26592 1.29165 0.98601 0.79079 0.96490 1.70830 1.13171 1.29320 1.09624 1.21105 1.08162 0.94108 0.96111 1.17058 0.85706 0.79589 0.78278 1.90782 1.14444 1.72088 1.65887 1.47921 1.08382 1.27025 1.48174 1.21851 0.76822 0.98674 1.03270 1.21761 1.01227 0.92593 0.99970 1.21383 0.93393 0.98935 1.00930 1.20913 0.92666 0.87732 0.94065 0.98924 1.22069 0.94046 0.85675 0.95292 0.89302 1.22608 0.94961 0.95738 1.01447 1.21470 0.86326 0.88310 0.98872 1.44202 1.06258 1.07594 1.75263 1.19408 0.98800 0.86033 1.32088 0.89477 1.25693 0.96652 1.02697 1.00914 1.70159 1.08331 1.34932 1.46554 0.85051 0.78105 0.79619 0.76519 1.22021 1.22045 1.18655 0.92710 0.89138 0.93163 0.91211 0.89632 0.91982 0.94187 0.88839 0.90814 0.68131 0.88721 0.89541 0.92467 0.87104 0.92336 0.91125 0.92255 0.91083 0.99234 0.93475 0.94412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.13 8.34 71.98 0.60 -2.53 16 2 C 0.01 0.26 0.80 -52.93 -0.04 0.22 16 3 C -0.14 -1.59 8.07 71.98 0.58 -1.00 16 4 C -0.14 -2.48 8.18 71.98 0.59 -1.89 16 5 C 0.03 0.61 5.73 25.19 0.14 0.76 16 6 O -0.19 -3.32 10.20 0.43 0.00 -3.31 16 7 C 0.19 3.02 13.19 130.52 1.72 4.75 16 8 N -0.50 -12.99 11.25 -305.16 -3.43 -16.42 16 9 C -0.08 -2.14 4.84 40.40 0.20 -1.94 16 10 C 0.61 20.96 5.10 86.66 0.44 21.40 16 11 O -0.55 -22.90 12.17 -4.09 -0.05 -22.95 16 12 N -0.58 -18.93 2.63 -795.81 -2.09 -21.02 16 13 C 0.11 2.76 6.29 85.88 0.54 3.30 16 14 C -0.12 -2.92 5.93 30.65 0.18 -2.74 16 15 C -0.11 -3.67 5.44 30.26 0.16 -3.50 16 16 C 0.15 6.72 2.60 45.50 0.12 6.84 16 17 H -0.01 -0.32 8.06 -2.39 -0.02 -0.34 16 18 C 0.13 5.25 3.29 46.14 0.15 5.40 16 19 H 0.09 3.40 8.14 -2.39 -0.02 3.38 16 20 C -0.11 -4.95 4.98 31.59 0.16 -4.79 16 21 C 0.18 9.54 5.57 86.99 0.48 10.02 16 22 N -0.61 -32.70 3.32 -672.10 -2.23 -34.93 16 23 C -0.23 -13.30 9.91 84.03 0.83 -12.46 16 24 H 0.09 4.66 7.39 -2.91 -0.02 4.64 16 25 C -0.07 -3.86 5.47 84.86 0.46 -3.40 16 26 N -0.95 -58.71 10.46 21.65 0.23 -58.48 16 27 Si 0.98 46.43 29.56 68.60 2.03 48.45 16 28 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 29 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 30 H -0.26 -11.52 7.11 99.48 0.71 -10.82 16 31 H 0.05 1.15 8.14 -2.38 -0.02 1.13 16 32 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.05 1.44 5.63 -2.39 -0.01 1.42 16 34 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.08 0.73 8.14 -2.38 -0.02 0.71 16 36 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 37 H 0.04 0.93 6.05 -2.38 -0.01 0.91 16 38 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 40 H 0.30 0.91 8.06 -2.91 -0.02 0.88 16 41 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 42 H 0.09 1.89 6.41 -2.39 -0.02 1.87 16 43 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 44 H 0.11 1.96 8.14 -2.39 -0.02 1.94 16 45 H 0.06 2.08 7.75 -2.39 -0.02 2.06 16 46 H 0.07 2.32 8.12 -2.39 -0.02 2.30 16 47 H 0.06 2.89 6.43 -2.39 -0.02 2.87 16 48 H 0.07 3.07 8.14 -2.39 -0.02 3.05 16 49 H -0.01 -0.64 8.10 -2.39 -0.02 -0.66 16 50 H 0.05 2.79 6.69 -2.39 -0.02 2.77 16 51 H 0.25 14.79 8.31 -92.70 -0.77 14.02 16 Total: -1.00 -78.81 389.35 2.70 -76.11 By element: Atomic # 1 Polarization: 13.19 SS G_CDS: 0.92 Total: 14.11 kcal Atomic # 6 Polarization: 11.11 SS G_CDS: 7.33 Total: 18.44 kcal Atomic # 7 Polarization: -123.32 SS G_CDS: -7.53 Total: -130.85 kcal Atomic # 8 Polarization: -26.22 SS G_CDS: -0.05 Total: -26.26 kcal Atomic # 14 Polarization: 46.43 SS G_CDS: 2.03 Total: 48.45 kcal Total: -78.81 2.70 -76.11 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049834233.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.238 kcal (2) G-P(sol) polarization free energy of solvation -78.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds