Wall clock time and date at job start Wed Apr 1 2020 05:24:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.47154 * 2 1 4 4 C 1.53005 * 109.47359 * 119.99813 * 2 1 3 5 5 C 1.50705 * 109.47287 * 174.99909 * 4 2 1 6 6 C 1.35450 * 126.06341 * 89.97942 * 5 4 2 7 7 N 1.35538 * 108.86703 * 180.02562 * 6 5 4 8 8 H 0.97000 * 125.67532 * 179.97438 * 7 6 5 9 9 C 1.37647 * 108.64657 * 0.02562 * 7 6 5 10 10 C 1.46673 * 126.23630 * 180.02562 * 9 7 6 11 11 O 1.21696 * 120.00424 * 180.02562 * 10 9 7 12 12 N 1.34782 * 119.99747 * 0.02562 * 10 9 7 13 13 C 1.46495 * 119.99866 * 180.02562 * 12 10 9 14 14 H 1.09002 * 110.42492 * 36.05137 * 13 12 10 15 15 C 1.54180 * 110.47165 * 273.55046 * 13 12 10 16 16 O 1.43997 * 107.54378 * 242.86753 * 15 13 12 17 17 C 1.43159 * 106.80447 * 335.37505 * 16 15 13 18 18 C 1.52713 * 116.34336 * 167.52334 * 17 16 15 19 19 N 1.47816 * 85.72685 * 95.23221 * 18 17 16 20 20 C 1.36938 * 134.38382 * 203.76675 * 19 18 17 21 21 H 1.08005 * 119.99849 * 179.97438 * 20 19 18 22 22 C 1.38811 * 120.00498 * 359.97438 * 20 19 18 23 23 N 1.31620 * 119.99389 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 120.00144 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47284 * 90.00083 * 24 22 20 26 26 H 1.48502 * 109.46739 * 209.99645 * 24 22 20 27 27 H 1.48497 * 109.47147 * 329.99686 * 24 22 20 28 28 C 1.47812 * 91.23098 * 23.75094 * 19 18 17 29 29 C 1.53806 * 105.32617 * 37.96798 * 17 16 15 30 30 C 1.37878 * 107.52939 * 0.25968 * 9 7 6 31 31 H 1.08999 * 109.47224 * 300.00268 * 1 2 3 32 32 H 1.08997 * 109.47206 * 60.00151 * 1 2 3 33 33 H 1.09000 * 109.47365 * 180.02562 * 1 2 3 34 34 H 1.09008 * 109.47412 * 239.99909 * 2 1 3 35 35 H 1.09000 * 109.47233 * 60.00314 * 3 2 1 36 36 H 1.09007 * 109.47105 * 179.97438 * 3 2 1 37 37 H 1.09001 * 109.46946 * 299.99497 * 3 2 1 38 38 H 1.08998 * 109.46910 * 55.00115 * 4 2 1 39 39 H 1.09000 * 109.47118 * 295.00166 * 4 2 1 40 40 H 1.08003 * 125.56896 * 359.97438 * 6 5 4 41 41 H 0.96999 * 119.99913 * 0.02562 * 12 10 9 42 42 H 1.09002 * 109.85413 * 2.39805 * 15 13 12 43 43 H 1.09001 * 109.85355 * 123.33899 * 15 13 12 44 44 H 1.08998 * 113.83016 * 209.43343 * 18 17 16 45 45 H 1.08997 * 113.83348 * 341.03485 * 18 17 16 46 46 H 0.97005 * 119.99534 * 180.02562 * 23 22 20 47 47 H 1.09005 * 113.83278 * 222.05385 * 28 19 18 48 48 H 1.09001 * 113.94876 * 90.46315 * 28 19 18 49 49 H 1.09004 * 110.94527 * 206.55092 * 29 17 16 50 50 H 1.09001 * 110.94402 * 82.84934 * 29 17 16 51 51 H 1.08008 * 126.44809 * 179.70698 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5420 -0.8294 1.1889 6 6 4.4266 0.0741 1.6744 7 7 5.6841 -0.3701 1.4327 8 1 6.5030 0.0883 1.6779 9 6 5.6057 -1.5796 0.7801 10 6 6.7375 -2.4001 0.3361 11 8 6.5367 -3.4563 -0.2341 12 7 7.9999 -1.9843 0.5597 13 6 9.1303 -2.8036 0.1157 14 1 8.8981 -3.2912 -0.8311 15 6 9.4907 -3.8515 1.1877 16 8 10.8291 -3.5692 1.6380 17 6 11.4833 -2.8661 0.5763 18 6 12.8135 -2.2009 0.9228 19 7 13.4398 -3.4321 0.3967 20 6 14.6429 -4.0551 0.5958 21 1 14.8674 -4.9747 0.0758 22 6 15.5740 -3.5048 1.4659 23 7 15.3006 -2.3838 2.0992 24 14 17.2154 -4.3542 1.7368 25 1 18.2042 -3.8462 0.7523 26 1 17.6974 -4.0724 3.1129 27 1 17.0495 -5.8194 1.5608 28 6 12.2492 -3.7229 -0.4296 29 6 10.4101 -1.9392 -0.0193 30 6 4.2695 -1.8766 0.6152 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 -1.0276 0.0005 34 1 1.8933 -0.5139 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 3.1300 1.4425 0.0005 37 1 1.6767 1.9563 -0.8900 38 1 1.6054 -1.7198 1.2952 39 1 1.7516 -0.1583 2.1370 40 1 4.1717 0.9981 2.1721 41 1 8.1600 -1.1427 1.0145 42 1 8.7957 -3.7793 2.0243 43 1 9.4484 -4.8517 0.7566 44 1 13.0278 -1.3106 0.3316 45 1 12.9660 -2.0513 1.9916 46 1 15.9514 -1.9990 2.7070 47 1 11.9567 -4.7729 -0.4265 48 1 12.2905 -3.2950 -1.4312 49 1 10.6227 -1.7186 -1.0654 50 1 10.3229 -1.0207 0.5612 51 1 3.8617 -2.7542 0.1354 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053983788.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:24:54 Heat of formation + Delta-G solvation = -11.444714 kcal Electronic energy + Delta-G solvation = -29996.293197 eV Core-core repulsion = 25896.950137 eV Total energy + Delta-G solvation = -4099.343060 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.37937 -41.55885 -40.05364 -37.78445 -37.17578 -35.72704 -34.14949 -32.55184 -31.82779 -30.51381 -29.66956 -27.89145 -27.59202 -27.10157 -26.65705 -24.55529 -23.67956 -22.26522 -21.27734 -21.20811 -20.61476 -20.35159 -19.34628 -18.75622 -17.69598 -17.14976 -16.79687 -16.67219 -16.49768 -16.11427 -15.97516 -15.61766 -15.31175 -15.15275 -14.91042 -14.62228 -14.52628 -14.42508 -14.36536 -14.18181 -13.52637 -13.36362 -13.28472 -13.00705 -12.97523 -12.90836 -12.80517 -12.71656 -12.67939 -12.33186 -12.31313 -11.91515 -11.76777 -11.64985 -11.59609 -11.39543 -11.37125 -11.20858 -10.95506 -10.62047 -10.20156 -9.72617 -9.04976 -8.93972 -7.91902 -5.24133 0.45136 1.43833 1.46374 1.54825 1.77183 1.93910 2.23961 2.32484 2.46052 2.80051 3.26766 3.34575 3.38828 3.69785 3.78706 3.88698 4.04390 4.06343 4.13894 4.14828 4.24558 4.32232 4.41266 4.51485 4.59431 4.63082 4.70795 4.72749 4.83342 4.86357 4.90789 4.90843 4.93735 4.95096 5.08362 5.11797 5.17595 5.18052 5.19664 5.23171 5.28249 5.35191 5.41358 5.49288 5.55934 5.62656 5.84167 5.90998 5.97543 6.14944 6.40116 6.61298 6.90742 7.06298 7.58840 8.52690 9.25451 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.036287 B = 0.001683 C = 0.001655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.448436 B =16629.071256 C =16910.191428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.092 4.092 3 C -0.145 4.145 4 C -0.038 4.038 5 C -0.186 4.186 6 C 0.048 3.952 7 N -0.525 5.525 8 H 0.431 0.569 9 C -0.076 4.076 10 C 0.589 3.411 11 O -0.572 6.572 12 N -0.706 5.706 13 C 0.129 3.871 14 H 0.103 0.897 15 C 0.035 3.965 16 O -0.368 6.368 17 C 0.077 3.923 18 C 0.174 3.826 19 N -0.640 5.640 20 C -0.236 4.236 21 H 0.080 0.920 22 C -0.067 4.067 23 N -0.953 5.953 24 Si 0.980 3.020 25 H -0.282 1.282 26 H -0.293 1.293 27 H -0.272 1.272 28 C 0.102 3.898 29 C -0.128 4.128 30 C -0.117 4.117 31 H 0.062 0.938 32 H 0.053 0.947 33 H 0.052 0.948 34 H 0.052 0.948 35 H 0.064 0.936 36 H 0.054 0.946 37 H 0.047 0.953 38 H 0.063 0.937 39 H 0.083 0.917 40 H 0.205 0.795 41 H 0.411 0.589 42 H 0.086 0.914 43 H 0.060 0.940 44 H 0.050 0.950 45 H 0.041 0.959 46 H 0.249 0.751 47 H 0.046 0.954 48 H 0.072 0.928 49 H 0.112 0.888 50 H 0.104 0.896 51 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.824 11.636 -2.399 32.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.111 4.111 3 C -0.202 4.202 4 C -0.076 4.076 5 C -0.191 4.191 6 C -0.089 4.089 7 N -0.122 5.122 8 H 0.271 0.729 9 C -0.189 4.189 10 C 0.378 3.622 11 O -0.451 6.451 12 N -0.358 5.358 13 C 0.024 3.976 14 H 0.121 0.879 15 C -0.043 4.043 16 O -0.287 6.287 17 C 0.036 3.964 18 C 0.049 3.951 19 N -0.366 5.366 20 C -0.365 4.365 21 H 0.098 0.902 22 C -0.260 4.260 23 N -0.602 5.602 24 Si 0.807 3.193 25 H -0.209 1.209 26 H -0.219 1.219 27 H -0.197 1.197 28 C -0.023 4.023 29 C -0.167 4.167 30 C -0.145 4.145 31 H 0.081 0.919 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.083 0.917 36 H 0.073 0.927 37 H 0.067 0.933 38 H 0.082 0.918 39 H 0.101 0.899 40 H 0.222 0.778 41 H 0.248 0.752 42 H 0.104 0.896 43 H 0.078 0.922 44 H 0.067 0.933 45 H 0.060 0.940 46 H 0.058 0.942 47 H 0.064 0.936 48 H 0.089 0.911 49 H 0.130 0.870 50 H 0.122 0.878 51 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -29.359 10.804 -2.449 31.379 hybrid contribution 1.677 -0.201 0.320 1.719 sum -27.682 10.603 -2.129 29.719 Atomic orbital electron populations 1.21837 0.94723 1.01751 1.02075 1.21069 0.95631 0.96670 0.97682 1.21851 1.01161 0.95368 1.01824 1.20037 0.88511 1.00795 0.98292 1.19592 0.96453 0.96158 1.06938 1.22408 0.81998 1.01118 1.03367 1.41943 1.09481 1.16299 1.44465 0.72899 1.20035 0.94470 0.91897 1.12492 1.17380 0.82201 0.84559 0.78012 1.90831 1.85397 1.24610 1.44308 1.45794 1.04372 1.25094 1.60558 1.22199 0.85833 0.91740 0.97869 0.87890 1.23727 0.83872 0.98575 0.98103 1.88828 1.24780 1.77143 1.37951 1.23397 0.92712 0.92215 0.88096 1.22073 0.85181 0.89338 0.98549 1.46252 1.15019 1.25418 1.49947 1.19389 0.91476 1.04515 1.21081 0.90210 1.25609 1.02153 0.98488 0.99703 1.69988 1.36057 1.21593 1.32530 0.85065 0.79363 0.78100 0.76724 1.20921 1.21937 1.19674 1.23147 0.85637 0.98616 0.94918 1.23106 0.90934 0.98485 1.04158 1.21314 0.90829 1.00193 1.02134 0.91881 0.92792 0.92894 0.92946 0.91668 0.92729 0.93350 0.91847 0.89861 0.77829 0.75198 0.89623 0.92176 0.93266 0.94046 0.94204 0.93584 0.91070 0.86989 0.87751 0.85133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 9.19 71.98 0.66 -0.63 16 2 C -0.09 -0.98 2.91 -10.79 -0.03 -1.01 16 3 C -0.14 -1.28 8.91 71.98 0.64 -0.64 16 4 C -0.04 -0.42 5.18 29.85 0.15 -0.26 16 5 C -0.19 -2.62 4.82 -20.12 -0.10 -2.72 16 6 C 0.05 0.47 10.43 83.48 0.87 1.34 16 7 N -0.53 -5.83 5.99 -183.62 -1.10 -6.93 16 8 H 0.43 2.20 8.19 -92.71 -0.76 1.44 16 9 C -0.08 -1.47 7.06 40.35 0.28 -1.19 16 10 C 0.59 14.20 7.78 86.44 0.67 14.87 16 11 O -0.57 -18.59 16.59 -4.33 -0.07 -18.67 16 12 N -0.71 -13.82 5.05 -441.32 -2.23 -16.05 16 13 C 0.13 3.15 3.35 46.08 0.15 3.30 16 14 H 0.10 2.63 7.66 -2.39 -0.02 2.61 16 15 C 0.04 1.07 7.51 72.38 0.54 1.62 16 16 O -0.37 -14.72 11.35 -148.98 -1.69 -16.41 16 17 C 0.08 2.85 1.28 -10.64 -0.01 2.84 16 18 C 0.17 8.24 7.05 86.03 0.61 8.85 16 19 N -0.64 -33.92 3.71 -744.80 -2.76 -36.68 16 20 C -0.24 -13.80 10.70 84.03 0.90 -12.90 16 21 H 0.08 4.49 7.83 -2.91 -0.02 4.47 16 22 C -0.07 -3.90 5.50 84.86 0.47 -3.44 16 23 N -0.95 -58.46 11.40 21.65 0.25 -58.21 16 24 Si 0.98 46.94 29.55 68.60 2.03 48.96 16 25 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 26 H -0.29 -14.05 7.11 99.48 0.71 -13.34 16 27 H -0.27 -12.47 7.11 99.48 0.71 -11.77 16 28 C 0.10 4.16 8.49 86.03 0.73 4.89 16 29 C -0.13 -3.15 6.21 31.56 0.20 -2.95 16 30 C -0.12 -2.36 10.59 22.57 0.24 -2.12 16 31 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 32 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 33 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 34 H 0.05 0.74 8.14 -2.38 -0.02 0.72 16 35 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 36 H 0.05 0.52 6.41 -2.38 -0.02 0.51 16 37 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 38 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 39 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 40 H 0.20 0.48 8.06 -2.91 -0.02 0.46 16 41 H 0.41 5.39 7.49 -92.71 -0.69 4.69 16 42 H 0.09 2.48 7.93 -2.39 -0.02 2.46 16 43 H 0.06 1.87 8.14 -2.39 -0.02 1.86 16 44 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 45 H 0.04 2.28 7.20 -2.39 -0.02 2.26 16 46 H 0.25 14.78 8.31 -92.70 -0.77 14.00 16 47 H 0.05 1.89 8.14 -2.38 -0.02 1.87 16 48 H 0.07 2.54 8.00 -2.39 -0.02 2.52 16 49 H 0.11 2.34 7.95 -2.39 -0.02 2.32 16 50 H 0.10 2.13 7.75 -2.39 -0.02 2.11 16 51 H 0.13 2.91 8.06 -2.91 -0.02 2.88 16 Total: -1.00 -79.63 412.32 0.89 -78.74 By element: Atomic # 1 Polarization: 15.91 SS G_CDS: -0.51 Total: 15.40 kcal Atomic # 6 Polarization: 2.87 SS G_CDS: 6.98 Total: 9.85 kcal Atomic # 7 Polarization: -112.03 SS G_CDS: -5.84 Total: -117.87 kcal Atomic # 8 Polarization: -33.32 SS G_CDS: -1.76 Total: -35.08 kcal Atomic # 14 Polarization: 46.94 SS G_CDS: 2.03 Total: 48.96 kcal Total: -79.63 0.89 -78.74 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053983788.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.299 kcal (2) G-P(sol) polarization free energy of solvation -79.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds