Wall clock time and date at job start Wed Apr 1 2020 05:17:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.46886 * 2 1 4 4 C 1.50701 * 109.46768 * 179.97438 * 3 2 1 5 5 N 1.30621 * 125.42261 * 89.97966 * 4 3 2 6 6 C 1.33695 * 108.99495 * 179.97438 * 5 4 3 7 7 C 1.50696 * 126.26922 * 180.02562 * 6 5 4 8 8 C 1.36340 * 107.45311 * 0.02562 * 6 5 4 9 9 C 1.46719 * 126.64407 * 180.02562 * 8 6 5 10 10 O 1.21691 * 119.99780 * 353.14835 * 9 8 6 11 11 N 1.34771 * 120.00340 * 173.15084 * 9 8 6 12 12 C 1.43826 * 116.63089 * 174.18852 * 11 9 8 13 13 C 1.53049 * 109.27369 * 141.25937 * 12 11 9 14 14 C 1.52942 * 108.49376 * 53.48750 * 13 12 11 15 15 C 1.52928 * 109.79768 * 294.01326 * 14 13 12 16 16 H 1.08999 * 111.26443 * 293.35170 * 15 14 13 17 17 C 1.44189 * 117.76039 * 354.10237 * 11 9 8 18 18 H 1.09001 * 109.22558 * 332.63015 * 17 11 9 19 19 C 1.54065 * 111.76689 * 93.53105 * 17 11 9 20 20 C 1.54053 * 103.74254 * 152.60003 * 19 17 11 21 21 N 1.46886 * 107.70934 * 342.86750 * 20 19 17 22 22 C 1.36934 * 125.58170 * 177.00590 * 21 20 19 23 23 H 1.07998 * 120.00052 * 180.02562 * 22 21 20 24 24 C 1.38811 * 120.00117 * 0.02562 * 22 21 20 25 25 N 1.31622 * 120.00306 * 359.97438 * 24 22 21 26 26 Si 1.86801 * 120.00216 * 180.02562 * 24 22 21 27 27 H 1.48499 * 109.47295 * 179.97438 * 26 24 22 28 28 H 1.48502 * 109.46878 * 299.99826 * 26 24 22 29 29 H 1.48503 * 109.47285 * 59.99650 * 26 24 22 30 30 O 1.33663 * 125.42569 * 270.28156 * 4 3 2 31 31 H 1.08999 * 109.46893 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46667 * 299.99850 * 1 2 3 33 33 H 1.08996 * 109.47186 * 59.99883 * 1 2 3 34 34 H 1.08991 * 109.47103 * 239.99897 * 2 1 3 35 35 H 1.09007 * 109.47219 * 119.99631 * 2 1 3 36 36 H 1.09000 * 109.47507 * 60.00038 * 3 2 1 37 37 H 1.08996 * 109.47304 * 300.00044 * 3 2 1 38 38 H 1.08999 * 109.46975 * 269.95550 * 7 6 5 39 39 H 1.08996 * 109.47523 * 29.95710 * 7 6 5 40 40 H 1.09001 * 109.46866 * 149.96282 * 7 6 5 41 41 H 1.09001 * 109.85898 * 21.15891 * 12 11 9 42 42 H 1.08996 * 109.32185 * 261.03548 * 12 11 9 43 43 H 1.09003 * 109.63244 * 293.79119 * 13 12 11 44 44 H 1.09000 * 109.63515 * 173.18809 * 13 12 11 45 45 H 1.08995 * 109.41761 * 173.90583 * 14 13 12 46 46 H 1.09004 * 109.35923 * 54.07643 * 14 13 12 47 47 H 1.08994 * 110.56829 * 34.03445 * 19 17 11 48 48 H 1.09002 * 110.56626 * 271.16480 * 19 17 11 49 49 H 1.08997 * 109.81143 * 223.31710 * 20 19 17 50 50 H 1.09004 * 109.81103 * 102.41465 * 20 19 17 51 51 H 0.96998 * 120.00394 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 0.0006 5 7 4.3045 1.4419 -1.0635 6 6 5.5867 1.4427 -0.6848 7 6 6.7858 1.4429 -1.5976 8 6 5.6105 1.4431 0.6784 9 6 6.8029 1.4445 1.5333 10 8 7.9072 1.3196 1.0376 11 7 6.6752 1.5840 2.8677 12 6 7.8754 1.4464 3.6481 13 6 7.8586 2.4703 4.7855 14 6 6.5509 2.3109 5.5625 15 6 5.3690 2.6964 4.6719 16 1 5.3841 3.7599 4.4333 17 6 5.3600 1.8582 3.3915 18 1 4.7723 2.3755 2.6331 19 6 4.6287 0.5665 3.8041 20 6 3.6656 1.0297 4.9136 21 7 4.1257 2.3424 5.3853 22 6 3.5008 3.1142 6.3282 23 1 3.9198 4.0694 6.6083 24 6 2.3288 2.6689 6.9240 25 7 1.8179 1.5050 6.5823 26 14 1.4759 3.7220 8.2096 27 1 0.2537 3.0270 8.6874 28 1 2.3958 3.9490 9.3531 29 1 1.1000 5.0276 7.6101 30 8 4.3213 1.4373 1.0901 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8899 34 1 1.8933 -0.5138 -0.8899 35 1 1.8934 -0.5138 0.8901 36 1 1.6767 1.9564 0.8900 37 1 1.6766 1.9563 -0.8899 38 1 7.0758 0.4153 -1.8167 39 1 6.5354 1.9556 -2.5263 40 1 7.6135 1.9579 -1.1099 41 1 8.7483 1.6177 3.0182 42 1 7.9208 0.4406 4.0656 43 1 7.9189 3.4773 4.3727 44 1 8.7037 2.2928 5.4507 45 1 6.5696 2.9573 6.4398 46 1 6.4429 1.2735 5.8790 47 1 5.3357 -0.1667 4.1920 48 1 4.0728 0.1554 2.9614 49 1 3.6798 0.3155 5.7369 50 1 2.6550 1.1142 4.5141 51 1 0.9987 1.1940 6.9984 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049849396.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:17:18 Heat of formation + Delta-G solvation = 10.400617 kcal Electronic energy + Delta-G solvation = -32935.471980 eV Core-core repulsion = 28837.076204 eV Total energy + Delta-G solvation = -4098.395775 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -43.47647 -40.47518 -38.22357 -35.58618 -35.40825 -34.98794 -33.09252 -32.19628 -31.50051 -29.12573 -28.65176 -28.43358 -27.20321 -24.62587 -24.45095 -22.71792 -22.33712 -21.51453 -21.22285 -20.59423 -20.06000 -18.68850 -17.38798 -17.10661 -16.64557 -16.21465 -15.97632 -15.22313 -14.99607 -14.79827 -14.77143 -14.25653 -14.07814 -13.83547 -13.49361 -13.41152 -13.29520 -13.05948 -12.93997 -12.63593 -12.41230 -12.26092 -12.12068 -12.01171 -11.81911 -11.51046 -11.48084 -11.12882 -11.00044 -10.94878 -10.87307 -10.82767 -10.73691 -10.70171 -10.50440 -10.20283 -10.12970 -9.93306 -9.69707 -9.61630 -8.85928 -8.66290 -8.35265 -6.93999 -5.77956 -3.12835 0.84776 2.37620 2.43820 3.07172 3.17823 3.35879 3.40890 3.41454 3.81823 4.39069 4.51996 4.67562 4.80127 4.86173 4.95301 5.08730 5.18306 5.22831 5.29168 5.33057 5.43213 5.44641 5.48816 5.51946 5.54474 5.56785 5.62603 5.63222 5.73639 5.81182 5.83261 5.89467 5.98170 6.02667 6.03925 6.09247 6.14515 6.18630 6.24407 6.27557 6.30348 6.44817 6.50565 6.71405 6.82795 6.96999 7.34013 7.49309 7.54180 7.64114 7.75099 8.06885 8.17925 9.14137 9.73537 10.38055 11.32776 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009018 B = 0.004641 C = 0.003255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3104.307883 B = 6032.122742 C = 8600.862875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.120 4.120 3 C -0.030 4.030 4 C 0.221 3.779 5 N -0.492 5.492 6 C 0.076 3.924 7 C -0.075 4.075 8 C -0.117 4.117 9 C 0.598 3.402 10 O -0.527 6.527 11 N -0.571 5.571 12 C 0.112 3.888 13 C -0.132 4.132 14 C -0.130 4.130 15 C 0.162 3.838 16 H 0.055 0.945 17 C 0.126 3.874 18 H 0.095 0.905 19 C -0.150 4.150 20 C 0.182 3.818 21 N -0.594 5.594 22 C -0.229 4.229 23 H 0.078 0.922 24 C -0.004 4.004 25 N -0.920 5.920 26 Si 0.911 3.089 27 H -0.290 1.290 28 H -0.285 1.285 29 H -0.285 1.285 30 O -0.167 6.167 31 H 0.059 0.941 32 H 0.062 0.938 33 H 0.056 0.944 34 H 0.068 0.932 35 H 0.071 0.929 36 H 0.102 0.898 37 H 0.107 0.893 38 H 0.080 0.920 39 H 0.074 0.926 40 H 0.091 0.909 41 H 0.093 0.907 42 H 0.062 0.938 43 H 0.064 0.936 44 H 0.072 0.928 45 H 0.064 0.936 46 H 0.062 0.938 47 H 0.057 0.943 48 H 0.063 0.937 49 H 0.041 0.959 50 H 0.053 0.947 51 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.876 -1.945 -12.780 13.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.158 4.158 3 C -0.068 4.068 4 C 0.016 3.984 5 N -0.222 5.222 6 C -0.048 4.048 7 C -0.132 4.132 8 C -0.172 4.172 9 C 0.386 3.614 10 O -0.406 6.406 11 N -0.300 5.300 12 C -0.010 4.010 13 C -0.171 4.171 14 C -0.171 4.171 15 C 0.054 3.946 16 H 0.073 0.927 17 C 0.021 3.979 18 H 0.112 0.888 19 C -0.189 4.189 20 C 0.057 3.943 21 N -0.319 5.319 22 C -0.357 4.357 23 H 0.095 0.905 24 C -0.200 4.200 25 N -0.567 5.567 26 Si 0.742 3.258 27 H -0.216 1.216 28 H -0.212 1.212 29 H -0.211 1.211 30 O -0.053 6.053 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.075 0.925 34 H 0.087 0.913 35 H 0.090 0.910 36 H 0.120 0.880 37 H 0.125 0.875 38 H 0.098 0.902 39 H 0.093 0.907 40 H 0.109 0.891 41 H 0.111 0.889 42 H 0.080 0.920 43 H 0.083 0.917 44 H 0.090 0.910 45 H 0.083 0.917 46 H 0.081 0.919 47 H 0.076 0.924 48 H 0.081 0.919 49 H 0.059 0.941 50 H 0.071 0.929 51 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 4.950 -2.026 -13.346 14.378 hybrid contribution -0.388 0.441 1.550 1.658 sum 4.562 -1.586 -11.796 12.747 Atomic orbital electron populations 1.21745 0.94421 1.02305 1.02354 1.21518 0.96762 0.94368 1.03199 1.20338 0.80717 0.99995 1.05796 1.26638 0.96574 0.96113 0.79093 1.70334 1.01396 1.20429 1.30070 1.22006 0.93519 0.98101 0.91193 1.20307 0.92185 1.03488 0.97262 1.22812 0.82841 1.16666 0.94875 1.16661 0.85484 0.77348 0.81920 1.90798 1.24157 1.51885 1.73771 1.46559 1.09431 1.68492 1.05557 1.21105 0.86980 0.99436 0.93522 1.21873 0.99274 0.98931 0.96974 1.22117 0.93491 1.02357 0.99109 1.20860 0.88343 0.96153 0.89290 0.92682 1.21518 0.80683 0.97871 0.97786 0.88754 1.23053 0.99269 0.96314 1.00281 1.21040 0.94392 0.86681 0.92179 1.44487 1.23670 1.18657 1.45085 1.18962 1.04065 0.99671 1.13000 0.90463 1.24774 0.97938 0.97228 1.00082 1.69948 1.22113 1.19372 1.45287 0.86217 0.78949 0.79343 0.81337 1.21577 1.21165 1.21150 1.84848 1.15947 1.68574 1.35953 0.92185 0.91879 0.92498 0.91291 0.90997 0.87960 0.87523 0.90173 0.90713 0.89051 0.88868 0.92013 0.91717 0.90959 0.91683 0.91891 0.92421 0.91868 0.94110 0.92886 0.93651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 9.91 37.16 0.37 -0.93 16 2 C -0.12 -1.21 5.92 -26.73 -0.16 -1.37 16 3 C -0.03 -0.33 5.84 -27.88 -0.16 -0.49 16 4 C 0.22 3.14 7.57 -12.79 -0.10 3.04 16 5 N -0.49 -7.35 11.26 -7.07 -0.08 -7.43 16 6 C 0.08 1.15 7.16 -82.47 -0.59 0.56 16 7 C -0.08 -0.92 9.81 36.00 0.35 -0.56 16 8 C -0.12 -1.89 6.62 -36.84 -0.24 -2.14 16 9 C 0.60 9.90 7.52 -12.84 -0.10 9.81 16 10 O -0.53 -9.03 13.97 5.20 0.07 -8.96 16 11 N -0.57 -9.24 2.75 -170.67 -0.47 -9.71 16 12 C 0.11 1.60 6.20 -5.44 -0.03 1.56 16 13 C -0.13 -1.82 6.10 -26.74 -0.16 -1.99 16 14 C -0.13 -2.27 5.31 -26.80 -0.14 -2.41 16 15 C 0.16 3.18 3.29 -67.32 -0.22 2.96 16 16 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 17 C 0.13 2.24 2.27 -68.58 -0.16 2.08 16 18 H 0.09 1.76 5.12 -51.93 -0.27 1.50 16 19 C -0.15 -2.80 6.21 -25.63 -0.16 -2.96 16 20 C 0.18 4.20 5.39 -3.28 -0.02 4.18 16 21 N -0.59 -14.19 2.94 -163.87 -0.48 -14.67 16 22 C -0.23 -6.03 10.27 -15.06 -0.15 -6.18 16 23 H 0.08 1.97 7.83 -52.49 -0.41 1.56 16 24 C 0.00 -0.10 5.49 -17.43 -0.10 -0.19 16 25 N -0.92 -25.73 10.29 55.49 0.57 -25.16 16 26 Si 0.91 21.30 29.55 -169.99 -5.02 16.28 16 27 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 28 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 29 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 30 O -0.17 -2.67 5.96 4.43 0.03 -2.64 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.11 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 39 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 40 H 0.09 1.15 6.63 -51.93 -0.34 0.81 16 41 H 0.09 1.28 6.79 -51.93 -0.35 0.93 16 42 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 43 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 44 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 45 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 46 H 0.06 1.18 8.02 -51.93 -0.42 0.76 16 47 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 48 H 0.06 1.13 6.74 -51.93 -0.35 0.78 16 49 H 0.04 1.05 7.60 -51.93 -0.39 0.66 16 50 H 0.05 1.35 7.25 -51.93 -0.38 0.97 16 51 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 LS Contribution 395.32 15.07 5.96 5.96 Total: -1.00 -29.74 395.32 -9.58 -39.33 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: -8.39 Total: 2.04 kcal Atomic # 6 Polarization: 6.74 SS G_CDS: -1.77 Total: 4.97 kcal Atomic # 7 Polarization: -56.51 SS G_CDS: -0.46 Total: -56.97 kcal Atomic # 8 Polarization: -11.70 SS G_CDS: 0.10 Total: -11.60 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -29.74 -9.58 -39.33 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049849396.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.728 kcal (2) G-P(sol) polarization free energy of solvation -29.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.327 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds