Wall clock time and date at job start Wed Apr 1 2020 05:24:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47154 * 2 1 4 4 C 1.52991 * 109.47256 * 239.99853 * 2 1 3 5 5 C 1.50701 * 109.46842 * 119.99733 * 2 1 3 6 6 C 1.38629 * 120.32531 * 179.97438 * 5 2 1 7 7 C 1.38585 * 118.49158 * 179.75389 * 6 5 2 8 8 C 1.39315 * 119.05718 * 0.54968 * 7 6 5 9 9 C 1.48162 * 119.72348 * 179.70983 * 8 7 6 10 10 O 1.21516 * 120.00143 * 359.73203 * 9 8 7 11 11 N 1.34778 * 120.00267 * 179.72949 * 9 8 7 12 12 C 1.46501 * 120.00383 * 180.02562 * 11 9 8 13 13 C 1.52998 * 109.47015 * 180.02562 * 12 11 9 14 14 H 1.08999 * 109.68084 * 59.98809 * 13 12 11 15 15 C 1.53298 * 109.67811 * 180.54461 * 13 12 11 16 16 O 1.42971 * 109.22062 * 172.02446 * 15 13 12 17 17 C 1.42954 * 114.16807 * 297.41803 * 16 15 13 18 18 C 1.53300 * 109.22465 * 62.58170 * 17 16 15 19 19 N 1.47150 * 109.68211 * 299.46957 * 13 12 11 20 20 C 1.36935 * 120.98454 * 9.47050 * 19 13 12 21 21 H 1.08002 * 119.99827 * 328.84535 * 20 19 13 22 22 C 1.38813 * 120.00451 * 148.84376 * 20 19 13 23 23 N 1.31615 * 120.00156 * 164.10808 * 22 20 19 24 24 Si 1.86801 * 119.99724 * 344.10057 * 22 20 19 25 25 H 1.48502 * 109.47280 * 86.03001 * 24 22 20 26 26 H 1.48499 * 109.47226 * 206.03192 * 24 22 20 27 27 H 1.48509 * 109.47180 * 326.03487 * 24 22 20 28 28 N 1.32716 * 120.55055 * 359.43800 * 8 7 6 29 29 C 1.31530 * 121.64598 * 0.27273 * 28 8 7 30 30 H 1.08999 * 109.47809 * 300.00465 * 1 2 3 31 31 H 1.09003 * 109.46911 * 60.00075 * 1 2 3 32 32 H 1.09003 * 109.47423 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47572 * 179.97438 * 3 2 1 34 34 H 1.09003 * 109.47151 * 299.99778 * 3 2 1 35 35 H 1.09006 * 109.47157 * 59.99539 * 3 2 1 36 36 H 1.08996 * 109.47528 * 299.99701 * 4 2 1 37 37 H 1.08998 * 109.47577 * 60.00275 * 4 2 1 38 38 H 1.09001 * 109.47184 * 180.02562 * 4 2 1 39 39 H 1.08006 * 120.74947 * 0.02562 * 6 5 2 40 40 H 1.07995 * 120.47634 * 180.28359 * 7 6 5 41 41 H 0.97003 * 119.99639 * 0.02562 * 11 9 8 42 42 H 1.09001 * 109.46780 * 59.99799 * 12 11 9 43 43 H 1.08999 * 109.46554 * 299.99949 * 12 11 9 44 44 H 1.08997 * 109.51285 * 291.94615 * 15 13 12 45 45 H 1.09000 * 109.51355 * 52.05359 * 15 13 12 46 46 H 1.08996 * 109.51658 * 182.50109 * 17 16 15 47 47 H 1.09005 * 109.51414 * 302.66023 * 17 16 15 48 48 H 1.08997 * 109.68380 * 187.97621 * 18 17 16 49 49 H 1.08995 * 109.68438 * 67.41863 * 18 17 16 50 50 H 0.97005 * 119.99516 * 180.02562 * 23 22 20 51 51 H 1.08002 * 119.54453 * 179.97438 * 29 28 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2491 5 6 2.0322 -0.7104 1.2305 6 6 3.3937 -0.8414 1.4564 7 6 3.8136 -1.4971 2.6028 8 6 2.8580 -2.0092 3.4778 9 6 3.2905 -2.7186 4.7045 10 8 4.4743 -2.8560 4.9416 11 7 2.3708 -3.2115 5.5576 12 6 2.7984 -3.9125 6.7710 13 6 1.5675 -4.3677 7.5575 14 1 0.9677 -5.0398 6.9439 15 6 2.0096 -5.0900 8.8353 16 8 0.8640 -5.3461 9.6515 17 6 0.1907 -4.1680 10.1012 18 6 -0.3445 -3.3983 8.8883 19 7 0.7634 -3.1965 7.9410 20 6 1.0413 -1.9545 7.4357 21 1 2.0579 -1.6879 7.1867 22 6 0.0166 -1.0381 7.2434 23 7 0.2975 0.2349 7.0624 24 14 -1.7612 -1.6117 7.2413 25 1 -2.2727 -1.6436 8.6351 26 1 -2.5827 -0.6747 6.4338 27 1 -1.8413 -2.9732 6.6535 28 7 1.5636 -1.8623 3.2243 29 6 1.1378 -1.2393 2.1470 30 1 -0.3635 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 3.1300 1.4426 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6766 1.9564 0.8900 36 1 1.6768 -1.7489 -1.2492 37 1 1.6767 -0.2075 -2.1392 38 1 3.1300 -0.7216 -1.2489 39 1 4.1109 -0.4376 0.7570 40 1 4.8665 -1.6134 2.8129 41 1 1.4258 -3.1022 5.3682 42 1 3.3959 -3.2406 7.3872 43 1 3.3959 -4.7819 6.4967 44 1 2.4880 -6.0337 8.5731 45 1 2.7145 -4.4639 9.3822 46 1 -0.6394 -4.4481 10.7497 47 1 0.8884 -3.5381 10.6532 48 1 -0.7338 -2.4321 9.2091 49 1 -1.1370 -3.9732 8.4092 50 1 -0.4187 0.8753 6.9285 51 1 0.0764 -1.1395 1.9740 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001050920365.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:24:14 Heat of formation + Delta-G solvation = -40.375046 kcal Electronic energy + Delta-G solvation = -31854.606587 eV Core-core repulsion = 27754.009013 eV Total energy + Delta-G solvation = -4100.597573 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.81797 -40.69967 -39.88175 -37.75697 -37.05254 -35.38668 -33.67758 -33.30456 -32.66567 -31.46514 -29.25514 -28.47364 -28.09165 -27.35574 -25.32444 -25.18159 -24.20060 -23.68198 -21.79061 -21.54123 -20.33692 -19.39728 -18.42326 -17.91021 -17.68936 -17.18416 -16.82079 -16.61830 -16.31989 -16.07821 -15.93497 -15.85571 -15.55334 -15.26231 -15.20748 -14.81814 -14.62163 -14.44675 -14.36999 -14.10784 -13.82357 -13.64510 -13.48028 -13.19648 -13.08531 -12.89260 -12.83796 -12.54695 -12.35863 -12.31983 -12.07438 -12.06035 -11.92737 -11.70936 -11.58933 -11.41859 -11.26343 -11.02265 -10.82309 -10.52092 -10.37016 -10.11768 -9.80283 -8.84293 -8.11092 -5.50979 -0.34145 0.27166 1.28235 1.41324 1.48488 1.73675 2.21921 2.42677 2.85933 2.88657 3.04259 3.20843 3.24148 3.56162 3.70084 3.86393 3.91183 3.94892 4.08184 4.11216 4.13613 4.20074 4.26956 4.27326 4.39113 4.46991 4.49472 4.56854 4.66879 4.70289 4.72677 4.77104 4.80588 4.89846 4.90485 4.92698 4.96550 4.98574 5.03801 5.11564 5.16637 5.18821 5.30873 5.44312 5.46749 5.51011 5.63561 5.87233 6.18386 6.20465 6.52048 6.84793 6.89037 7.22211 7.59174 7.99241 9.07120 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013737 B = 0.003391 C = 0.002931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2037.829516 B = 8255.906356 C = 9549.174727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.024 4.024 3 C -0.139 4.139 4 C -0.135 4.135 5 C -0.093 4.093 6 C -0.074 4.074 7 C -0.115 4.115 8 C 0.051 3.949 9 C 0.559 3.441 10 O -0.582 6.582 11 N -0.676 5.676 12 C 0.136 3.864 13 C 0.127 3.873 14 H 0.053 0.947 15 C 0.059 3.941 16 O -0.389 6.389 17 C 0.054 3.946 18 C 0.084 3.916 19 N -0.621 5.621 20 C -0.235 4.235 21 H 0.061 0.939 22 C -0.017 4.017 23 N -0.950 5.950 24 Si 0.940 3.060 25 H -0.273 1.273 26 H -0.317 1.317 27 H -0.267 1.267 28 N -0.473 5.473 29 C 0.081 3.919 30 H 0.049 0.951 31 H 0.081 0.919 32 H 0.061 0.939 33 H 0.066 0.934 34 H 0.081 0.919 35 H 0.041 0.959 36 H 0.052 0.948 37 H 0.079 0.921 38 H 0.065 0.935 39 H 0.175 0.825 40 H 0.150 0.850 41 H 0.415 0.585 42 H 0.048 0.952 43 H 0.090 0.910 44 H 0.126 0.874 45 H 0.051 0.949 46 H 0.117 0.883 47 H 0.050 0.950 48 H 0.065 0.935 49 H 0.036 0.964 50 H 0.258 0.742 51 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.751 -4.194 -14.003 14.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.024 4.024 3 C -0.197 4.197 4 C -0.192 4.192 5 C -0.095 4.095 6 C -0.100 4.100 7 C -0.136 4.136 8 C -0.087 4.087 9 C 0.345 3.655 10 O -0.464 6.464 11 N -0.325 5.325 12 C 0.012 3.988 13 C 0.022 3.978 14 H 0.071 0.929 15 C -0.020 4.020 16 O -0.307 6.307 17 C -0.024 4.024 18 C -0.041 4.041 19 N -0.348 5.348 20 C -0.364 4.364 21 H 0.078 0.922 22 C -0.213 4.213 23 N -0.596 5.596 24 Si 0.770 3.230 25 H -0.200 1.200 26 H -0.246 1.246 27 H -0.192 1.192 28 N -0.183 5.183 29 C -0.079 4.079 30 H 0.068 0.932 31 H 0.100 0.900 32 H 0.080 0.920 33 H 0.085 0.915 34 H 0.100 0.900 35 H 0.060 0.940 36 H 0.071 0.929 37 H 0.098 0.902 38 H 0.084 0.916 39 H 0.192 0.808 40 H 0.167 0.833 41 H 0.253 0.747 42 H 0.067 0.933 43 H 0.108 0.892 44 H 0.144 0.856 45 H 0.069 0.931 46 H 0.135 0.865 47 H 0.068 0.932 48 H 0.083 0.917 49 H 0.054 0.946 50 H 0.067 0.933 51 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 1.859 -4.731 -13.143 14.091 hybrid contribution -0.827 1.076 -0.269 1.383 sum 1.032 -3.655 -13.411 13.939 Atomic orbital electron populations 1.22024 0.93495 1.02519 1.02785 1.19577 0.96370 0.95326 0.91154 1.21924 1.01716 0.93626 1.02394 1.21884 1.01685 1.00005 0.95616 1.21398 0.93994 0.96666 0.97485 1.21730 0.96068 0.96045 0.96120 1.22216 1.01195 0.96181 0.93980 1.21084 0.90299 1.01049 0.96237 1.18229 0.85305 0.78711 0.83263 1.90662 1.17458 1.61286 1.77000 1.45886 1.10855 1.54471 1.21267 1.21255 0.96105 0.96137 0.85255 1.21644 0.91715 0.88991 0.95487 0.92896 1.22993 0.87443 1.01387 0.90133 1.87838 1.43458 1.30864 1.68542 1.23031 0.97279 0.86957 0.95137 1.22146 0.90990 0.99362 0.91576 1.44564 1.35854 1.04383 1.49995 1.18676 0.93194 0.88162 1.36356 0.92187 1.25797 1.00896 0.95255 0.99302 1.69923 1.32995 1.02119 1.54522 0.86083 0.82326 0.77315 0.77246 1.19950 1.24593 1.19212 1.67534 1.16499 1.14457 1.19853 1.23182 1.01606 0.94258 0.88851 0.93187 0.90039 0.91978 0.91543 0.90033 0.94000 0.92894 0.90222 0.91562 0.80777 0.83266 0.74683 0.93338 0.89159 0.85615 0.93091 0.86502 0.93211 0.91687 0.94622 0.93319 0.81270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.46 7.14 71.98 0.51 -1.95 16 2 C -0.02 -0.40 0.86 -52.93 -0.05 -0.44 16 3 C -0.14 -2.14 8.29 71.98 0.60 -1.55 16 4 C -0.13 -1.70 8.29 71.98 0.60 -1.10 16 5 C -0.09 -2.26 4.77 -19.69 -0.09 -2.35 16 6 C -0.07 -1.77 8.84 22.45 0.20 -1.57 16 7 C -0.11 -3.60 9.63 22.61 0.22 -3.38 16 8 C 0.05 1.98 6.75 41.91 0.28 2.26 16 9 C 0.56 24.30 7.81 86.88 0.68 24.98 16 10 O -0.58 -26.71 16.32 -3.77 -0.06 -26.77 16 11 N -0.68 -28.96 3.77 -465.66 -1.75 -30.72 16 12 C 0.14 5.22 4.44 86.38 0.38 5.60 16 13 C 0.13 4.73 3.21 44.97 0.14 4.88 16 14 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 15 C 0.06 1.82 6.29 72.08 0.45 2.28 16 16 O -0.39 -12.90 10.74 -148.98 -1.60 -14.50 16 17 C 0.05 1.80 6.98 72.08 0.50 2.30 16 18 C 0.08 3.44 4.38 86.35 0.38 3.82 16 19 N -0.62 -27.92 2.77 -673.71 -1.87 -29.79 16 20 C -0.23 -12.60 7.50 84.03 0.63 -11.97 16 21 H 0.06 3.63 6.02 -2.91 -0.02 3.61 16 22 C -0.02 -0.95 5.29 84.86 0.45 -0.50 16 23 N -0.95 -58.58 13.97 21.65 0.30 -58.27 16 24 Si 0.94 45.75 24.28 68.60 1.67 47.41 16 25 H -0.27 -12.44 6.42 99.48 0.64 -11.80 16 26 H -0.32 -15.94 7.11 99.48 0.71 -15.24 16 27 H -0.27 -12.63 6.79 99.48 0.68 -11.96 16 28 N -0.47 -18.45 9.54 -184.91 -1.76 -20.22 16 29 C 0.08 2.51 10.15 84.81 0.86 3.38 16 30 H 0.05 0.96 7.53 -2.39 -0.02 0.94 16 31 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.06 1.00 7.53 -2.39 -0.02 0.98 16 33 H 0.07 0.91 7.45 -2.39 -0.02 0.89 16 34 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.04 0.81 8.14 -2.38 -0.02 0.79 16 36 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 37 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 38 H 0.07 0.74 7.45 -2.39 -0.02 0.72 16 39 H 0.17 2.72 7.24 -2.91 -0.02 2.70 16 40 H 0.15 4.42 7.64 -2.91 -0.02 4.40 16 41 H 0.42 19.00 6.65 -92.71 -0.62 18.39 16 42 H 0.05 2.08 7.56 -2.39 -0.02 2.06 16 43 H 0.09 2.94 8.14 -2.39 -0.02 2.92 16 44 H 0.13 3.00 8.14 -2.39 -0.02 2.98 16 45 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 46 H 0.12 3.15 8.14 -2.39 -0.02 3.13 16 47 H 0.05 1.69 8.14 -2.38 -0.02 1.67 16 48 H 0.06 2.89 4.85 -2.39 -0.01 2.88 16 49 H 0.04 1.46 6.91 -2.39 -0.02 1.44 16 50 H 0.26 15.33 8.31 -92.70 -0.77 14.56 16 51 H 0.17 4.68 5.91 -2.91 -0.02 4.66 16 Total: -1.00 -72.48 392.94 1.90 -70.58 By element: Atomic # 1 Polarization: 37.36 SS G_CDS: 0.23 Total: 37.59 kcal Atomic # 6 Polarization: 17.94 SS G_CDS: 6.75 Total: 24.69 kcal Atomic # 7 Polarization: -133.91 SS G_CDS: -5.08 Total: -139.00 kcal Atomic # 8 Polarization: -39.61 SS G_CDS: -1.66 Total: -41.27 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 1.67 Total: 47.41 kcal Total: -72.48 1.90 -70.58 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050920365.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.207 kcal (2) G-P(sol) polarization free energy of solvation -72.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds