Wall clock time and date at job start Wed Apr 1 2020 05:12:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.47067 * 2 1 4 4 C 1.50698 * 109.47232 * 119.99421 * 2 1 3 5 5 N 1.30014 * 127.33853 * 300.04865 * 4 2 1 6 6 O 1.20659 * 112.30152 * 179.97438 * 5 4 2 7 7 C 1.33491 * 113.15652 * 359.71590 * 6 5 4 8 8 C 1.37363 * 106.34375 * 0.45224 * 7 6 5 9 9 C 1.47395 * 128.56613 * 179.85898 * 8 7 6 10 10 O 1.21606 * 119.99958 * 144.61845 * 9 8 7 11 11 N 1.34774 * 120.00004 * 324.61530 * 9 8 7 12 12 C 1.46952 * 120.71979 * 354.13363 * 11 9 8 13 13 C 1.53185 * 108.90419 * 234.30621 * 12 11 9 14 14 C 1.53185 * 109.27567 * 304.61563 * 13 12 11 15 15 C 1.52063 * 109.73287 * 59.92885 * 14 13 12 16 16 C 1.54577 * 110.68075 * 64.31064 * 15 14 13 17 17 C 1.54473 * 102.75932 * 152.61427 * 16 15 14 18 18 N 1.47083 * 107.42658 * 338.69550 * 17 16 15 19 19 C 1.36936 * 125.62612 * 178.94777 * 18 17 16 20 20 H 1.08006 * 119.99937 * 179.97438 * 19 18 17 21 21 C 1.38815 * 120.00264 * 359.97241 * 19 18 17 22 22 N 1.31618 * 120.00027 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00133 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.46858 * 0.02562 * 23 21 19 25 25 H 1.48497 * 109.46672 * 120.00264 * 23 21 19 26 26 H 1.48496 * 109.47239 * 240.00462 * 23 21 19 27 27 C 1.47573 * 108.74170 * 358.92758 * 18 17 16 28 28 C 1.47100 * 120.72164 * 174.11060 * 11 9 8 29 29 H 1.09008 * 109.47025 * 300.00055 * 1 2 3 30 30 H 1.08999 * 109.47071 * 59.99981 * 1 2 3 31 31 H 1.08996 * 109.46924 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47215 * 239.99999 * 2 1 3 33 33 H 1.08995 * 109.47320 * 180.02562 * 3 2 1 34 34 H 1.09003 * 109.46805 * 299.99640 * 3 2 1 35 35 H 1.08999 * 109.47419 * 59.99486 * 3 2 1 36 36 H 1.08004 * 126.83045 * 180.30483 * 7 6 5 37 37 H 1.09004 * 109.56503 * 114.47703 * 12 11 9 38 38 H 1.08999 * 109.55954 * 354.13277 * 12 11 9 39 39 H 1.08997 * 109.50750 * 184.67298 * 13 12 11 40 40 H 1.09004 * 109.53448 * 64.57137 * 13 12 11 41 41 H 1.08994 * 109.42326 * 299.84991 * 14 13 12 42 42 H 1.09003 * 109.38529 * 179.97438 * 14 13 12 43 43 H 1.08995 * 110.71098 * 34.34384 * 16 15 14 44 44 H 1.09000 * 110.85996 * 270.95849 * 16 15 14 45 45 H 1.08999 * 109.88017 * 219.19125 * 17 16 15 46 46 H 1.09003 * 109.87451 * 98.19603 * 17 16 15 47 47 H 0.96999 * 120.00147 * 180.02562 * 22 21 19 48 48 H 1.08998 * 110.37432 * 142.11709 * 27 18 17 49 49 H 1.09000 * 110.37663 * 264.46385 * 27 18 17 50 50 H 1.09007 * 109.56544 * 7.97639 * 28 11 9 51 51 H 1.08997 * 109.56745 * 247.62534 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7103 1.2305 5 7 1.8072 -0.3933 2.4711 6 8 2.3431 -1.1513 3.2419 7 6 3.0245 -2.1244 2.6330 8 6 2.8815 -1.9104 1.2837 9 6 3.4363 -2.6937 0.1652 10 8 2.7938 -2.8320 -0.8580 11 7 4.6558 -3.2567 0.2764 12 6 5.4991 -2.9951 1.4512 13 6 6.8628 -2.4816 0.9788 14 6 7.4713 -3.4901 -0.0007 15 6 6.5508 -3.6618 -1.1988 16 6 6.4379 -2.3411 -1.9941 17 6 6.1260 -2.8306 -3.4257 18 7 6.5743 -4.2282 -3.5208 19 6 6.4570 -5.0301 -4.6246 20 1 6.8192 -6.0471 -4.5942 21 6 5.8724 -4.5359 -5.7826 22 7 5.4313 -3.2964 -5.8199 23 14 5.7130 -5.6297 -7.2886 24 1 6.2821 -6.9685 -6.9903 25 1 4.2792 -5.7706 -7.6483 26 1 6.4506 -5.0195 -8.4238 27 6 7.1718 -4.6233 -2.2306 28 6 5.1714 -4.1467 -0.7752 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 3.1300 1.4426 -0.0005 34 1 1.6767 1.9563 -0.8901 35 1 1.6766 1.9564 0.8899 36 1 3.5800 -2.9201 3.1069 37 1 5.6323 -3.9170 2.0174 38 1 5.0240 -2.2431 2.0812 39 1 7.5243 -2.3631 1.8369 40 1 6.7375 -1.5203 0.4803 41 1 7.5980 -4.4501 0.4996 42 1 8.4417 -3.1262 -0.3384 43 1 7.3808 -1.7948 -1.9700 44 1 5.6241 -1.7255 -1.6108 45 1 6.6621 -2.2191 -4.1515 46 1 5.0536 -2.7718 -3.6120 47 1 5.0225 -2.9512 -6.6290 48 1 6.9123 -5.6548 -1.9924 49 1 8.2544 -4.5006 -2.2603 50 1 4.4984 -4.1270 -1.6325 51 1 5.2444 -5.1635 -0.3895 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054142338.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:12:45 Heat of formation + Delta-G solvation = 48.632660 kcal Electronic energy + Delta-G solvation = -32597.505581 eV Core-core repulsion = 28500.767671 eV Total energy + Delta-G solvation = -4096.737910 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -45.08922 -40.39125 -38.31047 -36.41051 -35.90904 -33.47756 -32.45295 -31.94116 -31.77879 -29.86829 -28.64275 -27.28311 -26.40168 -25.68746 -24.06657 -23.65154 -23.63198 -21.93292 -20.35461 -20.18702 -19.85189 -18.33331 -17.88894 -17.54182 -16.80110 -16.63406 -15.93720 -15.31983 -15.04241 -14.82711 -14.65405 -14.42522 -14.01523 -13.90859 -13.65489 -13.45874 -13.41830 -13.11889 -12.98945 -12.44684 -12.34601 -12.31489 -11.97837 -11.87751 -11.66067 -11.47384 -11.43972 -11.24729 -11.05069 -10.90451 -10.85880 -10.80053 -10.59656 -10.15836 -10.08591 -10.01871 -9.94971 -9.89844 -9.69567 -9.65861 -9.50863 -8.54151 -8.52290 -6.76490 -5.64360 -2.98194 0.96620 1.68941 2.63195 2.96126 3.16743 3.43918 3.48802 3.51721 3.85087 4.10316 4.50415 4.54456 4.66273 4.74329 4.89038 4.93226 4.99064 4.99427 5.03286 5.13631 5.26209 5.27491 5.32695 5.50995 5.51361 5.57693 5.60167 5.67147 5.68918 5.78192 5.78642 5.89977 5.94305 5.96966 6.01898 6.09724 6.11440 6.21735 6.24852 6.30568 6.45021 6.48242 6.59944 6.69984 6.77313 6.89649 7.42331 7.63134 7.72315 7.92110 8.03478 8.19803 8.32644 9.28177 9.88807 10.54830 11.46932 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012488 B = 0.003448 C = 0.002943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2241.699369 B = 8118.286814 C = 9511.389916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.024 4.024 3 C -0.143 4.143 4 C 0.076 3.924 5 N -0.355 5.355 6 O 0.095 5.905 7 C -0.022 4.022 8 C -0.237 4.237 9 C 0.589 3.411 10 O -0.512 6.512 11 N -0.600 5.600 12 C 0.097 3.903 13 C -0.133 4.133 14 C -0.102 4.102 15 C -0.086 4.086 16 C -0.128 4.128 17 C 0.179 3.821 18 N -0.604 5.604 19 C -0.229 4.229 20 H 0.077 0.923 21 C -0.006 4.006 22 N -0.918 5.918 23 Si 0.909 3.091 24 H -0.280 1.280 25 H -0.291 1.291 26 H -0.291 1.291 27 C 0.149 3.851 28 C 0.136 3.864 29 H 0.057 0.943 30 H 0.067 0.933 31 H 0.058 0.942 32 H 0.106 0.894 33 H 0.057 0.943 34 H 0.068 0.932 35 H 0.058 0.942 36 H 0.226 0.774 37 H 0.071 0.929 38 H 0.082 0.918 39 H 0.072 0.928 40 H 0.069 0.931 41 H 0.061 0.939 42 H 0.067 0.933 43 H 0.054 0.946 44 H 0.056 0.944 45 H 0.038 0.962 46 H 0.048 0.952 47 H 0.251 0.749 48 H 0.038 0.962 49 H 0.022 0.978 50 H 0.107 0.893 51 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.973 4.958 20.884 21.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.043 4.043 3 C -0.201 4.201 4 C -0.086 4.086 5 N -0.061 5.061 6 O 0.035 5.965 7 C -0.104 4.104 8 C -0.245 4.245 9 C 0.376 3.624 10 O -0.388 6.388 11 N -0.333 5.333 12 C -0.026 4.026 13 C -0.171 4.171 14 C -0.140 4.140 15 C -0.088 4.088 16 C -0.166 4.166 17 C 0.054 3.946 18 N -0.331 5.331 19 C -0.357 4.357 20 H 0.095 0.905 21 C -0.203 4.203 22 N -0.566 5.566 23 Si 0.740 3.260 24 H -0.206 1.206 25 H -0.218 1.218 26 H -0.218 1.218 27 C 0.022 3.978 28 C 0.015 3.985 29 H 0.076 0.924 30 H 0.086 0.914 31 H 0.077 0.923 32 H 0.124 0.876 33 H 0.076 0.924 34 H 0.087 0.913 35 H 0.077 0.923 36 H 0.242 0.758 37 H 0.089 0.911 38 H 0.100 0.900 39 H 0.091 0.909 40 H 0.088 0.912 41 H 0.080 0.920 42 H 0.086 0.914 43 H 0.072 0.928 44 H 0.074 0.926 45 H 0.057 0.943 46 H 0.066 0.934 47 H 0.061 0.939 48 H 0.056 0.944 49 H 0.039 0.961 50 H 0.125 0.875 51 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -3.096 5.850 20.717 21.749 hybrid contribution 0.481 -1.162 -1.266 1.785 sum -2.614 4.688 19.451 20.178 Atomic orbital electron populations 1.21788 0.93222 1.02468 1.02336 1.19746 0.96552 0.95622 0.92393 1.21828 1.01361 0.94353 1.02511 1.24821 0.96170 0.93825 0.93810 1.73596 1.16590 1.14041 1.01849 1.84572 1.48669 1.29361 1.33917 1.26454 0.97119 0.94842 0.91939 1.22433 1.06726 1.00936 0.94357 1.16896 0.81334 0.78709 0.85507 1.90881 1.59336 1.59512 1.29065 1.47999 1.15331 1.47932 1.22083 1.22004 0.91950 1.00870 0.87822 1.21914 0.95452 1.00107 0.99604 1.21327 0.98613 0.98670 0.95360 1.21452 0.94289 0.98264 0.94810 1.22819 0.99947 0.95289 0.98560 1.21156 0.99197 0.84745 0.89493 1.44516 1.69730 1.10153 1.08663 1.19069 1.33584 0.94094 0.88994 0.90488 1.24789 1.00918 0.96560 0.98026 1.69987 1.45253 1.14048 1.27268 0.86086 0.77368 0.79439 0.83113 1.20560 1.21784 1.21850 1.21412 0.95156 0.95348 0.85892 1.21496 0.95536 0.90749 0.90732 0.92380 0.91400 0.92257 0.87553 0.92433 0.91338 0.92258 0.75785 0.91077 0.90035 0.90943 0.91219 0.92038 0.91443 0.92772 0.92576 0.94333 0.93404 0.93868 0.94383 0.96076 0.87464 0.91800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 9.18 37.16 0.34 -1.23 16 2 C -0.02 -0.30 3.38 -91.77 -0.31 -0.61 16 3 C -0.14 -1.55 9.18 37.16 0.34 -1.21 16 4 C 0.08 0.99 6.10 -79.77 -0.49 0.51 16 5 N -0.35 -4.38 12.01 34.78 0.42 -3.96 16 6 O 0.10 0.98 11.06 18.66 0.21 1.18 16 7 C -0.02 -0.19 9.98 30.41 0.30 0.11 16 8 C -0.24 -2.98 5.68 -102.89 -0.58 -3.56 16 9 C 0.59 9.13 7.61 -12.53 -0.10 9.04 16 10 O -0.51 -10.29 15.58 5.27 0.08 -10.20 16 11 N -0.60 -8.14 2.60 -174.47 -0.45 -8.59 16 12 C 0.10 0.89 5.50 -3.70 -0.02 0.87 16 13 C -0.13 -1.30 5.92 -26.54 -0.16 -1.45 16 14 C -0.10 -1.22 4.64 -27.11 -0.13 -1.35 16 15 C -0.09 -1.41 0.56 -153.97 -0.09 -1.49 16 16 C -0.13 -2.41 4.92 -25.13 -0.12 -2.54 16 17 C 0.18 4.44 4.95 -2.95 -0.01 4.42 16 18 N -0.60 -15.34 3.39 -170.31 -0.58 -15.92 16 19 C -0.23 -6.42 10.28 -15.06 -0.15 -6.57 16 20 H 0.08 2.08 7.83 -52.48 -0.41 1.67 16 21 C -0.01 -0.19 5.49 -17.43 -0.10 -0.28 16 22 N -0.92 -27.63 10.31 55.49 0.57 -27.05 16 23 Si 0.91 22.50 29.55 -169.99 -5.02 17.48 16 24 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 25 H -0.29 -7.29 7.11 56.52 0.40 -6.88 16 26 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 27 C 0.15 2.95 6.15 -2.88 -0.02 2.93 16 28 C 0.14 2.22 5.08 -4.11 -0.02 2.20 16 29 H 0.06 0.61 8.14 -51.92 -0.42 0.19 16 30 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.11 1.58 7.11 -51.93 -0.37 1.21 16 33 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.23 0.97 7.09 -52.48 -0.37 0.60 16 37 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.08 0.62 4.54 -51.93 -0.24 0.38 16 39 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.07 0.79 7.42 -51.93 -0.39 0.41 16 41 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 42 H 0.07 0.82 8.10 -51.93 -0.42 0.40 16 43 H 0.05 0.96 7.99 -51.93 -0.41 0.55 16 44 H 0.06 1.06 7.70 -51.93 -0.40 0.66 16 45 H 0.04 1.07 7.50 -51.93 -0.39 0.68 16 46 H 0.05 1.36 7.38 -51.93 -0.38 0.98 16 47 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 48 H 0.04 0.73 8.01 -51.93 -0.42 0.32 16 49 H 0.02 0.42 8.00 -51.93 -0.42 0.01 16 50 H 0.11 2.27 6.61 -51.92 -0.34 1.93 16 51 H 0.06 0.95 8.12 -51.93 -0.42 0.52 16 LS Contribution 395.38 15.07 5.96 5.96 Total: -1.00 -33.80 395.38 -8.44 -42.24 By element: Atomic # 1 Polarization: 7.41 SS G_CDS: -8.32 Total: -0.90 kcal Atomic # 6 Polarization: 1.09 SS G_CDS: -1.31 Total: -0.22 kcal Atomic # 7 Polarization: -55.49 SS G_CDS: -0.04 Total: -55.53 kcal Atomic # 8 Polarization: -9.31 SS G_CDS: 0.29 Total: -9.02 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.02 Total: 17.48 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -33.80 -8.44 -42.24 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054142338.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.870 kcal (2) G-P(sol) polarization free energy of solvation -33.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.238 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds