Wall clock time and date at job start Wed Apr 1 2020 05:12:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.47067 * 2 1 4 4 C 1.50698 * 109.47232 * 119.99421 * 2 1 3 5 5 N 1.30014 * 127.33853 * 300.04865 * 4 2 1 6 6 O 1.20659 * 112.30152 * 179.97438 * 5 4 2 7 7 C 1.33491 * 113.15652 * 359.71590 * 6 5 4 8 8 C 1.37363 * 106.34375 * 0.45224 * 7 6 5 9 9 C 1.47395 * 128.56613 * 179.85898 * 8 7 6 10 10 O 1.21606 * 119.99958 * 144.61845 * 9 8 7 11 11 N 1.34774 * 120.00004 * 324.61530 * 9 8 7 12 12 C 1.46952 * 120.71979 * 354.13363 * 11 9 8 13 13 C 1.53185 * 108.90419 * 234.30621 * 12 11 9 14 14 C 1.53185 * 109.27567 * 304.61563 * 13 12 11 15 15 C 1.52063 * 109.73287 * 59.92885 * 14 13 12 16 16 C 1.54577 * 110.68075 * 64.31064 * 15 14 13 17 17 C 1.54473 * 102.75932 * 152.61427 * 16 15 14 18 18 N 1.47083 * 107.42658 * 338.69550 * 17 16 15 19 19 C 1.36936 * 125.62612 * 178.94777 * 18 17 16 20 20 H 1.08006 * 119.99937 * 179.97438 * 19 18 17 21 21 C 1.38815 * 120.00264 * 359.97241 * 19 18 17 22 22 N 1.31618 * 120.00027 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00133 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.46858 * 0.02562 * 23 21 19 25 25 H 1.48497 * 109.46672 * 120.00264 * 23 21 19 26 26 H 1.48496 * 109.47239 * 240.00462 * 23 21 19 27 27 C 1.47573 * 108.74170 * 358.92758 * 18 17 16 28 28 C 1.47100 * 120.72164 * 174.11060 * 11 9 8 29 29 H 1.09008 * 109.47025 * 300.00055 * 1 2 3 30 30 H 1.08999 * 109.47071 * 59.99981 * 1 2 3 31 31 H 1.08996 * 109.46924 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47215 * 239.99999 * 2 1 3 33 33 H 1.08995 * 109.47320 * 180.02562 * 3 2 1 34 34 H 1.09003 * 109.46805 * 299.99640 * 3 2 1 35 35 H 1.08999 * 109.47419 * 59.99486 * 3 2 1 36 36 H 1.08004 * 126.83045 * 180.30483 * 7 6 5 37 37 H 1.09004 * 109.56503 * 114.47703 * 12 11 9 38 38 H 1.08999 * 109.55954 * 354.13277 * 12 11 9 39 39 H 1.08997 * 109.50750 * 184.67298 * 13 12 11 40 40 H 1.09004 * 109.53448 * 64.57137 * 13 12 11 41 41 H 1.08994 * 109.42326 * 299.84991 * 14 13 12 42 42 H 1.09003 * 109.38529 * 179.97438 * 14 13 12 43 43 H 1.08995 * 110.71098 * 34.34384 * 16 15 14 44 44 H 1.09000 * 110.85996 * 270.95849 * 16 15 14 45 45 H 1.08999 * 109.88017 * 219.19125 * 17 16 15 46 46 H 1.09003 * 109.87451 * 98.19603 * 17 16 15 47 47 H 0.96999 * 120.00147 * 180.02562 * 22 21 19 48 48 H 1.08998 * 110.37432 * 142.11709 * 27 18 17 49 49 H 1.09000 * 110.37663 * 264.46385 * 27 18 17 50 50 H 1.09007 * 109.56544 * 7.97639 * 28 11 9 51 51 H 1.08997 * 109.56745 * 247.62534 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7103 1.2305 5 7 1.8072 -0.3933 2.4711 6 8 2.3431 -1.1513 3.2419 7 6 3.0245 -2.1244 2.6330 8 6 2.8815 -1.9104 1.2837 9 6 3.4363 -2.6937 0.1652 10 8 2.7938 -2.8320 -0.8580 11 7 4.6558 -3.2567 0.2764 12 6 5.4991 -2.9951 1.4512 13 6 6.8628 -2.4816 0.9788 14 6 7.4713 -3.4901 -0.0007 15 6 6.5508 -3.6618 -1.1988 16 6 6.4379 -2.3411 -1.9941 17 6 6.1260 -2.8306 -3.4257 18 7 6.5743 -4.2282 -3.5208 19 6 6.4570 -5.0301 -4.6246 20 1 6.8192 -6.0471 -4.5942 21 6 5.8724 -4.5359 -5.7826 22 7 5.4313 -3.2964 -5.8199 23 14 5.7130 -5.6297 -7.2886 24 1 6.2821 -6.9685 -6.9903 25 1 4.2792 -5.7706 -7.6483 26 1 6.4506 -5.0195 -8.4238 27 6 7.1718 -4.6233 -2.2306 28 6 5.1714 -4.1467 -0.7752 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 3.1300 1.4426 -0.0005 34 1 1.6767 1.9563 -0.8901 35 1 1.6766 1.9564 0.8899 36 1 3.5800 -2.9201 3.1069 37 1 5.6323 -3.9170 2.0174 38 1 5.0240 -2.2431 2.0812 39 1 7.5243 -2.3631 1.8369 40 1 6.7375 -1.5203 0.4803 41 1 7.5980 -4.4501 0.4996 42 1 8.4417 -3.1262 -0.3384 43 1 7.3808 -1.7948 -1.9700 44 1 5.6241 -1.7255 -1.6108 45 1 6.6621 -2.2191 -4.1515 46 1 5.0536 -2.7718 -3.6120 47 1 5.0225 -2.9512 -6.6290 48 1 6.9123 -5.6548 -1.9924 49 1 8.2544 -4.5006 -2.2603 50 1 4.4984 -4.1270 -1.6325 51 1 5.2444 -5.1635 -0.3895 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054142338.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:12:44 Heat of formation + Delta-G solvation = 27.297051 kcal Electronic energy + Delta-G solvation = -32598.430762 eV Core-core repulsion = 28500.767671 eV Total energy + Delta-G solvation = -4097.663091 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -45.99433 -41.60583 -39.70668 -37.49070 -37.19858 -34.99354 -33.68622 -33.16292 -32.71130 -31.50868 -30.38749 -28.19380 -27.72231 -27.13069 -25.49553 -24.93050 -24.56304 -23.03146 -22.07775 -21.16865 -21.04868 -19.68681 -18.82375 -18.63755 -18.46640 -17.75086 -17.10885 -16.81610 -16.55791 -16.05087 -15.83963 -15.62980 -15.54257 -15.11484 -14.87571 -14.64560 -14.35345 -14.30693 -14.02150 -13.94487 -13.81302 -13.51237 -13.32488 -13.21415 -12.97161 -12.85357 -12.77926 -12.40467 -12.38595 -12.32799 -12.12239 -11.97870 -11.91872 -11.87209 -11.79007 -11.59441 -11.33187 -11.15617 -11.07787 -10.95101 -10.72459 -10.59945 -9.64547 -8.88886 -7.84401 -5.20118 0.14249 0.72904 1.42391 1.44673 1.54567 1.62844 1.96833 2.26592 2.48726 2.92282 3.22996 3.34126 3.54714 3.62484 3.72458 3.86495 3.87160 3.95370 4.04026 4.05072 4.10558 4.14012 4.23338 4.33173 4.50657 4.54200 4.56640 4.64040 4.64909 4.67108 4.74826 4.78632 4.83974 4.84816 4.90222 4.92764 4.99730 5.02156 5.08413 5.14314 5.17541 5.23789 5.25849 5.45118 5.47283 5.50284 5.54393 5.65360 5.76753 6.19123 6.35408 7.06629 7.09224 7.20823 7.78672 8.43482 9.26261 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012488 B = 0.003448 C = 0.002943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2241.699369 B = 8118.286814 C = 9511.389916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.029 4.029 3 C -0.136 4.136 4 C 0.058 3.942 5 N -0.364 5.364 6 O 0.108 5.892 7 C 0.026 3.974 8 C -0.272 4.272 9 C 0.586 3.414 10 O -0.579 6.579 11 N -0.594 5.594 12 C 0.088 3.912 13 C -0.129 4.129 14 C -0.096 4.096 15 C -0.070 4.070 16 C -0.110 4.110 17 C 0.193 3.807 18 N -0.625 5.625 19 C -0.237 4.237 20 H 0.088 0.912 21 C -0.072 4.072 22 N -0.955 5.955 23 Si 0.977 3.023 24 H -0.259 1.259 25 H -0.297 1.297 26 H -0.292 1.292 27 C 0.142 3.858 28 C 0.142 3.858 29 H 0.067 0.933 30 H 0.077 0.923 31 H 0.045 0.955 32 H 0.071 0.929 33 H 0.050 0.950 34 H 0.076 0.924 35 H 0.068 0.932 36 H 0.279 0.721 37 H 0.113 0.887 38 H 0.103 0.897 39 H 0.115 0.885 40 H 0.048 0.952 41 H 0.090 0.910 42 H 0.071 0.929 43 H 0.070 0.930 44 H 0.050 0.950 45 H -0.003 1.003 46 H -0.006 1.006 47 H 0.243 0.757 48 H 0.049 0.951 49 H 0.035 0.965 50 H 0.046 0.954 51 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.054 3.783 25.454 25.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.048 4.048 3 C -0.193 4.193 4 C -0.104 4.104 5 N -0.069 5.069 6 O 0.047 5.953 7 C -0.055 4.055 8 C -0.279 4.279 9 C 0.374 3.626 10 O -0.459 6.459 11 N -0.325 5.325 12 C -0.032 4.032 13 C -0.167 4.167 14 C -0.134 4.134 15 C -0.071 4.071 16 C -0.148 4.148 17 C 0.068 3.932 18 N -0.351 5.351 19 C -0.367 4.367 20 H 0.106 0.894 21 C -0.264 4.264 22 N -0.604 5.604 23 Si 0.805 3.195 24 H -0.183 1.183 25 H -0.225 1.225 26 H -0.219 1.219 27 C 0.016 3.984 28 C 0.019 3.981 29 H 0.086 0.914 30 H 0.096 0.904 31 H 0.064 0.936 32 H 0.089 0.911 33 H 0.069 0.931 34 H 0.095 0.905 35 H 0.087 0.913 36 H 0.295 0.705 37 H 0.131 0.869 38 H 0.121 0.879 39 H 0.133 0.867 40 H 0.067 0.933 41 H 0.109 0.891 42 H 0.089 0.911 43 H 0.089 0.911 44 H 0.068 0.932 45 H 0.015 0.985 46 H 0.012 0.988 47 H 0.052 0.948 48 H 0.067 0.933 49 H 0.052 0.948 50 H 0.064 0.936 51 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -1.124 4.666 25.361 25.812 hybrid contribution -0.084 -0.838 -2.637 2.769 sum -1.208 3.827 22.724 23.076 Atomic orbital electron populations 1.21743 0.92346 1.01847 1.03279 1.19687 0.97367 0.96304 0.91448 1.21776 1.00858 0.93351 1.03344 1.24876 0.96863 0.94563 0.94097 1.73596 1.17166 1.14788 1.01373 1.84562 1.48139 1.29302 1.33331 1.27248 0.94346 0.93862 0.90072 1.22144 1.08971 1.01661 0.95173 1.17325 0.81510 0.78297 0.85418 1.90855 1.61269 1.61885 1.31871 1.48044 1.15171 1.46692 1.22615 1.22477 0.90853 1.03600 0.86300 1.21937 0.96300 0.98172 1.00280 1.21331 0.97316 1.01127 0.93615 1.21387 0.95241 0.94752 0.95748 1.22592 1.00255 0.96969 0.95003 1.20767 0.95247 0.84834 0.92388 1.44812 1.69909 1.10108 1.10303 1.19545 1.32408 0.94790 0.89912 0.89449 1.25699 1.01451 0.97949 1.01311 1.70254 1.46648 1.16051 1.27460 0.85021 0.76705 0.78532 0.79193 1.18327 1.22495 1.21915 1.21704 0.95574 0.96825 0.84249 1.21192 0.94135 0.92687 0.90056 0.91374 0.90415 0.93625 0.91067 0.93110 0.90514 0.91309 0.70533 0.86907 0.87913 0.86680 0.93278 0.89098 0.91076 0.91122 0.93167 0.98522 0.98810 0.94799 0.93313 0.94758 0.93563 0.89451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.16 9.18 71.98 0.66 -2.50 16 2 C -0.03 -0.77 3.38 -11.54 -0.04 -0.81 16 3 C -0.14 -3.03 9.18 71.98 0.66 -2.37 16 4 C 0.06 1.50 6.10 45.16 0.28 1.78 16 5 N -0.36 -8.34 12.01 -44.78 -0.54 -8.88 16 6 O 0.11 1.82 11.06 77.00 0.85 2.67 16 7 C 0.03 0.34 9.98 67.61 0.68 1.02 16 8 C -0.27 -6.50 5.68 -18.74 -0.11 -6.61 16 9 C 0.59 18.52 7.61 86.65 0.66 19.18 16 10 O -0.58 -25.45 15.58 -4.05 -0.06 -25.51 16 11 N -0.59 -15.16 2.60 -824.16 -2.14 -17.30 16 12 C 0.09 1.15 5.50 86.36 0.48 1.62 16 13 C -0.13 -1.85 5.92 30.72 0.18 -1.67 16 14 C -0.10 -1.87 4.64 30.35 0.14 -1.73 16 15 C -0.07 -2.18 0.56 -51.83 -0.03 -2.21 16 16 C -0.11 -4.29 4.92 31.63 0.16 -4.14 16 17 C 0.19 10.36 4.95 86.77 0.43 10.79 16 18 N -0.63 -33.08 3.39 -692.73 -2.35 -35.43 16 19 C -0.24 -13.75 10.28 84.03 0.86 -12.89 16 20 H 0.09 4.75 7.83 -2.91 -0.02 4.73 16 21 C -0.07 -4.30 5.49 84.86 0.47 -3.83 16 22 N -0.95 -61.66 10.31 21.65 0.22 -61.44 16 23 Si 0.98 47.99 29.55 68.60 2.03 50.02 16 24 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 25 H -0.30 -14.82 7.11 99.48 0.71 -14.11 16 26 H -0.29 -14.26 7.11 99.48 0.71 -13.55 16 27 C 0.14 5.51 6.15 86.55 0.53 6.05 16 28 C 0.14 4.60 5.08 86.01 0.44 5.04 16 29 H 0.07 1.44 8.14 -2.38 -0.02 1.42 16 30 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.07 2.41 7.11 -2.39 -0.02 2.39 16 33 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.28 0.36 7.09 -2.91 -0.02 0.34 16 37 H 0.11 0.69 8.14 -2.39 -0.02 0.67 16 38 H 0.10 0.93 4.54 -2.39 -0.01 0.92 16 39 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16 40 H 0.05 0.94 7.42 -2.38 -0.02 0.92 16 41 H 0.09 1.34 8.14 -2.39 -0.02 1.33 16 42 H 0.07 1.40 8.10 -2.39 -0.02 1.38 16 43 H 0.07 2.51 7.99 -2.39 -0.02 2.49 16 44 H 0.05 2.01 7.70 -2.39 -0.02 1.99 16 45 H 0.00 -0.21 7.50 -2.39 -0.02 -0.23 16 46 H -0.01 -0.41 7.38 -2.39 -0.02 -0.42 16 47 H 0.24 15.30 8.31 -92.71 -0.77 14.53 16 48 H 0.05 1.80 8.01 -2.39 -0.02 1.78 16 49 H 0.03 1.28 8.00 -2.39 -0.02 1.26 16 50 H 0.05 2.10 6.61 -2.38 -0.02 2.09 16 51 H 0.09 2.41 8.12 -2.39 -0.02 2.39 16 Total: -1.00 -85.60 395.38 5.37 -80.22 By element: Atomic # 1 Polarization: 7.99 SS G_CDS: 0.92 Total: 8.91 kcal Atomic # 6 Polarization: 0.30 SS G_CDS: 6.44 Total: 6.74 kcal Atomic # 7 Polarization: -118.25 SS G_CDS: -4.80 Total: -123.05 kcal Atomic # 8 Polarization: -23.63 SS G_CDS: 0.79 Total: -22.84 kcal Atomic # 14 Polarization: 47.99 SS G_CDS: 2.03 Total: 50.02 kcal Total: -85.60 5.37 -80.22 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054142338.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.520 kcal (2) G-P(sol) polarization free energy of solvation -85.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.223 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds