Wall clock time and date at job start Wed Apr 1 2020 05:25:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.46839 * 2 1 4 4 C 1.53003 * 109.47261 * 239.99778 * 2 1 3 5 5 C 1.50699 * 109.47243 * 119.99687 * 2 1 3 6 6 C 1.35322 * 126.66266 * 60.28764 * 5 2 1 7 7 C 1.42276 * 103.91784 * 180.08936 * 6 5 2 8 8 C 1.48328 * 126.93586 * 179.90670 * 7 6 5 9 9 O 1.21494 * 119.99938 * 359.71204 * 8 7 6 10 10 N 1.34779 * 119.99897 * 179.70918 * 8 7 6 11 11 C 1.47666 * 134.45457 * 180.02562 * 10 8 7 12 12 C 1.53507 * 85.97733 * 204.29375 * 11 10 8 13 13 C 1.47658 * 134.45776 * 359.97309 * 10 8 7 14 14 C 1.52671 * 113.57136 * 91.01766 * 12 11 10 15 15 C 1.53339 * 109.11340 * 73.81443 * 14 12 11 16 16 N 1.46880 * 108.76370 * 52.40568 * 15 14 12 17 17 C 1.36938 * 120.46673 * 124.47322 * 16 15 14 18 18 H 1.07997 * 119.99685 * 331.56821 * 17 16 15 19 19 C 1.38811 * 119.99675 * 151.85026 * 17 16 15 20 20 N 1.31620 * 120.00000 * 342.21286 * 19 17 16 21 21 Si 1.86798 * 119.99732 * 162.22326 * 19 17 16 22 22 H 1.48502 * 109.47144 * 359.97438 * 21 19 17 23 23 H 1.48508 * 109.47161 * 119.99268 * 21 19 17 24 24 H 1.48495 * 109.46988 * 239.99359 * 21 19 17 25 25 C 1.46884 * 119.06727 * 304.74569 * 16 15 14 26 26 C 1.52671 * 113.56548 * 222.23317 * 12 11 10 27 27 N 1.30980 * 106.12381 * 359.64751 * 7 6 5 28 28 O 1.20902 * 111.44340 * 0.22861 * 27 7 6 29 29 H 1.08998 * 109.47007 * 299.99751 * 1 2 3 30 30 H 1.08997 * 109.46949 * 60.00346 * 1 2 3 31 31 H 1.09003 * 109.46625 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.46930 * 179.97438 * 3 2 1 33 33 H 1.08997 * 109.47068 * 299.99582 * 3 2 1 34 34 H 1.08999 * 109.47630 * 60.00200 * 3 2 1 35 35 H 1.08994 * 109.46980 * 300.00305 * 4 2 1 36 36 H 1.09000 * 109.46636 * 59.99632 * 4 2 1 37 37 H 1.08996 * 109.47314 * 179.97438 * 4 2 1 38 38 H 1.08001 * 128.04006 * 359.96526 * 6 5 2 39 39 H 1.09004 * 113.78724 * 90.03029 * 11 10 8 40 40 H 1.08996 * 113.79661 * 318.56408 * 11 10 8 41 41 H 1.09000 * 113.79135 * 41.43645 * 13 10 8 42 42 H 1.08998 * 113.79502 * 269.97069 * 13 10 8 43 43 H 1.09004 * 109.53427 * 313.92810 * 14 12 11 44 44 H 1.08997 * 109.59088 * 193.74073 * 14 12 11 45 45 H 1.09001 * 109.58424 * 292.62241 * 15 14 12 46 46 H 1.08998 * 109.58774 * 172.19141 * 15 14 12 47 47 H 0.96999 * 119.99617 * 180.02562 * 20 19 17 48 48 H 1.09001 * 109.58970 * 175.03802 * 25 16 15 49 49 H 1.08997 * 109.59051 * 295.47717 * 25 16 15 50 50 H 1.08998 * 109.53427 * 46.07952 * 26 12 11 51 51 H 1.08999 * 109.53115 * 166.22346 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 2.0324 -0.7103 1.2305 6 6 1.7945 -1.9974 1.5742 7 6 2.4872 -2.1560 2.8068 8 6 2.5618 -3.3838 3.6357 9 8 1.9869 -4.3931 3.2794 10 7 3.2674 -3.3798 4.7840 11 6 3.5518 -4.3861 5.8266 12 6 3.7765 -3.1923 6.7651 13 6 4.0665 -2.3677 5.5033 14 6 2.5165 -2.7533 7.5070 15 6 2.1991 -3.7749 8.6055 16 7 3.3993 -3.9716 9.4290 17 6 3.3499 -3.7834 10.7845 18 1 2.6414 -3.0865 11.2074 19 6 4.2144 -4.4839 11.6144 20 7 4.8258 -5.5611 11.1690 21 14 4.5097 -3.8981 13.3634 22 1 3.7095 -2.6731 13.6169 23 1 4.1033 -4.9615 14.3169 24 1 5.9516 -3.5936 13.5465 25 6 4.6549 -4.3671 8.7773 26 6 4.9872 -3.3553 7.6808 27 7 3.0503 -1.0007 3.0589 28 8 2.8063 -0.1919 2.1940 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9564 0.8900 35 1 1.6767 -1.7489 -1.2492 36 1 1.6767 -0.2075 -2.1392 37 1 3.1301 -0.7209 -1.2495 38 1 1.2123 -2.7326 1.0385 39 1 4.4511 -4.9726 5.6379 40 1 2.6906 -4.9989 6.0930 41 1 3.6144 -1.3759 5.5126 42 1 5.1186 -2.3546 5.2187 43 1 1.6821 -2.6991 6.8078 44 1 2.6796 -1.7738 7.9565 45 1 1.9086 -4.7220 8.1508 46 1 1.3860 -3.4014 9.2280 47 1 5.4296 -6.0508 11.7491 48 1 5.4591 -4.3836 9.5130 49 1 4.5411 -5.3568 8.3349 50 1 5.8381 -3.7114 7.1001 51 1 5.2324 -2.3953 8.1350 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001050589438.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:25:23 Heat of formation + Delta-G solvation = 57.455977 kcal Electronic energy + Delta-G solvation = -31121.832954 eV Core-core repulsion = 27025.477652 eV Total energy + Delta-G solvation = -4096.355302 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -46.22629 -41.97396 -39.72351 -38.28881 -37.57435 -35.11816 -34.27287 -32.41362 -31.93877 -31.44311 -29.00184 -28.23192 -28.16610 -27.64046 -26.13907 -24.93199 -24.24922 -23.98100 -22.65878 -21.92447 -19.87547 -19.53369 -18.91837 -18.43931 -18.31027 -17.71103 -17.11842 -16.87098 -16.79794 -15.79158 -15.67386 -15.47620 -15.17448 -15.12196 -14.97005 -14.95795 -14.64975 -14.62439 -14.04567 -13.97039 -13.45882 -13.24039 -13.21054 -13.10743 -13.05238 -12.96869 -12.67602 -12.60476 -12.55988 -12.28336 -12.25849 -12.05431 -12.01691 -11.85173 -11.78948 -11.66137 -11.61741 -11.40272 -11.29462 -10.99408 -10.50623 -10.48940 -9.92395 -8.65675 -7.86448 -5.31674 -0.02292 0.59151 1.44924 1.46543 1.49043 1.59119 1.89163 1.94498 2.52065 2.67560 3.17016 3.23525 3.35575 3.63029 3.74633 3.78350 3.85283 3.91958 3.93292 3.95931 4.14678 4.18611 4.29423 4.38433 4.41224 4.51809 4.52135 4.65137 4.69242 4.74290 4.78561 4.80765 4.82031 4.88656 4.89524 4.99032 5.01393 5.01673 5.06997 5.10452 5.12459 5.28484 5.29909 5.31540 5.39443 5.43314 5.52543 5.66554 5.79041 6.39590 6.41646 6.67354 6.99195 7.16943 7.87644 8.38740 9.19552 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.027499 B = 0.002094 C = 0.002049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.970245 B =13368.592994 C =13661.150429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.017 3.983 3 C -0.148 4.148 4 C -0.142 4.142 5 C -0.005 4.005 6 C -0.190 4.190 7 C -0.039 4.039 8 C 0.609 3.391 9 O -0.567 6.567 10 N -0.626 5.626 11 C 0.119 3.881 12 C -0.073 4.073 13 C 0.125 3.875 14 C -0.094 4.094 15 C 0.145 3.855 16 N -0.607 5.607 17 C -0.260 4.260 18 H 0.064 0.936 19 C -0.049 4.049 20 N -0.932 5.932 21 Si 0.964 3.036 22 H -0.268 1.268 23 H -0.295 1.295 24 H -0.288 1.288 25 C 0.176 3.824 26 C -0.110 4.110 27 N -0.339 5.339 28 O 0.130 5.870 29 H 0.056 0.944 30 H 0.094 0.906 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.090 0.910 34 H 0.059 0.941 35 H 0.061 0.939 36 H 0.094 0.906 37 H 0.057 0.943 38 H 0.187 0.813 39 H 0.100 0.900 40 H 0.068 0.932 41 H 0.090 0.910 42 H 0.107 0.893 43 H 0.059 0.941 44 H 0.069 0.931 45 H 0.010 0.990 46 H 0.052 0.948 47 H 0.250 0.750 48 H 0.057 0.943 49 H -0.001 1.001 50 H 0.080 0.920 51 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.319 15.061 -26.808 31.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.016 3.984 3 C -0.205 4.205 4 C -0.199 4.199 5 C -0.068 4.068 6 C -0.213 4.213 7 C -0.197 4.197 8 C 0.398 3.602 9 O -0.445 6.445 10 N -0.359 5.359 11 C -0.003 4.003 12 C -0.074 4.074 13 C 0.003 3.997 14 C -0.133 4.133 15 C 0.020 3.980 16 N -0.331 5.331 17 C -0.390 4.390 18 H 0.081 0.919 19 C -0.245 4.245 20 N -0.578 5.578 21 Si 0.793 3.207 22 H -0.192 1.192 23 H -0.222 1.222 24 H -0.215 1.215 25 C 0.050 3.950 26 C -0.150 4.150 27 N -0.039 5.039 28 O 0.053 5.947 29 H 0.075 0.925 30 H 0.113 0.887 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.109 0.891 34 H 0.078 0.922 35 H 0.080 0.920 36 H 0.113 0.887 37 H 0.076 0.924 38 H 0.205 0.795 39 H 0.118 0.882 40 H 0.087 0.913 41 H 0.109 0.891 42 H 0.125 0.875 43 H 0.077 0.923 44 H 0.087 0.913 45 H 0.028 0.972 46 H 0.071 0.929 47 H 0.059 0.941 48 H 0.076 0.924 49 H 0.017 0.983 50 H 0.099 0.901 51 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -3.866 14.807 -26.021 30.187 hybrid contribution -0.220 -1.025 0.923 1.397 sum -4.085 13.781 -25.098 28.923 Atomic orbital electron populations 1.21989 0.91020 1.03168 1.03793 1.19444 0.96753 0.95740 0.86464 1.21943 1.01791 0.92938 1.03866 1.21981 1.01558 1.00729 0.95618 1.25071 0.94846 0.92965 0.93936 1.22502 1.05160 0.97911 0.95693 1.23310 1.03699 0.93938 0.98749 1.16828 0.79008 0.85549 0.78865 1.90757 1.48264 1.34237 1.71283 1.50006 1.48167 1.17652 1.20079 1.23386 1.01218 0.93136 0.82542 1.21884 0.97223 0.94985 0.93282 1.23502 0.96487 0.93384 0.86299 1.21566 0.95286 0.99588 0.96824 1.20962 0.89485 0.95430 0.92163 1.44267 1.05257 1.80630 1.02910 1.19501 1.19081 1.17215 0.83237 0.91866 1.25756 1.01735 0.95592 1.01394 1.70187 1.33183 1.17213 1.37251 0.85257 0.77473 0.77726 0.80267 1.19240 1.22204 1.21481 1.20524 0.88784 0.92795 0.92874 1.21838 0.95596 1.00820 0.96734 1.74222 1.18732 1.00222 1.10688 1.84763 1.50790 1.34888 1.24257 0.92520 0.88702 0.92036 0.92025 0.89133 0.92157 0.92018 0.88730 0.92376 0.79535 0.88166 0.91320 0.89134 0.87510 0.92287 0.91267 0.97212 0.92914 0.94102 0.92427 0.98273 0.90107 0.91699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.06 8.36 71.98 0.60 -0.45 16 2 C 0.02 0.16 0.94 -52.93 -0.05 0.11 16 3 C -0.15 -1.06 8.07 71.98 0.58 -0.48 16 4 C -0.14 -0.99 8.36 71.98 0.60 -0.38 16 5 C 0.00 -0.08 5.76 25.01 0.14 0.06 16 6 C -0.19 -4.04 10.40 22.60 0.24 -3.81 16 7 C -0.04 -1.09 7.14 42.96 0.31 -0.78 16 8 C 0.61 20.20 8.08 86.93 0.70 20.90 16 9 O -0.57 -22.09 17.68 -3.70 -0.07 -22.15 16 10 N -0.63 -19.28 3.44 -845.43 -2.91 -22.19 16 11 C 0.12 3.78 7.62 86.32 0.66 4.44 16 12 C -0.07 -2.26 0.77 -52.03 -0.04 -2.30 16 13 C 0.12 3.30 7.07 86.32 0.61 3.91 16 14 C -0.09 -3.18 5.22 30.60 0.16 -3.02 16 15 C 0.15 6.10 6.38 86.42 0.55 6.65 16 16 N -0.61 -30.05 2.97 -699.68 -2.08 -32.13 16 17 C -0.26 -14.20 9.56 84.03 0.80 -13.40 16 18 H 0.06 3.40 7.89 -2.91 -0.02 3.38 16 19 C -0.05 -2.73 4.89 84.86 0.41 -2.32 16 20 N -0.93 -54.66 11.22 21.65 0.24 -54.42 16 21 Si 0.96 44.68 29.59 68.60 2.03 46.70 16 22 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 23 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 24 H -0.29 -13.21 7.11 99.48 0.71 -12.51 16 25 C 0.18 8.11 5.21 86.26 0.45 8.56 16 26 C -0.11 -3.77 5.24 30.44 0.16 -3.61 16 27 N -0.34 -8.64 10.61 -49.52 -0.53 -9.17 16 28 O 0.13 2.71 10.65 71.87 0.77 3.47 16 29 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.09 0.30 8.14 -2.39 -0.02 0.28 16 31 H 0.06 0.51 8.03 -2.39 -0.02 0.49 16 32 H 0.06 0.50 8.14 -2.38 -0.02 0.48 16 33 H 0.09 0.29 8.14 -2.39 -0.02 0.27 16 34 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 35 H 0.06 0.48 8.02 -2.39 -0.02 0.46 16 36 H 0.09 0.27 8.14 -2.39 -0.02 0.25 16 37 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 38 H 0.19 3.47 8.06 -2.91 -0.02 3.45 16 39 H 0.10 2.94 8.07 -2.38 -0.02 2.92 16 40 H 0.07 2.43 7.41 -2.39 -0.02 2.41 16 41 H 0.09 2.34 7.51 -2.39 -0.02 2.32 16 42 H 0.11 2.42 8.09 -2.39 -0.02 2.40 16 43 H 0.06 1.92 8.01 -2.38 -0.02 1.90 16 44 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 45 H 0.01 0.43 7.49 -2.39 -0.02 0.41 16 46 H 0.05 2.20 7.92 -2.39 -0.02 2.18 16 47 H 0.25 14.17 8.31 -92.71 -0.77 13.40 16 48 H 0.06 3.04 5.98 -2.39 -0.01 3.03 16 49 H 0.00 -0.04 8.07 -2.39 -0.02 -0.06 16 50 H 0.08 2.34 8.12 -2.39 -0.02 2.33 16 51 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 Total: -1.00 -69.54 406.83 5.26 -64.29 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: 0.91 Total: 11.52 kcal Atomic # 6 Polarization: 7.17 SS G_CDS: 6.89 Total: 14.06 kcal Atomic # 7 Polarization: -112.63 SS G_CDS: -5.27 Total: -117.89 kcal Atomic # 8 Polarization: -19.38 SS G_CDS: 0.70 Total: -18.68 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.70 kcal Total: -69.54 5.26 -64.29 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050589438.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.742 kcal (2) G-P(sol) polarization free energy of solvation -69.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.286 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds