Wall clock time and date at job start Wed Apr 1 2020 05:24:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.47154 * 2 1 4 4 C 1.53005 * 109.47359 * 119.99813 * 2 1 3 5 5 C 1.50705 * 109.47287 * 174.99909 * 4 2 1 6 6 C 1.35450 * 126.06341 * 89.97942 * 5 4 2 7 7 N 1.35538 * 108.86703 * 180.02562 * 6 5 4 8 8 H 0.97000 * 125.67532 * 179.97438 * 7 6 5 9 9 C 1.37647 * 108.64657 * 0.02562 * 7 6 5 10 10 C 1.46673 * 126.23630 * 180.02562 * 9 7 6 11 11 O 1.21696 * 120.00424 * 180.02562 * 10 9 7 12 12 N 1.34782 * 119.99747 * 0.02562 * 10 9 7 13 13 C 1.46495 * 119.99866 * 180.02562 * 12 10 9 14 14 H 1.09002 * 110.42492 * 36.05137 * 13 12 10 15 15 C 1.54180 * 110.47165 * 273.55046 * 13 12 10 16 16 O 1.43997 * 107.54378 * 242.86753 * 15 13 12 17 17 C 1.43159 * 106.80447 * 335.37505 * 16 15 13 18 18 C 1.52713 * 116.34336 * 167.52334 * 17 16 15 19 19 N 1.47816 * 85.72685 * 95.23221 * 18 17 16 20 20 C 1.36938 * 134.38382 * 203.76675 * 19 18 17 21 21 H 1.08005 * 119.99849 * 179.97438 * 20 19 18 22 22 C 1.38811 * 120.00498 * 359.97438 * 20 19 18 23 23 N 1.31620 * 119.99389 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 120.00144 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47284 * 90.00083 * 24 22 20 26 26 H 1.48502 * 109.46739 * 209.99645 * 24 22 20 27 27 H 1.48497 * 109.47147 * 329.99686 * 24 22 20 28 28 C 1.47812 * 91.23098 * 23.75094 * 19 18 17 29 29 C 1.53806 * 105.32617 * 37.96798 * 17 16 15 30 30 C 1.37878 * 107.52939 * 0.25968 * 9 7 6 31 31 H 1.08999 * 109.47224 * 300.00268 * 1 2 3 32 32 H 1.08997 * 109.47206 * 60.00151 * 1 2 3 33 33 H 1.09000 * 109.47365 * 180.02562 * 1 2 3 34 34 H 1.09008 * 109.47412 * 239.99909 * 2 1 3 35 35 H 1.09000 * 109.47233 * 60.00314 * 3 2 1 36 36 H 1.09007 * 109.47105 * 179.97438 * 3 2 1 37 37 H 1.09001 * 109.46946 * 299.99497 * 3 2 1 38 38 H 1.08998 * 109.46910 * 55.00115 * 4 2 1 39 39 H 1.09000 * 109.47118 * 295.00166 * 4 2 1 40 40 H 1.08003 * 125.56896 * 359.97438 * 6 5 4 41 41 H 0.96999 * 119.99913 * 0.02562 * 12 10 9 42 42 H 1.09002 * 109.85413 * 2.39805 * 15 13 12 43 43 H 1.09001 * 109.85355 * 123.33899 * 15 13 12 44 44 H 1.08998 * 113.83016 * 209.43343 * 18 17 16 45 45 H 1.08997 * 113.83348 * 341.03485 * 18 17 16 46 46 H 0.97005 * 119.99534 * 180.02562 * 23 22 20 47 47 H 1.09005 * 113.83278 * 222.05385 * 28 19 18 48 48 H 1.09001 * 113.94876 * 90.46315 * 28 19 18 49 49 H 1.09004 * 110.94527 * 206.55092 * 29 17 16 50 50 H 1.09001 * 110.94402 * 82.84934 * 29 17 16 51 51 H 1.08008 * 126.44809 * 179.70698 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5420 -0.8294 1.1889 6 6 4.4266 0.0741 1.6744 7 7 5.6841 -0.3701 1.4327 8 1 6.5030 0.0883 1.6779 9 6 5.6057 -1.5796 0.7801 10 6 6.7375 -2.4001 0.3361 11 8 6.5367 -3.4563 -0.2341 12 7 7.9999 -1.9843 0.5597 13 6 9.1303 -2.8036 0.1157 14 1 8.8981 -3.2912 -0.8311 15 6 9.4907 -3.8515 1.1877 16 8 10.8291 -3.5692 1.6380 17 6 11.4833 -2.8661 0.5763 18 6 12.8135 -2.2009 0.9228 19 7 13.4398 -3.4321 0.3967 20 6 14.6429 -4.0551 0.5958 21 1 14.8674 -4.9747 0.0758 22 6 15.5740 -3.5048 1.4659 23 7 15.3006 -2.3838 2.0992 24 14 17.2154 -4.3542 1.7368 25 1 18.2042 -3.8462 0.7523 26 1 17.6974 -4.0724 3.1129 27 1 17.0495 -5.8194 1.5608 28 6 12.2492 -3.7229 -0.4296 29 6 10.4101 -1.9392 -0.0193 30 6 4.2695 -1.8766 0.6152 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 -1.0276 0.0005 34 1 1.8933 -0.5139 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 3.1300 1.4425 0.0005 37 1 1.6767 1.9563 -0.8900 38 1 1.6054 -1.7198 1.2952 39 1 1.7516 -0.1583 2.1370 40 1 4.1717 0.9981 2.1721 41 1 8.1600 -1.1427 1.0145 42 1 8.7957 -3.7793 2.0243 43 1 9.4484 -4.8517 0.7566 44 1 13.0278 -1.3106 0.3316 45 1 12.9660 -2.0513 1.9916 46 1 15.9514 -1.9990 2.7070 47 1 11.9567 -4.7729 -0.4265 48 1 12.2905 -3.2950 -1.4312 49 1 10.6227 -1.7186 -1.0654 50 1 10.3229 -1.0207 0.5612 51 1 3.8617 -2.7542 0.1354 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053983788.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:24:55 Heat of formation + Delta-G solvation = 12.606599 kcal Electronic energy + Delta-G solvation = -29995.250254 eV Core-core repulsion = 25896.950137 eV Total energy + Delta-G solvation = -4098.300117 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.68459 -40.23256 -38.92622 -36.69969 -36.19403 -34.53903 -32.10503 -31.86458 -30.75355 -29.56404 -28.17513 -27.48252 -26.53264 -25.88788 -24.93510 -23.57182 -21.96837 -21.17798 -20.76065 -20.39087 -19.71229 -19.01853 -18.65404 -16.75800 -16.56125 -16.12573 -15.51568 -15.43738 -15.31620 -14.96014 -14.83246 -14.46366 -14.34377 -14.05984 -13.82071 -13.70034 -13.59686 -13.47219 -13.09015 -12.95912 -12.64837 -12.58989 -12.22275 -11.93239 -11.87202 -11.70295 -11.64072 -11.29704 -11.22641 -11.15551 -11.14633 -10.92582 -10.82374 -10.70768 -10.26703 -10.10872 -9.73366 -9.59889 -9.33682 -9.08043 -8.91674 -8.78417 -8.41425 -6.88525 -5.75428 -3.06886 1.22622 2.39300 2.77318 2.91260 3.19822 3.41021 3.45795 3.48072 4.19520 4.45779 4.47296 4.53393 4.60826 4.67610 4.71842 4.75264 4.97960 5.00002 5.02138 5.12816 5.19529 5.29501 5.31969 5.34702 5.37674 5.39793 5.51687 5.57194 5.60296 5.63358 5.72027 5.76330 5.84037 5.87739 5.88590 5.95055 5.99467 5.99872 6.09265 6.31085 6.33775 6.47243 6.51740 6.59873 6.65065 6.89544 7.03741 7.17021 7.29695 7.48350 7.69133 7.97809 7.98994 9.05472 9.72028 10.58064 11.42340 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.036287 B = 0.001683 C = 0.001655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.448436 B =16629.071256 C =16910.191428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.093 4.093 3 C -0.147 4.147 4 C -0.041 4.041 5 C -0.173 4.173 6 C 0.026 3.974 7 N -0.539 5.539 8 H 0.417 0.583 9 C -0.053 4.053 10 C 0.587 3.413 11 O -0.528 6.528 12 N -0.720 5.720 13 C 0.115 3.885 14 H 0.104 0.896 15 C 0.037 3.963 16 O -0.334 6.334 17 C 0.060 3.940 18 C 0.177 3.823 19 N -0.604 5.604 20 C -0.220 4.220 21 H 0.080 0.920 22 C -0.008 4.008 23 N -0.923 5.923 24 Si 0.913 3.087 25 H -0.289 1.289 26 H -0.290 1.290 27 H -0.280 1.280 28 C 0.103 3.897 29 C -0.145 4.145 30 C -0.100 4.100 31 H 0.053 0.947 32 H 0.053 0.947 33 H 0.054 0.946 34 H 0.071 0.929 35 H 0.051 0.949 36 H 0.058 0.942 37 H 0.049 0.951 38 H 0.069 0.931 39 H 0.066 0.934 40 H 0.168 0.832 41 H 0.395 0.605 42 H 0.079 0.921 43 H 0.064 0.936 44 H 0.042 0.958 45 H 0.082 0.918 46 H 0.253 0.747 47 H 0.049 0.951 48 H 0.044 0.956 49 H 0.089 0.911 50 H 0.081 0.919 51 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.344 9.811 -2.353 30.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.112 4.112 3 C -0.205 4.205 4 C -0.079 4.079 5 C -0.179 4.179 6 C -0.110 4.110 7 N -0.135 5.135 8 H 0.254 0.746 9 C -0.166 4.166 10 C 0.375 3.625 11 O -0.404 6.404 12 N -0.372 5.372 13 C 0.011 3.989 14 H 0.122 0.878 15 C -0.041 4.041 16 O -0.252 6.252 17 C 0.019 3.981 18 C 0.052 3.948 19 N -0.330 5.330 20 C -0.348 4.348 21 H 0.098 0.902 22 C -0.204 4.204 23 N -0.570 5.570 24 Si 0.744 3.256 25 H -0.217 1.217 26 H -0.216 1.216 27 H -0.206 1.206 28 C -0.023 4.023 29 C -0.184 4.184 30 C -0.127 4.127 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.089 0.911 35 H 0.070 0.930 36 H 0.077 0.923 37 H 0.069 0.931 38 H 0.088 0.912 39 H 0.085 0.915 40 H 0.186 0.814 41 H 0.229 0.771 42 H 0.098 0.902 43 H 0.083 0.917 44 H 0.060 0.940 45 H 0.100 0.900 46 H 0.063 0.937 47 H 0.068 0.932 48 H 0.061 0.939 49 H 0.107 0.893 50 H 0.099 0.901 51 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -27.868 8.953 -2.393 29.368 hybrid contribution 1.332 0.374 0.288 1.413 sum -26.536 9.327 -2.105 28.206 Atomic orbital electron populations 1.21855 0.95391 1.01696 1.01612 1.21102 0.95078 0.96429 0.98556 1.21873 1.01484 0.95854 1.01248 1.20031 0.89543 1.00783 0.97589 1.19390 0.95426 0.96432 1.06699 1.21832 0.82793 1.00858 1.05509 1.41977 1.08450 1.17498 1.45564 0.74604 1.20407 0.95439 0.90403 1.10311 1.17120 0.81548 0.84987 0.78833 1.90857 1.84757 1.22596 1.42149 1.46017 1.05411 1.24843 1.60881 1.22487 0.85341 0.92271 0.98839 0.87827 1.23592 0.85689 0.97793 0.97055 1.88862 1.22686 1.76734 1.36941 1.23807 0.92822 0.92414 0.89044 1.22142 0.82319 0.89377 1.00970 1.45845 1.14629 1.24292 1.48262 1.19008 0.90159 1.04235 1.21353 0.90187 1.24765 0.98632 0.97518 0.99516 1.69803 1.35214 1.20198 1.31795 0.86098 0.83575 0.78776 0.77198 1.21651 1.21616 1.20600 1.22922 0.87545 0.98107 0.93741 1.23205 0.93313 0.99017 1.02882 1.21200 0.90109 0.99743 1.01666 0.92789 0.92837 0.92690 0.91101 0.92975 0.92324 0.93150 0.91195 0.91496 0.81447 0.77104 0.90245 0.91748 0.94033 0.90019 0.93662 0.93244 0.93902 0.89255 0.90050 0.83634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.76 9.19 37.15 0.34 -0.42 16 2 C -0.09 -0.56 2.91 -90.62 -0.26 -0.82 16 3 C -0.15 -0.82 8.91 37.16 0.33 -0.49 16 4 C -0.04 -0.26 5.18 -27.88 -0.14 -0.40 16 5 C -0.17 -1.38 4.82 -105.02 -0.51 -1.88 16 6 C 0.03 0.17 10.43 -16.91 -0.18 -0.01 16 7 N -0.54 -3.75 5.99 -9.39 -0.06 -3.81 16 8 H 0.42 1.79 8.19 -40.82 -0.33 1.46 16 9 C -0.05 -0.54 7.06 -81.98 -0.58 -1.12 16 10 C 0.59 7.35 7.78 -12.85 -0.10 7.25 16 11 O -0.53 -8.52 16.59 5.19 0.09 -8.43 16 12 N -0.72 -7.79 5.05 -53.48 -0.27 -8.06 16 13 C 0.12 1.51 3.35 -66.25 -0.22 1.29 16 14 H 0.10 1.41 7.66 -51.93 -0.40 1.02 16 15 C 0.04 0.58 7.51 37.77 0.28 0.86 16 16 O -0.33 -6.69 11.35 -35.23 -0.40 -7.09 16 17 C 0.06 1.15 1.28 -90.68 -0.12 1.03 16 18 C 0.18 4.16 7.05 -3.47 -0.02 4.13 16 19 N -0.60 -15.83 3.71 -184.64 -0.68 -16.52 16 20 C -0.22 -6.33 10.70 -15.06 -0.16 -6.49 16 21 H 0.08 2.22 7.83 -52.48 -0.41 1.81 16 22 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 23 N -0.92 -27.62 11.40 55.49 0.63 -26.98 16 24 Si 0.91 22.50 29.55 -169.99 -5.02 17.48 16 25 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 26 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 27 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 28 C 0.10 2.14 8.49 -3.47 -0.03 2.11 16 29 C -0.15 -1.98 6.21 -25.24 -0.16 -2.13 16 30 C -0.10 -1.03 10.59 -39.12 -0.41 -1.44 16 31 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 33 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 34 H 0.07 0.51 8.14 -51.92 -0.42 0.09 16 35 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 36 H 0.06 0.36 6.41 -51.93 -0.33 0.03 16 37 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 38 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 39 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.17 0.62 8.06 -52.48 -0.42 0.20 16 41 H 0.39 3.18 7.49 -40.82 -0.31 2.87 16 42 H 0.08 1.18 7.93 -51.93 -0.41 0.77 16 43 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 44 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 45 H 0.08 2.17 7.20 -51.93 -0.37 1.80 16 46 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 47 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 48 H 0.04 0.82 8.00 -51.93 -0.42 0.40 16 49 H 0.09 1.11 7.95 -51.93 -0.41 0.70 16 50 H 0.08 0.98 7.75 -51.93 -0.40 0.57 16 51 H 0.15 1.52 8.06 -52.48 -0.42 1.10 16 LS Contribution 412.32 15.07 6.21 6.21 Total: -1.00 -35.21 412.32 -9.96 -45.18 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: -8.43 Total: 0.88 kcal Atomic # 6 Polarization: 3.17 SS G_CDS: -2.03 Total: 1.14 kcal Atomic # 7 Polarization: -54.99 SS G_CDS: -0.38 Total: -55.37 kcal Atomic # 8 Polarization: -15.20 SS G_CDS: -0.31 Total: -15.52 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.02 Total: 17.48 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -35.21 -9.96 -45.18 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053983788.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.783 kcal (2) G-P(sol) polarization free energy of solvation -35.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.176 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds