Wall clock time and date at job start Wed Apr 1 2020 05:25:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.46839 * 2 1 4 4 C 1.53003 * 109.47261 * 239.99778 * 2 1 3 5 5 C 1.50699 * 109.47243 * 119.99687 * 2 1 3 6 6 C 1.35322 * 126.66266 * 60.28764 * 5 2 1 7 7 C 1.42276 * 103.91784 * 180.08936 * 6 5 2 8 8 C 1.48328 * 126.93586 * 179.90670 * 7 6 5 9 9 O 1.21494 * 119.99938 * 359.71204 * 8 7 6 10 10 N 1.34779 * 119.99897 * 179.70918 * 8 7 6 11 11 C 1.47666 * 134.45457 * 180.02562 * 10 8 7 12 12 C 1.53507 * 85.97733 * 204.29375 * 11 10 8 13 13 C 1.47658 * 134.45776 * 359.97309 * 10 8 7 14 14 C 1.52671 * 113.57136 * 91.01766 * 12 11 10 15 15 C 1.53339 * 109.11340 * 73.81443 * 14 12 11 16 16 N 1.46880 * 108.76370 * 52.40568 * 15 14 12 17 17 C 1.36938 * 120.46673 * 124.47322 * 16 15 14 18 18 H 1.07997 * 119.99685 * 331.56821 * 17 16 15 19 19 C 1.38811 * 119.99675 * 151.85026 * 17 16 15 20 20 N 1.31620 * 120.00000 * 342.21286 * 19 17 16 21 21 Si 1.86798 * 119.99732 * 162.22326 * 19 17 16 22 22 H 1.48502 * 109.47144 * 359.97438 * 21 19 17 23 23 H 1.48508 * 109.47161 * 119.99268 * 21 19 17 24 24 H 1.48495 * 109.46988 * 239.99359 * 21 19 17 25 25 C 1.46884 * 119.06727 * 304.74569 * 16 15 14 26 26 C 1.52671 * 113.56548 * 222.23317 * 12 11 10 27 27 N 1.30980 * 106.12381 * 359.64751 * 7 6 5 28 28 O 1.20902 * 111.44340 * 0.22861 * 27 7 6 29 29 H 1.08998 * 109.47007 * 299.99751 * 1 2 3 30 30 H 1.08997 * 109.46949 * 60.00346 * 1 2 3 31 31 H 1.09003 * 109.46625 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.46930 * 179.97438 * 3 2 1 33 33 H 1.08997 * 109.47068 * 299.99582 * 3 2 1 34 34 H 1.08999 * 109.47630 * 60.00200 * 3 2 1 35 35 H 1.08994 * 109.46980 * 300.00305 * 4 2 1 36 36 H 1.09000 * 109.46636 * 59.99632 * 4 2 1 37 37 H 1.08996 * 109.47314 * 179.97438 * 4 2 1 38 38 H 1.08001 * 128.04006 * 359.96526 * 6 5 2 39 39 H 1.09004 * 113.78724 * 90.03029 * 11 10 8 40 40 H 1.08996 * 113.79661 * 318.56408 * 11 10 8 41 41 H 1.09000 * 113.79135 * 41.43645 * 13 10 8 42 42 H 1.08998 * 113.79502 * 269.97069 * 13 10 8 43 43 H 1.09004 * 109.53427 * 313.92810 * 14 12 11 44 44 H 1.08997 * 109.59088 * 193.74073 * 14 12 11 45 45 H 1.09001 * 109.58424 * 292.62241 * 15 14 12 46 46 H 1.08998 * 109.58774 * 172.19141 * 15 14 12 47 47 H 0.96999 * 119.99617 * 180.02562 * 20 19 17 48 48 H 1.09001 * 109.58970 * 175.03802 * 25 16 15 49 49 H 1.08997 * 109.59051 * 295.47717 * 25 16 15 50 50 H 1.08998 * 109.53427 * 46.07952 * 26 12 11 51 51 H 1.08999 * 109.53115 * 166.22346 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 2.0324 -0.7103 1.2305 6 6 1.7945 -1.9974 1.5742 7 6 2.4872 -2.1560 2.8068 8 6 2.5618 -3.3838 3.6357 9 8 1.9869 -4.3931 3.2794 10 7 3.2674 -3.3798 4.7840 11 6 3.5518 -4.3861 5.8266 12 6 3.7765 -3.1923 6.7651 13 6 4.0665 -2.3677 5.5033 14 6 2.5165 -2.7533 7.5070 15 6 2.1991 -3.7749 8.6055 16 7 3.3993 -3.9716 9.4290 17 6 3.3499 -3.7834 10.7845 18 1 2.6414 -3.0865 11.2074 19 6 4.2144 -4.4839 11.6144 20 7 4.8258 -5.5611 11.1690 21 14 4.5097 -3.8981 13.3634 22 1 3.7095 -2.6731 13.6169 23 1 4.1033 -4.9615 14.3169 24 1 5.9516 -3.5936 13.5465 25 6 4.6549 -4.3671 8.7773 26 6 4.9872 -3.3553 7.6808 27 7 3.0503 -1.0007 3.0589 28 8 2.8063 -0.1919 2.1940 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9564 0.8900 35 1 1.6767 -1.7489 -1.2492 36 1 1.6767 -0.2075 -2.1392 37 1 3.1301 -0.7209 -1.2495 38 1 1.2123 -2.7326 1.0385 39 1 4.4511 -4.9726 5.6379 40 1 2.6906 -4.9989 6.0930 41 1 3.6144 -1.3759 5.5126 42 1 5.1186 -2.3546 5.2187 43 1 1.6821 -2.6991 6.8078 44 1 2.6796 -1.7738 7.9565 45 1 1.9086 -4.7220 8.1508 46 1 1.3860 -3.4014 9.2280 47 1 5.4296 -6.0508 11.7491 48 1 5.4591 -4.3836 9.5130 49 1 4.5411 -5.3568 8.3349 50 1 5.8381 -3.7114 7.1001 51 1 5.2324 -2.3953 8.1350 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050589438.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:25:24 Heat of formation + Delta-G solvation = 74.478542 kcal Electronic energy + Delta-G solvation = -31121.094801 eV Core-core repulsion = 27025.477652 eV Total energy + Delta-G solvation = -4095.617148 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -45.28776 -40.63760 -38.34303 -37.78972 -35.87578 -34.11324 -32.48803 -31.23954 -30.59593 -29.77518 -27.96916 -27.80805 -27.31499 -26.37440 -24.48464 -23.68146 -23.42875 -22.36227 -21.40610 -20.66104 -18.67215 -18.05215 -17.96369 -17.50694 -16.90400 -16.34472 -15.85395 -15.54657 -15.10862 -14.85112 -14.58489 -14.51055 -14.06447 -13.94492 -13.80961 -13.58999 -13.50616 -13.05737 -12.88109 -12.82232 -12.67472 -12.30802 -12.18802 -12.08933 -11.88024 -11.70952 -11.60395 -11.57043 -11.42865 -11.34485 -11.08284 -10.74608 -10.61567 -10.49534 -10.40256 -10.17197 -10.08247 -9.84906 -9.69406 -9.63485 -9.38633 -8.63630 -8.46429 -6.66871 -5.79808 -3.22176 0.97504 1.47204 2.58746 2.72414 3.14005 3.36607 3.45000 3.47094 3.75244 3.96204 4.32914 4.36438 4.48525 4.50283 4.61547 4.76620 4.90894 5.01942 5.09199 5.10375 5.18670 5.19081 5.26086 5.35881 5.37071 5.38110 5.43156 5.51187 5.55540 5.58614 5.60942 5.65609 5.67973 5.75198 5.79772 5.87651 5.90530 6.06587 6.08316 6.26373 6.45501 6.56063 6.60833 6.65774 6.80896 6.94836 7.31908 7.63112 7.66099 7.77285 7.79836 8.07824 8.45111 9.20894 9.84292 10.40590 11.28497 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.027499 B = 0.002094 C = 0.002049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.970245 B =13368.592994 C =13661.150429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.016 3.984 3 C -0.148 4.148 4 C -0.142 4.142 5 C -0.025 4.025 6 C -0.180 4.180 7 C -0.015 4.015 8 C 0.613 3.387 9 O -0.532 6.532 10 N -0.624 5.624 11 C 0.121 3.879 12 C -0.075 4.075 13 C 0.108 3.892 14 C -0.108 4.108 15 C 0.147 3.853 16 N -0.590 5.590 17 C -0.251 4.251 18 H 0.065 0.935 19 C 0.002 3.998 20 N -0.901 5.901 21 Si 0.901 3.099 22 H -0.278 1.278 23 H -0.291 1.291 24 H -0.289 1.289 25 C 0.170 3.830 26 C -0.126 4.126 27 N -0.328 5.328 28 O 0.123 5.877 29 H 0.062 0.938 30 H 0.071 0.929 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.068 0.932 34 H 0.064 0.936 35 H 0.063 0.937 36 H 0.071 0.929 37 H 0.062 0.938 38 H 0.178 0.822 39 H 0.088 0.912 40 H 0.086 0.914 41 H 0.084 0.916 42 H 0.085 0.915 43 H 0.050 0.950 44 H 0.065 0.935 45 H 0.019 0.981 46 H 0.056 0.944 47 H 0.253 0.747 48 H 0.090 0.910 49 H 0.018 0.982 50 H 0.054 0.946 51 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.275 12.589 -24.736 28.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.015 3.985 3 C -0.205 4.205 4 C -0.199 4.199 5 C -0.088 4.088 6 C -0.202 4.202 7 C -0.174 4.174 8 C 0.400 3.600 9 O -0.408 6.408 10 N -0.359 5.359 11 C 0.000 4.000 12 C -0.076 4.076 13 C -0.014 4.014 14 C -0.147 4.147 15 C 0.021 3.979 16 N -0.313 5.313 17 C -0.381 4.381 18 H 0.083 0.917 19 C -0.197 4.197 20 N -0.546 5.546 21 Si 0.731 3.269 22 H -0.203 1.203 23 H -0.218 1.218 24 H -0.216 1.216 25 C 0.045 3.955 26 C -0.166 4.166 27 N -0.028 5.028 28 O 0.048 5.952 29 H 0.082 0.918 30 H 0.090 0.910 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.087 0.913 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.090 0.910 37 H 0.081 0.919 38 H 0.195 0.805 39 H 0.106 0.894 40 H 0.104 0.896 41 H 0.102 0.898 42 H 0.103 0.897 43 H 0.069 0.931 44 H 0.084 0.916 45 H 0.037 0.963 46 H 0.074 0.926 47 H 0.063 0.937 48 H 0.108 0.892 49 H 0.036 0.964 50 H 0.072 0.928 51 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -3.822 12.310 -23.950 27.198 hybrid contribution -0.160 -0.268 0.342 0.463 sum -3.982 12.043 -23.608 26.800 Atomic orbital electron populations 1.21957 0.91969 1.03063 1.02980 1.19196 0.96150 0.95347 0.87816 1.21914 1.01960 0.93650 1.02994 1.21953 1.01818 1.00680 0.95478 1.24435 0.96813 0.93542 0.94030 1.22333 1.04755 0.96796 0.96344 1.23481 1.01821 0.94410 0.97738 1.16500 0.79669 0.85085 0.78781 1.90789 1.46865 1.32763 1.70350 1.49963 1.48197 1.17431 1.20259 1.23388 1.01336 0.93068 0.82177 1.22007 0.98452 0.94117 0.92977 1.23535 0.95439 0.93882 0.88546 1.21767 0.94288 1.00770 0.97873 1.20885 0.90608 0.94819 0.91633 1.44012 1.03670 1.80477 1.03125 1.19217 1.19384 1.17707 0.81773 0.91723 1.25039 1.01480 0.95378 0.97771 1.70043 1.32387 1.16062 1.36073 0.86252 0.77755 0.78193 0.84748 1.20276 1.21774 1.21568 1.20689 0.90300 0.92074 0.92485 1.22061 0.94108 1.02478 0.97964 1.74249 1.18360 1.00367 1.09821 1.84792 1.50886 1.35368 1.24198 0.91842 0.90962 0.91736 0.91699 0.91292 0.91652 0.91745 0.90967 0.91902 0.80500 0.89412 0.89570 0.89776 0.89705 0.93129 0.91639 0.96342 0.92590 0.93689 0.89164 0.96351 0.92764 0.91840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.71 8.36 37.16 0.31 -0.40 16 2 C 0.02 0.10 0.94 -155.66 -0.15 -0.05 16 3 C -0.15 -0.74 8.07 37.16 0.30 -0.44 16 4 C -0.14 -0.69 8.36 37.16 0.31 -0.38 16 5 C -0.03 -0.23 5.76 -35.35 -0.20 -0.44 16 6 C -0.18 -2.01 10.40 -39.07 -0.41 -2.42 16 7 C -0.02 -0.22 7.14 -82.53 -0.59 -0.81 16 8 C 0.61 10.26 8.08 -12.11 -0.10 10.16 16 9 O -0.53 -10.24 17.68 5.37 0.09 -10.14 16 10 N -0.62 -9.92 3.44 -181.18 -0.62 -10.55 16 11 C 0.12 1.96 7.62 -3.15 -0.02 1.94 16 12 C -0.07 -1.21 0.77 -154.42 -0.12 -1.33 16 13 C 0.11 1.55 7.07 -3.16 -0.02 1.53 16 14 C -0.11 -1.87 5.22 -26.72 -0.14 -2.01 16 15 C 0.15 3.05 6.38 -3.66 -0.02 3.03 16 16 N -0.59 -14.38 2.97 -172.50 -0.51 -14.89 16 17 C -0.25 -6.77 9.56 -15.06 -0.14 -6.92 16 18 H 0.07 1.73 7.89 -52.49 -0.41 1.31 16 19 C 0.00 0.05 4.89 -17.43 -0.09 -0.03 16 20 N -0.90 -25.75 11.22 55.49 0.62 -25.13 16 21 Si 0.90 21.47 29.59 -169.99 -5.03 16.44 16 22 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 23 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 24 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 25 C 0.17 3.87 5.21 -3.90 -0.02 3.85 16 26 C -0.13 -2.23 5.24 -26.97 -0.14 -2.37 16 27 N -0.33 -4.41 10.61 33.29 0.35 -4.06 16 28 O 0.12 1.38 10.65 17.24 0.18 1.57 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.06 0.33 8.03 -51.93 -0.42 -0.08 16 32 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.07 0.24 8.14 -51.93 -0.42 -0.19 16 34 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.06 0.32 8.02 -51.93 -0.42 -0.09 16 36 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 37 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 38 H 0.18 1.72 8.06 -52.49 -0.42 1.29 16 39 H 0.09 1.33 8.07 -51.93 -0.42 0.91 16 40 H 0.09 1.49 7.41 -51.93 -0.38 1.11 16 41 H 0.08 1.19 7.51 -51.93 -0.39 0.80 16 42 H 0.08 1.10 8.09 -51.93 -0.42 0.68 16 43 H 0.05 0.85 8.01 -51.93 -0.42 0.43 16 44 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 45 H 0.02 0.39 7.49 -51.93 -0.39 0.01 16 46 H 0.06 1.15 7.92 -51.93 -0.41 0.74 16 47 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 48 H 0.09 2.32 5.98 -51.93 -0.31 2.01 16 49 H 0.02 0.44 8.07 -51.93 -0.42 0.02 16 50 H 0.05 0.84 8.12 -51.93 -0.42 0.42 16 51 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 LS Contribution 406.83 15.07 6.13 6.13 Total: -1.00 -31.51 406.83 -8.61 -40.13 By element: Atomic # 1 Polarization: 6.19 SS G_CDS: -8.59 Total: -2.41 kcal Atomic # 6 Polarization: 4.15 SS G_CDS: -1.24 Total: 2.91 kcal Atomic # 7 Polarization: -54.46 SS G_CDS: -0.16 Total: -54.62 kcal Atomic # 8 Polarization: -8.85 SS G_CDS: 0.28 Total: -8.58 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.03 Total: 16.44 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -31.51 -8.61 -40.13 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050589438.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.607 kcal (2) G-P(sol) polarization free energy of solvation -31.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.129 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds