Wall clock time and date at job start Wed Apr 1 2020 05:17:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.46886 * 2 1 4 4 C 1.50701 * 109.46768 * 179.97438 * 3 2 1 5 5 N 1.30621 * 125.42261 * 89.97966 * 4 3 2 6 6 C 1.33695 * 108.99495 * 179.97438 * 5 4 3 7 7 C 1.50696 * 126.26922 * 180.02562 * 6 5 4 8 8 C 1.36340 * 107.45311 * 0.02562 * 6 5 4 9 9 C 1.46719 * 126.64407 * 180.02562 * 8 6 5 10 10 O 1.21691 * 119.99780 * 353.14835 * 9 8 6 11 11 N 1.34771 * 120.00340 * 173.15084 * 9 8 6 12 12 C 1.43826 * 116.63089 * 174.18852 * 11 9 8 13 13 C 1.53049 * 109.27369 * 141.25937 * 12 11 9 14 14 C 1.52942 * 108.49376 * 53.48750 * 13 12 11 15 15 C 1.52928 * 109.79768 * 294.01326 * 14 13 12 16 16 H 1.08999 * 111.26443 * 293.35170 * 15 14 13 17 17 C 1.44189 * 117.76039 * 354.10237 * 11 9 8 18 18 H 1.09001 * 109.22558 * 332.63015 * 17 11 9 19 19 C 1.54065 * 111.76689 * 93.53105 * 17 11 9 20 20 C 1.54053 * 103.74254 * 152.60003 * 19 17 11 21 21 N 1.46886 * 107.70934 * 342.86750 * 20 19 17 22 22 C 1.36934 * 125.58170 * 177.00590 * 21 20 19 23 23 H 1.07998 * 120.00052 * 180.02562 * 22 21 20 24 24 C 1.38811 * 120.00117 * 0.02562 * 22 21 20 25 25 N 1.31622 * 120.00306 * 359.97438 * 24 22 21 26 26 Si 1.86801 * 120.00216 * 180.02562 * 24 22 21 27 27 H 1.48499 * 109.47295 * 179.97438 * 26 24 22 28 28 H 1.48502 * 109.46878 * 299.99826 * 26 24 22 29 29 H 1.48503 * 109.47285 * 59.99650 * 26 24 22 30 30 O 1.33663 * 125.42569 * 270.28156 * 4 3 2 31 31 H 1.08999 * 109.46893 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46667 * 299.99850 * 1 2 3 33 33 H 1.08996 * 109.47186 * 59.99883 * 1 2 3 34 34 H 1.08991 * 109.47103 * 239.99897 * 2 1 3 35 35 H 1.09007 * 109.47219 * 119.99631 * 2 1 3 36 36 H 1.09000 * 109.47507 * 60.00038 * 3 2 1 37 37 H 1.08996 * 109.47304 * 300.00044 * 3 2 1 38 38 H 1.08999 * 109.46975 * 269.95550 * 7 6 5 39 39 H 1.08996 * 109.47523 * 29.95710 * 7 6 5 40 40 H 1.09001 * 109.46866 * 149.96282 * 7 6 5 41 41 H 1.09001 * 109.85898 * 21.15891 * 12 11 9 42 42 H 1.08996 * 109.32185 * 261.03548 * 12 11 9 43 43 H 1.09003 * 109.63244 * 293.79119 * 13 12 11 44 44 H 1.09000 * 109.63515 * 173.18809 * 13 12 11 45 45 H 1.08995 * 109.41761 * 173.90583 * 14 13 12 46 46 H 1.09004 * 109.35923 * 54.07643 * 14 13 12 47 47 H 1.08994 * 110.56829 * 34.03445 * 19 17 11 48 48 H 1.09002 * 110.56626 * 271.16480 * 19 17 11 49 49 H 1.08997 * 109.81143 * 223.31710 * 20 19 17 50 50 H 1.09004 * 109.81103 * 102.41465 * 20 19 17 51 51 H 0.96998 * 120.00394 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 0.0006 5 7 4.3045 1.4419 -1.0635 6 6 5.5867 1.4427 -0.6848 7 6 6.7858 1.4429 -1.5976 8 6 5.6105 1.4431 0.6784 9 6 6.8029 1.4445 1.5333 10 8 7.9072 1.3196 1.0376 11 7 6.6752 1.5840 2.8677 12 6 7.8754 1.4464 3.6481 13 6 7.8586 2.4703 4.7855 14 6 6.5509 2.3109 5.5625 15 6 5.3690 2.6964 4.6719 16 1 5.3841 3.7599 4.4333 17 6 5.3600 1.8582 3.3915 18 1 4.7723 2.3755 2.6331 19 6 4.6287 0.5665 3.8041 20 6 3.6656 1.0297 4.9136 21 7 4.1257 2.3424 5.3853 22 6 3.5008 3.1142 6.3282 23 1 3.9198 4.0694 6.6083 24 6 2.3288 2.6689 6.9240 25 7 1.8179 1.5050 6.5823 26 14 1.4759 3.7220 8.2096 27 1 0.2537 3.0270 8.6874 28 1 2.3958 3.9490 9.3531 29 1 1.1000 5.0276 7.6101 30 8 4.3213 1.4373 1.0901 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8899 34 1 1.8933 -0.5138 -0.8899 35 1 1.8934 -0.5138 0.8901 36 1 1.6767 1.9564 0.8900 37 1 1.6766 1.9563 -0.8899 38 1 7.0758 0.4153 -1.8167 39 1 6.5354 1.9556 -2.5263 40 1 7.6135 1.9579 -1.1099 41 1 8.7483 1.6177 3.0182 42 1 7.9208 0.4406 4.0656 43 1 7.9189 3.4773 4.3727 44 1 8.7037 2.2928 5.4507 45 1 6.5696 2.9573 6.4398 46 1 6.4429 1.2735 5.8790 47 1 5.3357 -0.1667 4.1920 48 1 4.0728 0.1554 2.9614 49 1 3.6798 0.3155 5.7369 50 1 2.6550 1.1142 4.5141 51 1 0.9987 1.1940 6.9984 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049849396.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:17:17 Heat of formation + Delta-G solvation = -6.741233 kcal Electronic energy + Delta-G solvation = -32936.215306 eV Core-core repulsion = 28837.076204 eV Total energy + Delta-G solvation = -4099.139102 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -44.63904 -41.83475 -39.69214 -36.94154 -36.50548 -36.13057 -34.44161 -34.04561 -32.56569 -30.88055 -30.16002 -29.41153 -28.33790 -26.46632 -25.81451 -23.85451 -23.53770 -22.84411 -22.23712 -21.99678 -21.63898 -20.00378 -19.05195 -18.51366 -17.94297 -17.47892 -17.23438 -16.76144 -16.24293 -16.19114 -16.04558 -15.69626 -15.36507 -15.18616 -14.90441 -14.45947 -14.42012 -14.26270 -14.16825 -14.06990 -13.82529 -13.54304 -13.29423 -13.16847 -13.10814 -12.82526 -12.68179 -12.64932 -12.41491 -12.36073 -12.32985 -12.13166 -12.03574 -11.96639 -11.87025 -11.65956 -11.61515 -11.52918 -11.34651 -11.10831 -10.67663 -10.06557 -9.64648 -8.90554 -7.82595 -5.18977 -0.33794 1.22915 1.29532 1.48297 1.50025 1.56252 1.81895 1.91986 2.50203 2.75926 3.24128 3.34459 3.58634 3.61457 3.70634 3.78932 3.95436 3.97299 4.00737 4.02124 4.10476 4.12145 4.31554 4.40783 4.48739 4.53449 4.55771 4.62064 4.65024 4.67805 4.69287 4.74047 4.79838 4.86471 4.87834 4.91189 4.97928 4.98975 5.09571 5.15899 5.22720 5.28817 5.29835 5.41573 5.42803 5.50768 5.53956 5.62233 5.74766 6.01604 6.20035 6.47450 6.79755 7.10872 7.76344 8.40236 9.26774 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009018 B = 0.004641 C = 0.003255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3104.307883 B = 6032.122742 C = 8600.862875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.115 4.115 3 C -0.030 4.030 4 C 0.225 3.775 5 N -0.502 5.502 6 C 0.080 3.920 7 C -0.073 4.073 8 C -0.146 4.146 9 C 0.600 3.400 10 O -0.533 6.533 11 N -0.572 5.572 12 C 0.109 3.891 13 C -0.119 4.119 14 C -0.121 4.121 15 C 0.156 3.844 16 H 0.052 0.948 17 C 0.145 3.855 18 H 0.088 0.912 19 C -0.132 4.132 20 C 0.197 3.803 21 N -0.612 5.612 22 C -0.237 4.237 23 H 0.082 0.918 24 C -0.057 4.057 25 N -0.948 5.948 26 Si 0.973 3.027 27 H -0.296 1.296 28 H -0.279 1.279 29 H -0.278 1.278 30 O -0.182 6.182 31 H 0.065 0.935 32 H 0.054 0.946 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.054 0.946 36 H 0.100 0.900 37 H 0.130 0.870 38 H 0.091 0.909 39 H 0.092 0.908 40 H 0.087 0.913 41 H 0.105 0.895 42 H 0.068 0.932 43 H 0.070 0.930 44 H 0.102 0.898 45 H 0.055 0.945 46 H 0.048 0.952 47 H 0.064 0.936 48 H 0.071 0.929 49 H 0.006 0.994 50 H 0.022 0.978 51 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.946 -1.354 -13.953 15.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.154 4.154 3 C -0.068 4.068 4 C 0.020 3.980 5 N -0.232 5.232 6 C -0.045 4.045 7 C -0.130 4.130 8 C -0.200 4.200 9 C 0.389 3.611 10 O -0.413 6.413 11 N -0.301 5.301 12 C -0.013 4.013 13 C -0.157 4.157 14 C -0.161 4.161 15 C 0.049 3.951 16 H 0.070 0.930 17 C 0.040 3.960 18 H 0.106 0.894 19 C -0.172 4.172 20 C 0.071 3.929 21 N -0.336 5.336 22 C -0.366 4.366 23 H 0.100 0.900 24 C -0.251 4.251 25 N -0.596 5.596 26 Si 0.802 3.198 27 H -0.222 1.222 28 H -0.206 1.206 29 H -0.204 1.204 30 O -0.070 6.070 31 H 0.084 0.916 32 H 0.073 0.927 33 H 0.092 0.908 34 H 0.091 0.909 35 H 0.072 0.928 36 H 0.118 0.882 37 H 0.148 0.852 38 H 0.110 0.890 39 H 0.110 0.890 40 H 0.105 0.895 41 H 0.123 0.877 42 H 0.087 0.913 43 H 0.089 0.911 44 H 0.120 0.880 45 H 0.074 0.926 46 H 0.067 0.933 47 H 0.082 0.918 48 H 0.089 0.911 49 H 0.024 0.976 50 H 0.040 0.960 51 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 6.071 -1.420 -14.536 15.817 hybrid contribution -0.729 0.263 1.847 2.003 sum 5.342 -1.158 -12.689 13.816 Atomic orbital electron populations 1.21726 0.93137 1.02853 1.02765 1.21477 0.97778 0.93605 1.02506 1.20564 0.78733 1.00733 1.06777 1.27364 0.97615 0.94421 0.78588 1.70388 1.01470 1.21228 1.30162 1.22502 0.94322 0.96389 0.91262 1.20393 0.90855 1.04370 0.97343 1.22850 0.82871 1.18908 0.95402 1.16677 0.85589 0.76994 0.81864 1.90787 1.24415 1.52278 1.73800 1.46524 1.09141 1.68699 1.05785 1.21278 0.86444 0.99955 0.93585 1.21804 0.97951 0.99180 0.96763 1.21931 0.94504 1.01031 0.98678 1.21056 0.87556 0.96337 0.90158 0.92964 1.21120 0.81619 0.96557 0.96683 0.89422 1.22832 0.98526 0.96914 0.98884 1.20691 0.94123 0.86006 0.92050 1.44688 1.25139 1.18693 1.45120 1.19307 1.04151 0.99983 1.13171 0.90039 1.25529 0.98852 0.98443 1.02255 1.70154 1.22203 1.20858 1.46397 0.85238 0.77562 0.77913 0.79112 1.22174 1.20559 1.20383 1.84817 1.16229 1.69090 1.36840 0.91614 0.92702 0.90826 0.90892 0.92753 0.88195 0.85232 0.89010 0.88970 0.89475 0.87710 0.91347 0.91150 0.88004 0.92598 0.93335 0.91753 0.91054 0.97598 0.95985 0.94386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.39 9.91 71.98 0.71 -1.67 16 2 C -0.12 -2.24 5.92 30.60 0.18 -2.06 16 3 C -0.03 -0.63 5.84 29.85 0.17 -0.45 16 4 C 0.22 6.22 7.57 88.29 0.67 6.89 16 5 N -0.50 -14.34 11.26 -291.06 -3.28 -17.62 16 6 C 0.08 2.30 7.16 41.83 0.30 2.60 16 7 C -0.07 -1.63 9.81 71.23 0.70 -0.93 16 8 C -0.15 -4.60 6.62 24.04 0.16 -4.44 16 9 C 0.60 19.09 7.52 86.46 0.65 19.74 16 10 O -0.53 -17.31 13.97 -4.32 -0.06 -17.37 16 11 N -0.57 -17.77 2.75 -812.11 -2.23 -20.00 16 12 C 0.11 2.86 6.20 86.89 0.54 3.40 16 13 C -0.12 -2.98 6.10 30.59 0.19 -2.80 16 14 C -0.12 -4.13 5.31 30.55 0.16 -3.96 16 15 C 0.16 6.13 3.29 44.76 0.15 6.27 16 16 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 17 C 0.15 5.14 2.27 45.79 0.10 5.24 16 18 H 0.09 3.28 5.12 -2.39 -0.01 3.27 16 19 C -0.13 -5.00 6.21 31.31 0.19 -4.81 16 20 C 0.20 9.45 5.39 86.66 0.47 9.92 16 21 N -0.61 -29.89 2.94 -672.35 -1.97 -31.86 16 22 C -0.24 -12.71 10.27 84.03 0.86 -11.85 16 23 H 0.08 4.18 7.83 -2.91 -0.02 4.16 16 24 C -0.06 -3.14 5.49 84.86 0.47 -2.67 16 25 N -0.95 -54.86 10.29 21.65 0.22 -54.64 16 26 Si 0.97 44.34 29.55 68.60 2.03 46.37 16 27 H -0.30 -13.62 7.11 99.48 0.71 -12.92 16 28 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 29 H -0.28 -12.22 7.11 99.48 0.71 -11.52 16 30 O -0.18 -5.80 5.96 -7.06 -0.04 -5.84 16 31 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.05 1.24 8.14 -2.38 -0.02 1.22 16 36 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 37 H 0.13 2.09 8.14 -2.39 -0.02 2.07 16 38 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 39 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 40 H 0.09 2.05 6.63 -2.39 -0.02 2.03 16 41 H 0.10 2.59 6.79 -2.39 -0.02 2.57 16 42 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 43 H 0.07 1.73 8.14 -2.39 -0.02 1.72 16 44 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 45 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 46 H 0.05 1.79 8.02 -2.38 -0.02 1.77 16 47 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 48 H 0.07 2.59 6.74 -2.39 -0.02 2.57 16 49 H 0.01 0.32 7.60 -2.39 -0.02 0.30 16 50 H 0.02 1.18 7.25 -2.38 -0.02 1.16 16 51 H 0.25 14.01 8.31 -92.71 -0.77 13.24 16 Total: -1.00 -64.87 395.32 2.26 -62.61 By element: Atomic # 1 Polarization: 19.01 SS G_CDS: 0.92 Total: 19.93 kcal Atomic # 6 Polarization: 11.75 SS G_CDS: 6.67 Total: 18.42 kcal Atomic # 7 Polarization: -116.86 SS G_CDS: -7.26 Total: -124.12 kcal Atomic # 8 Polarization: -23.11 SS G_CDS: -0.10 Total: -23.21 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.37 kcal Total: -64.87 2.26 -62.61 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049849396.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.872 kcal (2) G-P(sol) polarization free energy of solvation -64.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds